genome.fa.s9.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  128  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41368258--41368304	20	2.3	21	85	10	62	27	10	2	59	1.42
41368289--41368344	23	2.4	24	76	8	62	23	5	3	67	1.27
41368327--41368366	18	2.4	17	88	12	64	32	0	2	65	1.06
41368406--41368436	11	2.8	11	95	0	53	58	0	0	41	0.98
41368950--41369021	16	4.5	16	68	25	53	27	6	4	61	1.41
41368931--41369024	48	2.0	48	100	0	188	29	5	3	61	1.33
41369438--41369483	3	15.7	3	95	4	85	32	0	0	67	0.91
41373544--41373662	46	2.6	44	85	7	141	28	19	28	23	1.98
41373582--41373850	49	5.7	49	71	9	175	27	19	28	24	1.99
41375817--41375856	21	1.9	21	94	0	71	7	35	35	22	1.82
41377006--41377037	14	2.4	14	94	5	57	18	9	0	71	1.12
41382960--41383021	26	2.3	26	80	2	70	32	22	14	30	1.94
41383324--41383368	20	2.3	20	88	3	65	28	17	26	26	1.98
41383458--41383510	28	1.9	28	84	3	72	30	18	24	26	1.98
41383389--41383533	61	2.4	61	82	8	161	26	19	26	27	1.99
41392128--41392184	28	2.0	29	83	10	73	35	15	17	31	1.92
41397150--41397187	3	12.7	3	100	0	76	65	0	0	34	0.93
41400692--41400962	40	6.8	40	91	1	411	23	28	23	24	2.00
41413633--41413708	26	2.9	26	92	0	116	30	17	10	42	1.82
41416758--41416866	48	2.3	46	89	6	182	44	5	22	26	1.74
41418653--41418691	19	2.1	19	95	0	69	28	23	7	41	1.82
41420476--41420599	39	3.2	39	90	0	185	22	20	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41420476--41420626	39	3.9	39	87	1	142	21	22	29	25	1.99
41420476--41420637	78	2.1	78	80	5	177	22	22	29	26	1.99
41421741--41421811	24	2.9	24	82	4	79	23	16	21	38	1.93
41425698--41425740	15	2.9	15	82	0	59	20	25	11	41	1.86
41430313--41430379	31	2.1	32	94	2	118	44	13	17	23	1.85
41435686--41435719	15	2.3	15	94	0	59	29	23	5	41	1.78
41438982--41439078	25	3.8	25	80	4	95	26	21	21	29	1.99
41443864--41444041	27	6.6	27	83	3	205	26	15	28	29	1.96
41443865--41444020	82	1.9	81	88	3	233	26	15	28	29	1.96
41443861--41444041	82	2.2	81	83	2	229	27	15	27	29	1.96
41455211--41455275	34	1.9	33	87	3	94	32	24	20	23	1.98
41471249--41471479	40	5.8	40	84	1	277	25	23	27	23	2.00
41471249--41471477	120	1.9	119	84	6	311	25	24	27	23	2.00
41472980--41473037	30	2.0	29	86	3	80	43	10	10	36	1.73
41481927--41481959	16	2.1	16	94	0	57	9	15	0	75	1.03
41483704--41483799	22	4.4	22	79	0	120	33	28	27	11	1.91
41494411--41494512	43	2.4	43	83	6	118	25	26	20	27	1.99
41504018--41504042	13	1.9	13	100	0	50	8	48	20	24	1.76
41506697--41506772	15	5.0	15	73	7	73	31	25	2	40	1.69
41506697--41506772	30	2.5	30	82	6	91	31	25	2	40	1.69
41520955--41521157	47	4.3	47	89	3	286	29	30	7	33	1.86
41521047--41521122	22	3.3	22	68	22	66	27	31	9	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41521069--41521147	25	3.3	25	70	22	87	32	31	3	31	1.76
41536670--41536989	95	3.4	95	84	0	408	32	14	13	40	1.84
41536845--41537164	173	1.8	173	86	2	464	34	14	11	40	1.81
41536768--41537253	268	1.8	268	83	0	650	33	14	11	40	1.82
41537020--41537289	95	2.8	95	79	5	303	34	16	9	38	1.82
41537181--41537495	132	2.4	131	81	2	351	35	16	11	36	1.85
41538740--41538915	46	3.8	46	78	10	205	22	21	27	28	1.99
41538737--41538907	93	1.8	93	93	0	297	22	21	27	28	1.99
41541836--41541915	15	5.4	15	77	7	83	10	18	13	57	1.64
41541827--41541914	30	3.0	30	80	11	92	10	18	15	55	1.68
41544031--41544206	46	3.8	46	78	12	207	22	20	27	29	1.98
41544028--41544197	93	1.8	93	94	0	304	22	20	28	28	1.99
41547686--41547718	6	5.5	6	92	0	57	15	27	0	57	1.38
41558158--41558195	16	2.4	16	91	4	60	57	2	10	28	1.45
41559839--41560045	53	3.8	52	73	8	182	20	25	18	35	1.95
41562685--41562907	40	5.6	40	90	4	319	28	27	21	23	1.99
41562652--41562907	80	3.2	78	86	7	313	27	27	21	24	1.99
41569484--41569549	32	2.1	32	94	0	114	36	12	6	45	1.66
41570558--41570621	13	4.9	13	79	7	67	37	7	17	37	1.79
41571481--41571533	27	2.0	27	88	7	81	28	18	18	33	1.95
41571494--41571573	27	3.0	27	84	0	97	22	18	16	42	1.89
41578209--41578296	42	2.1	42	93	0	149	23	27	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41581644--41581701	27	2.1	28	83	3	73	39	15	15	29	1.88
41585113--41585427	46	7.0	46	85	7	378	38	15	24	21	1.92
41585231--41585389	86	1.9	85	89	1	246	37	15	24	22	1.93
41595430--41595463	16	2.2	15	89	5	50	44	0	0	55	0.99
41596049--41596109	23	2.7	23	78	11	65	32	4	1	60	1.28
41602521--41602605	31	2.8	31	89	1	136	22	24	20	32	1.97
41602812--41602871	26	2.4	25	81	10	68	30	20	18	31	1.96
41602825--41602920	26	3.8	25	79	2	95	25	19	26	29	1.99
41603053--41603100	25	1.9	25	91	0	78	31	10	22	35	1.88
41618063--41618144	31	2.7	31	88	1	121	23	26	19	30	1.98
41618354--41618438	26	3.4	25	85	9	93	28	22	21	28	1.99
41618367--41618462	26	3.8	26	90	2	135	26	22	25	26	2.00
41620818--41620842	12	2.1	12	100	0	50	52	8	0	40	1.31
41626305--41626709	56	7.3	56	87	2	539	33	20	13	32	1.92
41626319--41626709	168	2.3	167	90	1	595	32	20	13	32	1.92
41631879--41632027	38	3.9	37	81	8	140	24	19	28	26	1.99
41631929--41632027	37	2.7	37	87	6	139	24	18	29	28	1.98
41643268--41643399	40	3.3	39	85	5	176	27	28	20	23	1.99
41651218--41651397	40	4.5	40	82	6	197	26	28	20	24	1.99
41651216--41651397	79	2.3	80	81	7	192	26	29	20	24	1.99
41656612--41657019	56	7.3	56	88	1	566	32	13	21	33	1.92
41662497--41662521	12	2.1	12	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41664867--41664962	26	3.8	26	90	2	135	26	25	22	26	2.00
41664877--41664975	25	3.9	26	83	11	93	26	24	22	27	2.00
41665185--41665265	31	2.7	31	86	3	121	30	18	27	23	1.98
41680060--41680158	27	3.7	26	77	11	83	19	25	19	36	1.95
41687901--41688006	27	3.9	26	82	7	122	16	23	22	36	1.94
41690645--41690753	58	1.9	57	83	5	139	33	19	17	30	1.95
41693786--41693829	17	2.8	16	83	12	56	27	22	18	31	1.97
41695887--41695927	21	2.1	19	86	9	55	46	21	4	26	1.72
41698952--41698985	14	2.3	15	90	5	52	79	2	0	17	0.86
41698952--41698985	5	7.0	5	86	6	52	79	2	0	17	0.86
41701750--41701977	48	4.9	48	78	7	225	28	23	21	25	1.99
41703451--41703494	22	2.0	22	86	0	61	52	4	0	43	1.22
41703908--41703975	33	2.1	33	94	0	118	32	13	10	44	1.77
41704195--41704233	5	7.4	5	83	11	51	0	17	2	79	0.84
41712555--41712598	22	2.0	22	86	0	61	54	2	0	43	1.12
41714604--41714679	25	3.0	25	76	3	80	38	15	6	39	1.74
41720022--41720305	147	1.9	147	92	1	480	29	15	16	38	1.89
41727284--41727332	6	8.0	6	78	13	55	48	16	16	18	1.81
41727451--41727510	27	2.3	26	85	2	75	35	20	23	21	1.96
41727783--41728002	27	8.1	27	88	0	314	24	20	20	35	1.96
41727783--41728058	81	3.4	80	83	5	315	25	18	19	36	1.94
41727787--41728032	54	4.6	54	84	4	268	24	19	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41727990--41728086	27	3.7	26	90	6	151	27	8	20	43	1.80
41727992--41728102	53	2.1	53	83	6	136	30	8	18	42	1.80
41729991--41730222	49	4.7	49	76	3	239	32	25	17	25	1.96
41730468--41730520	27	2.0	27	84	0	70	39	13	7	39	1.73
41735012--41735374	46	7.7	50	70	16	172	27	19	28	24	1.99
41749776--41749800	9	2.8	9	100	0	50	36	12	0	52	1.39
41752705--41752859	56	2.8	56	91	0	247	25	13	25	36	1.92
41752705--41752888	56	3.3	56	83	3	174	25	14	26	34	1.93
41753369--41753396	13	2.2	13	100	0	56	14	0	32	53	1.41
41755545--41755919	46	7.9	48	74	10	229	27	19	28	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259