genome.fa.s9.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  210  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66585578--66585778	84	2.4	84	95	0	357	25	24	13	36	1.93
66589011--66589042	5	6.6	5	92	7	57	81	0	0	18	0.70
66589012--66589042	9	3.3	9	95	4	53	80	0	0	19	0.71
66596741--66596792	18	2.9	18	85	0	68	36	11	9	42	1.74
66597216--66597527	72	4.3	72	84	3	380	24	6	15	54	1.64
66598891--66598946	9	6.2	9	87	0	76	39	7	26	26	1.82
66598891--66598946	27	2.1	27	100	0	112	39	7	26	26	1.82
66598808--66599056	135	1.8	135	98	1	482	39	7	24	28	1.82
66602025--66602507	27	17.9	27	83	4	562	28	22	9	40	1.84
66602520--66602713	27	7.2	27	81	3	203	36	18	19	26	1.94
66602520--66602715	54	3.6	54	83	4	243	36	18	18	26	1.94
66602555--66602700	53	2.7	52	88	6	195	36	19	17	26	1.94
66602528--66602687	80	2.0	82	85	3	218	36	19	18	25	1.94
66602913--66602995	27	3.1	26	89	5	121	19	22	21	36	1.95
66603298--66603374	27	2.9	27	86	3	93	16	22	23	37	1.94
66603497--66603689	6	31.8	6	76	15	175	20	17	13	48	1.80
66603570--66603689	37	3.5	36	79	16	137	19	16	14	50	1.79
66603497--66603689	85	2.2	87	89	7	293	20	17	13	48	1.80
66603497--66603689	91	2.2	85	91	5	305	20	17	13	48	1.80
66603497--66603689	30	6.4	30	82	8	239	20	17	13	48	1.80
66605208--66605281	29	2.5	29	82	8	87	50	14	13	21	1.78
66605576--66605626	13	3.9	13	89	0	75	41	21	0	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66614008--66614095	43	2.0	43	97	0	167	25	9	29	36	1.86
66615798--66615837	21	1.9	21	85	10	55	55	20	25	0	1.44
66618186--66618277	45	2.0	46	93	2	159	32	14	13	40	1.84
66628863--66628904	20	2.1	21	86	8	61	71	0	26	2	0.98
66633326--66633480	41	3.6	42	78	8	134	25	17	27	29	1.97
66633311--66633443	45	3.0	45	82	5	166	24	16	25	33	1.96
66634941--66634971	13	2.3	14	94	5	55	32	6	12	48	1.67
66641437--66641480	15	2.9	15	89	0	70	56	13	13	15	1.67
66647393--66647417	10	2.5	10	100	0	50	36	8	28	28	1.85
66648387--66648442	21	2.7	21	82	0	67	8	16	28	46	1.77
66648490--66648676	85	2.2	86	88	0	277	30	31	17	21	1.96
66648504--66648676	43	4.0	43	90	1	267	28	31	17	21	1.97
66650143--66650236	30	3.0	31	85	4	136	52	9	5	32	1.57
66653879--66653965	8	10.9	8	76	11	72	29	2	4	63	1.27
66655219--66655363	40	3.6	39	82	3	182	23	26	19	31	1.98
66655870--66655924	27	2.0	27	86	6	76	60	1	0	38	1.08
66659346--66659414	34	2.2	29	79	18	77	44	0	0	55	0.99
66659352--66659413	34	1.9	34	87	9	94	48	0	0	51	1.00
66660797--66660940	58	2.5	58	79	4	148	28	12	22	36	1.91
66661158--66661376	98	2.2	95	75	9	215	21	24	16	37	1.93
66661025--66661426	49	8.3	49	72	9	195	21	23	17	37	1.94
66661484--66661524	19	2.2	18	95	4	73	48	21	9	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66667295--66667420	19	6.9	18	88	5	175	36	15	11	37	1.83
66667295--66667412	35	3.3	35	95	3	200	36	14	11	37	1.83
66667295--66667417	17	6.8	18	87	10	96	36	14	11	37	1.82
66668034--66668666	119	5.3	118	94	2	1023	31	19	16	33	1.94
66668675--66668786	44	2.5	44	75	5	111	27	25	18	27	1.98
66669683--66669740	8	7.6	8	83	11	59	5	8	0	86	0.71
66669691--66669742	14	3.7	14	82	14	63	5	7	0	86	0.70
66669691--66669743	20	2.7	20	88	8	74	7	7	0	84	0.76
66669683--66669742	29	2.1	27	90	6	93	5	8	0	86	0.69
66673559--66673689	18	7.3	18	87	4	185	36	16	11	35	1.85
66673559--66673681	35	3.5	35	93	2	192	36	16	12	34	1.86
66673552--66673689	53	2.5	54	88	6	199	36	15	11	36	1.84
66678271--66678335	21	3.2	21	73	20	75	10	26	23	40	1.87
66678238--66678353	39	3.0	39	90	0	178	13	25	24	37	1.92
66683865--66683985	41	2.8	42	80	6	109	28	19	23	29	1.98
66686894--66687005	56	2.0	56	98	0	215	36	14	16	33	1.88
66689350--66689388	19	2.0	20	90	5	62	69	2	0	28	1.02
66689640--66689715	22	3.7	21	76	15	68	40	17	6	35	1.75
66689676--66689747	19	3.9	19	87	10	114	37	15	11	36	1.83
66689653--66689747	35	2.5	37	85	13	122	38	15	9	35	1.80
66689866--66689905	21	2.0	20	85	5	53	10	2	15	72	1.21
66690104--66690371	45	5.9	45	79	6	247	25	28	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66690112--66690288	45	4.0	45	87	1	248	25	29	13	31	1.94
66690112--66690281	89	1.9	89	88	0	259	26	29	14	30	1.95
66690322--66690605	78	3.6	78	87	0	408	25	25	17	31	1.97
66690311--66690605	156	1.9	156	88	2	450	25	25	17	31	1.97
66690548--66691044	220	2.3	219	92	1	834	26	22	18	31	1.97
66690907--66691596	78	8.3	91	80	11	436	26	23	18	31	1.97
66690864--66691237	176	2.1	176	94	1	651	28	23	17	29	1.97
66691163--66691548	78	5.0	78	91	2	616	24	23	19	32	1.97
66703849--66703892	21	2.0	22	86	4	63	43	15	4	36	1.68
66703849--66703905	22	2.6	22	86	2	71	40	17	5	36	1.72
66703884--66703954	19	3.9	19	83	14	105	36	15	11	36	1.83
66703887--66703966	34	2.3	35	81	12	103	38	12	12	36	1.81
66704072--66704110	20	2.0	20	84	0	51	10	2	15	71	1.23
66704316--66704484	89	1.9	88	87	3	250	26	29	14	30	1.95
66704316--66704491	44	4.0	45	86	3	241	25	29	13	31	1.94
66704309--66704574	44	5.9	45	77	9	231	25	28	15	30	1.95
66704514--66704807	78	3.8	78	86	2	412	25	25	18	31	1.97
66704514--66704807	155	1.9	156	87	3	441	25	25	18	31	1.97
66705107--66705792	78	8.3	89	77	13	398	25	23	18	31	1.97
66704750--66705240	219	2.3	219	91	2	810	26	22	18	32	1.97
66705064--66705434	174	2.1	175	92	3	631	27	23	18	30	1.97
66705360--66705744	78	5.0	78	90	2	607	24	23	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66705502--66705623	37	3.2	37	64	15	95	21	24	21	32	1.98
66705360--66705744	155	2.5	156	91	3	616	24	23	19	32	1.97
66713877--66713912	18	1.9	19	88	5	56	69	0	0	30	0.89
66714202--66714311	19	5.9	19	93	6	199	36	15	10	37	1.83
66714195--66714311	54	2.1	56	90	9	197	35	16	10	37	1.82
66716266--66716328	26	2.4	26	86	5	83	63	1	0	34	1.04
66718264--66718323	24	2.4	24	80	5	75	43	8	15	33	1.76
66719096--66719138	11	4.1	10	79	8	50	18	0	9	72	1.11
66721187--66721278	46	2.0	46	86	0	130	46	6	16	30	1.72
66742471--66742506	15	2.4	15	95	0	63	33	11	33	22	1.89
66748375--66748601	40	5.7	40	94	0	400	29	20	27	22	1.98
66754292--66754344	23	2.4	22	76	20	56	69	1	18	9	1.25
66759586--66759613	5	5.6	5	100	0	56	82	0	0	17	0.68
66772857--66772932	26	2.8	26	80	11	82	28	10	21	39	1.86
66774379--66774436	26	2.2	26	100	0	116	34	25	6	32	1.83
66776687--66776744	26	2.2	26	81	6	64	31	0	1	67	1.01
66777168--66777226	18	3.2	18	78	9	57	33	5	0	61	1.18
66777174--66777268	21	4.7	20	71	17	79	40	3	0	56	1.15
66777174--66777269	10	9.4	10	71	18	58	39	3	0	57	1.15
66782023--66782069	11	4.5	11	79	15	55	0	6	19	74	1.03
66782023--66782060	19	2.0	20	90	10	62	0	7	21	71	1.11
66782039--66782080	22	1.9	22	85	0	57	2	7	14	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66787847--66787881	18	2.0	17	88	5	52	82	5	2	8	0.91
66788288--66788344	30	1.9	30	89	7	89	50	0	3	45	1.18
66789653--66789684	16	2.0	16	100	0	64	37	6	31	25	1.81
66789654--66789692	16	2.4	16	91	0	60	38	5	25	30	1.78
66792021--66792133	51	2.2	52	85	3	147	40	12	23	23	1.88
66792756--66792789	17	2.0	17	100	0	68	35	11	35	17	1.87
66796154--66796225	6	11.8	6	75	8	65	77	1	8	12	1.04
66796189--66796225	17	2.2	17	90	0	56	83	0	2	13	0.74
66796922--66797168	133	1.9	129	84	9	329	28	21	19	29	1.98
66797056--66797167	40	2.8	40	94	1	188	29	24	16	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259