genome.fa.s9.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  90  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29417373--29417532	40	4.0	40	95	1	286	28	30	21	19	1.98
29423953--29423978	13	2.0	13	100	0	52	30	23	0	46	1.53
29437231--29437358	39	3.3	39	84	0	184	21	25	21	32	1.98
29445174--29445301	39	3.3	39	87	0	193	21	25	21	32	1.98
29448945--29449019	33	2.3	33	82	11	84	18	20	18	42	1.89
29464676--29464700	6	4.2	6	100	0	50	68	0	32	0	0.90
29465534--29465574	20	2.0	20	95	0	73	46	9	12	31	1.74
29467574--29467635	23	2.6	24	87	2	81	54	0	4	40	1.22
29470480--29470646	46	3.6	45	75	13	169	29	29	18	22	1.98
29470487--29470656	93	1.8	93	89	0	268	28	28	19	22	1.98
29488759--29488850	47	2.0	47	93	0	157	46	13	14	26	1.80
29489199--29489293	43	2.2	43	79	5	104	31	20	17	30	1.96
29492709--29492742	6	5.7	6	100	0	68	14	0	0	85	0.60
29492982--29493166	49	3.8	49	78	11	193	27	20	29	22	1.98
29492989--29493166	99	1.8	96	89	6	277	27	20	29	23	1.99
29492987--29493164	50	3.7	49	78	10	197	27	20	29	22	1.98
29495680--29495811	50	2.6	50	85	1	165	29	28	16	25	1.97
29499445--29499581	50	2.8	49	79	11	156	29	27	16	26	1.97
29501377--29501553	50	3.6	49	78	11	173	29	26	17	25	1.97
29501378--29501564	101	1.9	99	84	6	252	28	27	17	25	1.98
29505549--29505574	13	2.0	13	100	0	52	30	0	15	53	1.42
29509068--29509092	13	1.9	13	100	0	50	16	36	40	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29513961--29513986	13	2.0	13	100	0	52	30	0	15	53	1.42
29518531--29518676	43	3.4	43	76	9	129	28	19	24	28	1.98
29529471--29529563	19	5.1	18	71	17	75	27	8	15	48	1.74
29529445--29529573	54	2.4	54	92	2	206	31	8	15	44	1.77
29529620--29529660	9	4.6	9	85	8	57	24	0	19	56	1.42
29538980--29539155	46	3.8	46	78	11	198	21	20	28	29	1.98
29538977--29539148	93	1.8	93	92	2	292	22	20	28	28	1.99
29546545--29546720	46	3.8	46	77	14	200	20	20	28	30	1.98
29546542--29546713	93	1.8	93	93	2	301	20	20	29	29	1.98
29552747--29552963	49	4.6	48	74	9	185	23	28	20	27	1.99
29552891--29553063	94	1.8	95	85	3	242	24	26	19	30	1.98
29553718--29553760	20	2.3	18	81	14	52	37	20	0	41	1.53
29555353--29555391	8	4.9	8	87	0	51	20	2	5	71	1.17
29555792--29555825	17	2.0	17	94	0	59	29	0	8	61	1.26
29559588--29559811	39	5.7	39	93	0	367	23	20	25	30	1.99
29560560--29560597	1	38.0	1	100	0	76	0	0	0	100	0.00
29566107--29566137	15	2.1	15	100	0	62	22	19	32	25	1.97
29567087--29567304	38	5.9	38	86	7	272	22	19	25	31	1.98
29569012--29569104	33	3.2	27	71	20	71	25	24	23	25	2.00
29569012--29569082	33	2.1	34	84	7	92	25	25	22	26	2.00
29569012--29569104	28	3.2	28	72	18	73	25	24	23	25	2.00
29576273--29576311	19	2.1	19	100	0	78	20	0	10	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29584860--29584902	15	3.0	15	80	10	54	13	0	37	48	1.43
29587848--29587904	13	4.5	12	87	10	78	7	31	33	28	1.84
29587848--29587904	26	2.2	25	87	6	87	7	31	33	28	1.84
29603126--29603279	28	5.5	28	95	0	256	33	29	12	25	1.92
29605713--29605773	29	2.1	28	90	3	95	29	14	27	27	1.95
29605720--29605836	29	4.0	29	80	4	110	29	12	29	28	1.93
29612773--29613034	54	4.9	53	84	8	293	35	15	24	24	1.94
29622705--29622934	50	4.6	50	80	5	234	26	17	25	30	1.97
29622705--29622934	101	2.3	99	84	5	277	26	17	25	30	1.97
29623033--29623084	25	2.0	26	81	11	61	40	1	21	36	1.64
29624297--29624338	9	4.8	9	88	5	68	11	9	0	78	0.96
29624297--29624338	17	2.4	18	92	4	68	11	9	0	78	0.96
29624355--29624428	36	2.0	36	85	12	98	21	5	4	68	1.26
29624382--29624429	18	2.7	17	75	9	51	27	4	2	66	1.21
29624416--29624507	23	4.1	22	70	14	64	42	0	3	54	1.16
29624418--29624505	21	4.0	22	74	11	72	40	0	3	55	1.16
29624970--29625035	27	2.5	26	82	5	78	51	3	1	43	1.26
29624970--29625032	26	2.4	27	83	2	74	50	3	1	44	1.27
29625034--29625106	34	2.2	33	80	9	85	16	6	4	72	1.22
29625160--29625203	21	2.1	21	84	16	56	36	2	0	61	1.09
29628352--29628474	30	4.1	30	90	0	174	24	21	26	27	1.99
29631955--29631993	20	1.9	21	94	5	71	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29631963--29632021	9	6.3	9	75	7	55	45	1	1	50	1.21
29631953--29632035	20	4.1	21	69	16	61	46	1	1	50	1.16
29631999--29632061	29	2.2	27	88	8	90	41	1	3	53	1.26
29632556--29632602	20	2.3	20	82	10	60	76	2	4	17	1.04
29632737--29632807	37	1.9	36	88	2	106	50	4	1	43	1.30
29632823--29632896	21	3.4	22	77	17	66	58	2	0	39	1.13
29632900--29632951	18	2.9	18	77	5	52	65	0	3	30	1.10
29632931--29633034	56	1.9	54	84	7	138	73	2	8	15	1.20
29632937--29633038	39	2.5	39	77	13	93	74	2	8	13	1.17
29639578--29639752	50	3.5	50	80	6	192	26	17	25	30	1.97
29639578--29639760	101	1.8	101	84	2	251	27	17	24	30	1.97
29641183--29641227	17	2.6	17	89	3	63	33	24	2	40	1.68
29645656--29646018	46	7.7	46	73	12	190	26	19	30	23	1.98
29645886--29646016	47	2.7	47	84	6	158	25	19	30	25	1.98
29656589--29656813	40	5.7	40	85	5	278	24	21	27	26	1.99
29664844--29665068	40	5.7	40	85	5	287	24	22	27	25	2.00
29671972--29672114	51	2.9	50	82	6	157	29	23	18	28	1.98
29673613--29673915	40	7.6	40	90	2	396	24	20	28	27	1.99
29681598--29681780	80	2.3	80	82	4	210	25	20	27	26	1.99
29681598--29681780	40	4.6	39	83	6	179	25	20	27	26	1.99
29687598--29687752	43	3.7	43	81	3	206	29	27	18	25	1.98
29691639--29691690	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29700796--29701007	40	5.3	40	85	3	223	24	21	26	27	1.99
29702964--29703005	21	2.0	21	95	0	75	40	28	11	19	1.87
29704479--29704585	56	1.9	56	96	0	196	25	15	29	28	1.96
29706699--29706732	18	1.9	18	88	5	52	29	17	11	41	1.85
29709045--29709133	29	3.1	29	79	7	92	29	28	15	26	1.96
29716362--29716445	44	1.9	44	85	4	116	38	11	25	25	1.90
29716585--29716706	47	2.6	47	92	0	199	36	12	23	27	1.91
29716685--29717090	54	7.6	54	78	9	397	34	17	24	23	1.95
29716693--29717090	109	3.7	109	81	7	521	34	17	24	23	1.96
29716632--29717098	109	4.5	102	77	9	462	35	16	24	23	1.95
29716632--29717075	209	2.1	209	96	0	816	35	16	24	24	1.95
29716739--29717039	155	1.9	154	81	6	358	34	16	24	24	1.95
29717204--29717237	16	2.1	16	88	5	50	41	2	20	35	1.68
29721638--29721797	43	3.8	43	76	11	159	30	24	16	28	1.97
29729151--29729200	16	3.2	16	82	2	57	52	24	16	8	1.70
29729415--29729526	28	4.0	29	80	4	113	28	15	27	28	1.96
29736645--29736822	27	6.6	27	81	3	187	29	27	14	28	1.95
29736666--29736821	82	1.9	81	85	3	215	29	27	14	28	1.95
29736645--29736822	54	3.3	54	82	3	214	29	27	14	28	1.95
29744821--29744998	27	6.6	27	81	3	187	30	27	14	28	1.95
29744841--29744997	82	1.9	81	85	3	217	30	27	14	28	1.95
29744821--29744998	54	3.3	54	81	7	207	30	27	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29757619--29757800	40	4.5	40	88	2	249	31	28	17	22	1.96
29761584--29761628	24	1.9	23	82	13	56	55	4	0	40	1.20
29767258--29767330	24	3.0	24	97	0	137	31	15	12	41	1.84
29771589--29771627	18	2.1	19	90	4	62	64	2	0	33	1.08
29772577--29772616	19	2.2	19	86	8	57	40	12	5	42	1.64
29797045--29797228	40	4.6	40	83	6	205	23	21	27	27	1.99
29797045--29797225	80	2.3	81	84	9	230	23	21	27	27	1.99
29800978--29801025	15	3.1	15	79	5	51	37	0	14	47	1.44
29801309--29801408	44	2.3	42	81	8	112	25	18	22	35	1.96
29801349--29801452	42	2.4	43	80	3	111	28	15	21	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259