genome.fa.s9.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  190  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60938675--60938738	28	2.2	28	86	2	83	26	17	4	51	1.64
60953201--60953250	25	2.0	25	100	0	100	28	16	12	44	1.83
60956809--60956930	35	3.4	35	76	12	120	25	20	22	31	1.98
60956808--60957048	74	3.2	75	87	1	351	25	21	21	31	1.98
60957793--60957830	18	2.1	18	100	0	76	18	0	34	47	1.49
60963097--60963215	3	41.0	3	78	9	104	67	0	29	2	1.10
60963103--60963229	33	4.0	32	81	7	125	65	0	31	2	1.11
60964187--60964271	16	5.2	16	97	2	161	24	0	37	37	1.56
60964187--60964271	33	2.6	32	98	1	161	24	0	37	37	1.56
60964252--60964342	45	2.0	45	85	2	121	27	6	28	37	1.82
60964507--60964543	19	2.0	19	85	15	51	54	0	0	45	1.00
60964537--60964724	61	3.1	59	69	19	163	48	6	2	42	1.42
60964487--60964776	120	2.4	120	88	3	429	49	4	2	43	1.35
60970033--60970061	14	2.0	15	93	6	51	0	37	6	55	1.27
60970452--60970492	21	2.0	21	90	0	64	26	29	19	24	1.98
60976847--60976905	15	3.9	15	91	4	59	66	3	0	30	1.08
60976865--60976907	3	14.3	3	100	0	86	67	0	0	32	0.91
60981922--60981950	14	2.1	14	100	0	58	37	13	6	41	1.72
60982739--60983038	127	2.4	125	87	5	417	26	18	20	35	1.95
60985147--60985203	30	1.9	30	85	0	78	33	19	7	40	1.78
60987593--60987639	19	2.5	19	86	6	60	23	23	10	42	1.85
61010534--61010615	26	3.2	26	96	0	155	36	26	6	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61016450--61016570	50	2.4	51	90	4	183	36	14	23	25	1.93
61016552--61016731	31	5.8	31	93	2	290	28	20	27	23	1.99
61016754--61016962	47	4.5	47	79	8	189	27	14	27	30	1.95
61016754--61017006	42	5.6	48	82	8	189	28	13	26	30	1.94
61020629--61020662	5	6.6	5	86	6	50	79	2	0	17	0.86
61020629--61020661	11	3.1	11	86	8	50	81	3	0	15	0.80
61029047--61029101	28	1.9	28	85	10	76	18	41	21	18	1.90
61029557--61029675	58	2.1	58	95	0	211	41	15	10	32	1.81
61030294--61030464	46	3.7	46	75	10	143	22	27	21	28	1.99
61035334--61035423	28	3.3	27	71	17	94	62	5	11	21	1.48
61035319--61035430	56	2.0	55	98	1	215	62	5	10	21	1.47
61036377--61036430	25	2.2	24	86	3	72	18	22	18	40	1.91
61036442--61036527	25	3.4	24	73	12	66	24	29	15	31	1.95
61036561--61036608	25	1.9	25	91	0	78	18	27	20	33	1.96
61036561--61036641	25	3.2	25	79	10	76	24	24	19	30	1.98
61060667--61060739	36	2.0	36	100	0	146	19	32	10	36	1.86
61064242--61064297	28	2.0	28	100	0	112	25	17	14	42	1.87
61067552--61067592	16	2.5	16	88	4	55	2	2	12	82	0.86
61077466--61077544	37	2.1	37	90	0	122	25	31	18	24	1.98
61077663--61077945	47	5.9	47	91	2	431	28	30	8	31	1.87
61077663--61077945	96	3.0	96	92	1	462	28	30	8	31	1.87
61085684--61085755	36	2.0	36	91	5	119	18	45	2	33	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61086356--61086446	45	2.0	45	95	0	164	35	14	10	39	1.81
61086362--61086493	45	3.0	43	83	6	122	34	11	10	43	1.75
61086623--61086695	36	2.0	36	89	0	110	32	8	10	47	1.68
61086390--61086712	177	1.8	171	84	11	436	33	12	11	42	1.78
61087289--61087358	32	2.1	32	86	10	95	21	8	15	54	1.68
61090249--61090291	22	2.0	22	86	4	61	34	0	11	53	1.37
61099236--61099334	40	2.5	40	93	0	162	22	16	29	32	1.95
61104019--61104055	18	2.1	18	95	5	67	59	21	0	18	1.38
61105348--61105395	3	16.0	3	82	8	62	31	6	0	62	1.20
61105348--61105393	12	3.8	12	88	11	76	32	6	0	60	1.22
61105467--61105560	3	30.3	3	79	16	95	28	3	1	67	1.13
61105467--61105557	36	2.5	36	84	10	116	28	3	1	67	1.14
61105716--61105750	3	12.0	3	87	6	54	31	2	0	65	1.07
61105707--61105750	23	1.9	23	95	0	79	27	4	2	65	1.23
61105717--61105750	17	2.0	17	94	0	59	29	2	0	67	1.05
61109918--61109953	11	3.2	11	88	4	54	0	13	0	86	0.58
61111250--61111297	25	1.9	25	86	0	69	35	22	14	27	1.93
61111323--61111379	20	2.9	21	87	10	77	40	8	19	31	1.82
61111428--61111526	26	3.8	26	87	2	146	27	22	23	27	1.99
61115710--61115880	44	3.7	44	73	11	144	29	18	20	31	1.96
61115564--61116208	145	4.5	146	72	8	496	32	17	19	30	1.95
61116261--61116465	89	2.3	88	82	0	239	27	16	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61116261--61116473	44	4.8	44	81	1	228	29	15	25	29	1.96
61117387--61117420	5	6.4	5	96	3	50	0	0	17	82	0.67
61117799--61117923	4	30.2	4	70	9	72	21	8	4	65	1.38
61118022--61118077	3	18.3	3	88	3	85	32	5	0	62	1.18
61118031--61118089	6	8.6	7	77	18	54	30	5	0	64	1.15
61120375--61120527	77	2.0	76	89	2	236	54	2	15	26	1.54
61122773--61122797	13	1.9	13	100	0	50	40	8	12	40	1.72
61125331--61125379	16	3.1	16	82	11	57	51	0	6	42	1.27
61131157--61131184	14	2.0	14	100	0	56	50	0	0	50	1.00
61131678--61131715	13	2.9	13	84	7	51	57	0	2	39	1.12
61131768--61131799	14	2.2	14	94	5	55	31	6	6	56	1.49
61144013--61144061	26	2.0	26	88	8	75	30	0	6	63	1.19
61149335--61149375	4	10.2	4	100	0	82	48	26	0	24	1.51
61154302--61154452	43	3.5	43	72	9	146	29	26	15	27	1.96
61157803--61157853	25	2.0	27	81	14	63	39	0	1	58	1.09
61159192--61159219	11	2.5	11	100	0	56	35	0	7	57	1.26
61160833--61160899	12	5.6	12	75	7	73	22	34	41	1	1.63
61164933--61164961	6	4.8	6	100	0	58	0	0	86	13	0.58
61165081--61165138	24	2.4	23	83	8	71	65	0	0	34	0.93
61171632--61171689	29	2.0	30	89	3	91	51	13	5	29	1.63
61172975--61173008	17	2.0	17	100	0	68	35	11	17	35	1.87
61182171--61182237	35	1.9	35	81	0	80	29	2	25	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61182291--61182412	34	3.6	34	71	20	94	41	0	14	42	1.51
61182320--61182370	26	2.0	25	88	7	77	37	0	17	45	1.49
61182500--61182872	127	3.0	126	88	2	529	37	17	17	27	1.92
61186381--61186423	18	2.4	18	92	0	68	41	9	27	20	1.83
61186495--61186573	30	2.6	30	84	4	97	17	16	32	32	1.93
61192550--61192603	27	2.0	27	85	7	74	53	0	3	42	1.18
61192561--61192617	27	2.1	27	83	6	71	52	3	1	42	1.28
61195153--61195196	18	2.4	18	85	7	54	54	6	4	34	1.47
61204740--61204764	3	8.3	3	100	0	50	0	32	0	68	0.90
61205254--61205547	159	1.9	158	87	6	434	24	12	17	45	1.83
61209151--61209303	28	5.5	28	83	1	155	40	18	24	15	1.90
61209151--61209303	55	2.8	56	80	2	173	40	18	24	15	1.90
61209385--61209520	73	1.9	73	82	3	175	38	16	27	16	1.91
61209429--61209624	101	2.0	100	85	3	268	40	20	22	16	1.91
61215459--61215517	28	2.1	28	84	6	75	38	25	23	11	1.89
61218493--61218541	19	2.5	19	80	3	53	24	4	20	51	1.65
61218664--61218753	19	4.7	19	79	6	83	30	7	16	45	1.76
61218654--61218729	38	2.0	40	82	10	95	30	3	18	47	1.67
61218703--61218753	20	2.6	19	85	11	68	33	9	13	43	1.77
61218809--61218864	23	2.4	23	72	21	55	62	3	1	32	1.23
61218886--61218979	19	4.8	19	71	6	64	35	4	14	45	1.65
61222239--61222581	41	8.4	41	87	0	481	34	26	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61222239--61222581	123	2.8	123	90	0	535	34	26	19	19	1.96
61222738--61222777	14	2.9	14	88	0	53	30	0	22	47	1.52
61224707--61224749	18	2.4	17	84	7	59	23	6	27	41	1.80
61225196--61225377	61	3.0	61	96	2	337	18	8	18	54	1.67
61227323--61228038	288	2.5	290	98	0	1382	36	13	12	36	1.83
61228243--61228298	15	3.8	15	77	20	64	46	1	0	51	1.11
61228403--61228554	9	17.0	9	82	1	171	46	16	1	35	1.55
61234292--61234358	31	2.2	31	83	0	80	17	4	17	59	1.53
61234410--61234508	43	2.3	42	84	5	126	25	27	21	26	1.99
61241706--61242125	206	2.0	208	89	5	645	42	20	9	26	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259