genome.fa.s9.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  112  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36086980--36087085	44	2.5	42	81	6	106	25	18	26	29	1.98
36087020--36087129	42	2.6	42	81	4	123	27	18	22	31	1.97
36088727--36089043	27	11.6	27	95	2	544	25	14	29	30	1.95
36088727--36089043	55	5.8	55	96	1	573	25	14	29	30	1.95
36096908--36097169	27	9.6	27	94	3	452	25	14	29	30	1.95
36096908--36097169	55	4.8	55	98	0	488	25	14	29	30	1.95
36103458--36103515	20	2.9	20	78	14	66	37	15	13	32	1.87
36103677--36103747	26	2.9	26	75	10	69	26	22	23	26	2.00
36103952--36103997	23	2.0	24	86	4	67	47	13	2	36	1.54
36107170--36107388	94	2.3	93	81	5	235	31	16	26	25	1.96
36107167--36107392	46	4.8	47	77	5	172	30	16	26	26	1.97
36114496--36114588	48	1.9	48	95	0	168	29	26	13	30	1.95
36118200--36118311	55	2.0	55	96	0	206	30	23	16	29	1.96
36126244--36126312	15	4.6	15	83	0	84	11	17	13	57	1.64
36126235--36126314	30	2.7	30	81	11	92	12	17	13	56	1.68
36130455--36130490	18	2.0	18	94	0	63	41	5	22	30	1.76
36133297--36133462	48	3.5	47	80	6	140	28	20	27	23	1.99
36138856--36138902	20	2.4	20	85	3	69	31	21	14	31	1.94
36139153--36139196	22	2.0	23	95	4	81	34	15	31	18	1.92
36145229--36145285	20	2.8	20	74	10	62	38	15	12	33	1.85
36147358--36147624	81	3.3	81	87	3	376	41	20	13	24	1.87
36147358--36147624	27	9.9	27	86	1	329	41	20	13	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36147326--36147624	54	5.5	54	82	3	350	42	20	13	24	1.88
36149441--36149479	20	1.9	20	84	5	51	25	28	20	25	1.99
36151105--36151268	42	3.9	42	80	9	172	28	28	14	28	1.95
36153540--36153579	21	2.0	20	85	5	53	50	27	2	20	1.61
36155303--36155435	29	4.7	29	81	6	155	33	29	15	22	1.94
36155303--36155435	57	2.3	57	84	5	153	33	29	15	22	1.94
36155441--36155631	40	4.8	40	93	1	305	26	31	22	19	1.98
36156345--36156608	48	5.5	48	94	0	447	29	28	8	34	1.86
36162171--36162242	26	2.7	27	72	12	67	45	25	6	22	1.77
36162172--36162488	54	5.9	54	83	6	365	40	22	8	29	1.82
36162224--36162488	27	9.8	27	89	2	370	40	21	7	30	1.82
36162470--36162593	27	4.6	27	80	7	144	40	18	13	27	1.88
36162254--36162582	81	4.1	81	81	5	245	40	20	9	30	1.84
36166144--36166243	42	2.4	40	81	5	101	31	27	12	30	1.92
36166165--36166243	41	1.9	42	84	7	108	29	25	15	30	1.96
36172296--36172520	79	2.8	80	79	10	219	25	21	26	26	1.99
36172296--36172520	40	5.7	40	84	5	244	25	21	26	26	1.99
36172296--36172526	119	1.9	120	81	7	274	26	21	26	25	1.99
36172349--36172543	79	2.5	79	82	6	191	27	20	26	26	1.99
36187175--36187351	48	3.7	48	87	1	230	23	25	22	29	1.99
36187178--36187354	96	1.8	96	86	4	259	23	25	22	28	1.99
36191798--36191875	40	2.0	40	87	5	113	35	26	12	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36196879--36196917	21	1.9	20	94	5	69	25	0	25	48	1.51
36202885--36202914	13	2.3	13	94	0	51	40	23	6	30	1.80
36203081--36203126	23	2.0	23	95	0	83	39	13	10	36	1.79
36206470--36206637	35	4.8	35	75	5	126	29	18	23	28	1.98
36216459--36216487	12	2.4	12	100	0	58	27	24	13	34	1.93
36218831--36218871	21	2.0	21	85	0	55	14	14	39	31	1.87
36227534--36227700	46	3.6	47	77	10	148	22	29	19	28	1.98
36230277--36230449	46	3.8	44	79	10	186	21	20	29	28	1.98
36230270--36230441	93	1.8	93	91	0	281	20	20	29	28	1.98
36233420--36233488	15	4.6	15	83	0	84	11	17	13	57	1.64
36233415--36233502	30	3.0	29	80	9	90	10	15	15	57	1.64
36235872--36236047	46	3.8	44	79	10	183	21	21	28	28	1.98
36235868--36236039	93	1.8	93	91	0	281	21	21	29	27	1.99
36240795--36240946	27	5.6	27	92	3	232	30	28	13	27	1.94
36240795--36240971	55	3.2	55	89	0	246	31	29	12	26	1.93
36260279--36260374	42	2.3	43	83	5	124	28	19	23	28	1.99
36260280--36260392	42	2.7	42	78	12	115	25	21	25	27	1.99
36267515--36267605	29	3.2	29	86	6	116	28	30	14	26	1.95
36271634--36271792	43	3.8	42	72	16	139	23	18	27	29	1.98
36271667--36271772	41	2.5	43	80	10	112	25	18	26	29	1.98
36276416--36276593	48	3.7	49	81	8	188	25	19	29	25	1.98
36277188--36277259	36	2.0	36	91	0	117	18	19	6	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36288532--36288707	46	3.8	46	75	14	164	30	28	19	21	1.97
36288541--36288710	93	1.8	93	88	2	261	30	28	19	22	1.98
36290711--36291187	233	2.0	233	99	0	945	39	22	15	22	1.91
36305530--36305603	29	2.6	29	86	4	96	27	16	31	25	1.96
36307837--36307957	39	3.1	39	83	4	109	39	26	18	15	1.90
36307860--36307957	39	2.5	40	86	3	135	38	27	20	13	1.90
36310908--36310988	38	2.1	38	90	0	126	23	19	23	33	1.97
36314427--36314600	40	4.4	40	93	2	280	30	28	18	21	1.97
36314427--36314600	79	2.2	80	94	1	305	30	28	18	21	1.97
36317665--36317786	43	2.9	42	77	7	129	27	27	14	29	1.95
36325470--36325507	20	2.0	20	89	5	60	39	5	2	52	1.38
36329580--36329610	15	2.1	15	100	0	62	32	25	0	41	1.56
36330878--36330973	28	3.4	28	78	9	97	18	9	1	70	1.19
36330878--36330973	15	6.8	13	68	18	59	18	9	1	70	1.19
36330902--36330970	9	7.3	9	73	12	59	15	10	1	72	1.18
36337930--36338105	46	3.8	46	76	10	187	23	21	26	28	1.99
36337926--36338097	93	1.8	93	89	0	272	23	22	27	27	1.99
36340901--36341184	50	5.6	50	73	5	239	29	26	17	26	1.98
36340951--36341128	51	3.5	51	75	7	191	29	25	19	26	1.98
36340893--36341179	101	2.8	101	86	1	414	29	26	18	26	1.98
36341533--36341579	19	2.3	20	82	10	60	48	14	0	36	1.44
36345518--36345587	28	2.5	28	83	0	86	40	12	22	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36350047--36350104	27	2.1	27	81	6	64	41	18	22	17	1.90
36356881--36356994	56	2.0	56	98	0	219	30	12	18	38	1.87
36356970--36357168	100	2.0	99	92	1	326	37	5	13	43	1.66
36360198--36360233	5	7.6	5	87	12	58	83	0	0	16	0.65
36364647--36364671	12	2.1	12	100	0	50	84	0	0	16	0.63
36372139--36372167	4	7.2	4	100	0	58	24	0	0	75	0.80
36375482--36375535	21	2.6	21	80	11	65	20	35	11	33	1.88
36382380--36382556	27	6.5	27	79	3	113	28	31	15	24	1.96
36382380--36382556	54	3.3	55	80	7	191	28	31	15	24	1.96
36382401--36382556	82	1.9	81	82	3	197	27	30	16	25	1.96
36386867--36387059	40	4.8	40	88	1	271	26	30	20	23	1.98
36391309--36391350	18	2.4	17	81	14	50	19	4	2	73	1.12
36394949--36394973	13	1.9	13	100	0	50	40	24	4	32	1.73
36409754--36409778	13	1.9	13	100	0	50	40	24	4	32	1.73
36411560--36411595	18	2.0	18	94	0	63	30	5	11	52	1.59
36412105--36412174	35	2.0	35	100	0	140	22	20	11	45	1.82
36425014--36425050	4	9.2	4	93	0	65	27	0	24	48	1.51
36428229--36428280	20	2.6	20	96	0	95	15	34	25	25	1.95
36431509--36431592	28	3.2	28	65	25	83	23	16	29	29	1.96
36431461--36431693	50	4.8	48	81	10	251	26	18	27	28	1.98
36431454--36431689	95	2.4	98	86	5	336	25	19	27	27	1.98
36434708--36434772	15	4.4	14	78	16	69	10	10	12	66	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36436891--36437125	51	4.7	50	78	4	240	25	20	26	27	1.99
36454301--36454486	40	4.7	40	85	5	207	25	27	22	24	2.00
36458962--36459139	27	6.6	27	82	6	180	29	28	15	26	1.96
36467005--36467182	27	6.6	27	81	8	173	30	28	15	25	1.96
36467005--36467181	54	3.3	54	80	10	191	30	28	15	25	1.96
36470472--36470599	55	2.3	55	80	1	148	32	23	25	18	1.97
36472599--36472628	6	5.0	6	100	0	60	16	0	0	83	0.65
36476262--36476321	30	2.0	30	83	6	77	38	6	26	28	1.81
36476967--36477163	50	3.9	50	82	2	252	26	18	25	28	1.98
36477981--36478032	23	2.3	23	100	0	104	21	3	30	44	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259