genome.fa.s9.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  206  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65477335--65477368	17	1.9	17	88	5	50	55	0	11	32	1.36
65481372--65481429	30	1.9	30	82	10	73	60	12	5	22	1.51
65490571--65490624	25	2.2	25	82	0	63	59	1	1	37	1.19
65492515--65492549	15	2.4	15	85	4	54	74	0	0	25	0.82
65492617--65492672	17	3.3	16	80	9	58	46	8	0	44	1.34
65493606--65493713	55	2.0	54	96	1	198	30	12	16	39	1.86
65503247--65503424	83	2.2	81	87	2	248	46	13	7	32	1.72
65503246--65503476	83	2.9	82	80	7	213	46	12	8	32	1.71
65505887--65505952	29	2.2	30	86	10	91	22	24	10	42	1.85
65513370--65513428	30	2.0	30	90	6	93	22	38	25	13	1.90
65537743--65538082	171	2.0	171	97	0	635	42	16	17	23	1.88
65539699--65539759	13	4.8	13	79	4	70	32	6	21	39	1.79
65539701--65539759	25	2.3	26	82	5	84	30	6	22	40	1.79
65549248--65549698	196	2.3	196	78	5	426	30	19	10	40	1.85
65549700--65549775	35	2.2	35	97	2	145	34	13	7	44	1.72
65555837--65555874	2	19.0	2	88	0	58	44	0	55	0	0.99
65556736--65556781	19	2.3	21	85	7	60	36	6	4	52	1.47
65556746--65556814	22	3.1	23	68	19	56	37	2	5	53	1.40
65564094--65564137	22	2.0	22	86	8	63	38	9	6	45	1.63
65564116--65564219	52	2.0	53	98	1	201	41	13	10	34	1.79
65568134--65568194	31	2.0	30	87	3	86	24	1	13	60	1.42
65570614--65570749	23	5.9	21	70	17	83	19	4	35	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65573084--65573264	40	4.5	40	97	0	335	29	29	19	21	1.97
65579375--65579408	2	17.0	2	87	0	50	52	2	0	44	1.16
65579892--65579956	29	2.2	29	97	0	121	41	23	0	35	1.55
65580131--65580244	56	2.0	56	98	0	219	23	11	7	57	1.57
65585870--65586045	85	2.1	85	95	0	316	36	14	13	35	1.85
65586390--65586590	89	2.2	89	83	1	249	34	20	10	33	1.88
65586687--65586747	19	3.2	19	88	6	88	72	0	6	21	1.07
65586696--65586747	10	5.3	10	76	4	61	73	0	3	23	1.00
65586696--65586772	29	2.7	29	76	6	50	67	0	3	28	1.08
65586696--65586773	9	8.2	9	76	10	66	67	0	3	28	1.07
65587031--65587137	57	1.9	56	81	9	128	28	3	4	63	1.31
65587127--65587175	19	2.7	18	78	9	64	36	2	0	61	1.08
65594610--65594649	18	2.2	18	86	8	55	67	12	0	20	1.22
65594790--65594840	22	2.3	23	80	16	63	64	9	7	17	1.46
65604607--65604652	17	2.7	18	77	12	53	34	0	10	54	1.36
65612294--65612345	26	2.1	26	85	7	72	46	5	0	48	1.26
65612393--65612460	25	2.8	24	86	4	91	33	2	0	63	1.10
65612370--65612524	35	4.4	34	69	14	91	31	4	1	61	1.27
65612393--65612463	24	2.9	24	87	4	97	33	2	0	63	1.09
65612383--65612517	7	19.7	7	67	20	56	32	3	2	61	1.26
65612457--65612525	28	2.5	28	83	4	86	31	4	4	59	1.37
65615509--65615563	21	2.8	20	81	10	60	56	7	1	34	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65615583--65615664	23	3.5	23	76	11	76	60	4	3	30	1.34
65615573--65615664	26	3.7	26	75	8	91	61	4	3	30	1.31
65615689--65615766	23	3.5	23	69	25	69	61	5	1	32	1.26
65615741--65615803	18	3.4	18	75	12	65	61	4	1	31	1.26
65615930--65615957	12	2.3	12	100	0	56	67	0	0	32	0.91
65615995--65616047	17	2.7	19	81	18	65	60	3	0	35	1.15
65616102--65616157	24	2.3	25	82	11	64	58	10	3	26	1.48
65623309--65623348	21	2.0	20	85	5	53	37	0	15	47	1.45
65624600--65624631	3	10.7	3	93	0	55	31	3	0	65	1.08
65624584--65624645	12	5.9	10	75	18	56	27	3	4	64	1.29
65639369--65639400	3	10.7	3	93	0	55	31	3	0	65	1.08
65639353--65639414	12	5.9	10	75	18	56	27	3	4	64	1.29
65643586--65643645	23	2.8	20	76	16	50	35	0	5	60	1.19
65643649--65643748	51	2.0	51	82	7	123	38	6	16	40	1.73
65644043--65644105	13	4.8	13	78	7	74	33	4	22	39	1.75
65644878--65644932	21	2.6	22	88	8	87	25	9	38	27	1.86
65645096--65645229	18	6.9	18	71	24	87	56	1	1	40	1.17
65645147--65645176	15	2.0	15	93	0	51	56	0	0	43	0.99
65645152--65645350	59	3.3	58	70	19	185	53	3	1	41	1.27
65645130--65645372	120	2.0	120	96	0	450	50	4	2	43	1.33
65645180--65645372	61	3.2	60	70	12	178	50	4	2	43	1.34
65648437--65648471	6	5.7	6	86	6	52	37	0	62	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65648439--65648480	18	2.3	18	87	0	57	40	0	59	0	0.97
65652814--65652845	7	4.6	7	96	0	55	71	3	12	12	1.25
65653724--65653771	15	3.1	16	83	16	57	70	2	0	27	0.98
65653715--65653785	11	6.5	11	76	12	58	66	2	1	29	1.15
65664043--65664090	15	3.1	16	83	16	57	70	2	0	27	0.98
65664034--65664104	11	6.5	11	76	12	58	66	2	1	29	1.15
65669835--65669918	37	2.2	39	85	4	109	32	21	10	35	1.88
65670354--65670393	18	2.2	18	90	0	62	30	7	27	35	1.84
65676054--65676079	13	2.0	13	100	0	52	69	0	0	30	0.89
65680011--65680049	20	1.9	20	84	5	51	41	15	17	25	1.89
65683173--65683223	3	17.7	3	80	11	54	31	1	0	66	1.03
65683232--65683455	69	3.2	68	73	17	240	30	4	4	61	1.33
65683197--65684141	139	6.8	138	75	15	678	30	3	5	60	1.37
65683339--65683384	3	15.0	3	81	4	56	32	2	2	63	1.19
65683883--65683931	3	16.3	3	91	8	82	32	2	0	65	1.04
65683486--65684143	290	2.3	277	87	8	929	31	3	5	59	1.38
65696373--65696532	77	2.1	77	92	2	268	26	16	20	35	1.94
65696228--65696722	228	2.2	229	91	3	795	27	18	20	34	1.96
65698256--65698321	12	5.2	13	67	18	50	28	0	1	69	0.97
65698420--65699317	3	297.7	3	64	20	103	30	3	4	61	1.34
65698280--65699540	141	8.8	140	78	14	1059	30	3	4	60	1.34
65698280--65698734	151	3.1	151	88	9	704	31	3	3	61	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65698973--65699530	156	3.7	155	74	21	527	30	3	5	60	1.35
65699176--65699207	14	2.1	16	88	11	50	31	0	3	65	1.08
65698974--65699538	301	1.9	302	93	4	987	30	3	5	60	1.34
65699347--65699530	45	4.0	44	66	26	121	30	3	5	60	1.35
65699284--65699530	140	1.8	136	88	6	385	31	2	5	60	1.32
65699281--65699530	135	1.8	138	90	4	407	32	2	5	60	1.32
65699288--65699579	140	2.1	134	81	12	360	29	3	5	61	1.36
65698988--65699613	301	2.1	303	89	6	955	30	3	5	60	1.36
65701173--65701243	36	2.0	36	100	0	142	33	25	18	22	1.96
65707221--65707272	26	2.0	26	82	14	63	25	1	5	67	1.23
65707259--65707327	31	2.2	31	89	0	102	42	2	8	46	1.49
65708911--65709057	49	3.0	49	87	7	169	21	26	17	34	1.95
65708940--65709057	47	2.4	49	90	5	179	22	25	18	33	1.97
65709161--65709215	28	1.9	29	82	10	69	30	27	12	29	1.93
65718660--65718710	25	2.0	25	100	0	102	50	15	3	29	1.62
65721237--65721287	21	2.4	22	76	3	59	29	1	0	68	1.00
65724696--65724722	7	3.9	7	100	0	54	14	0	11	74	1.08
65724798--65724823	7	3.7	7	100	0	52	23	0	0	76	0.78
65724785--65724845	23	2.7	23	70	5	54	34	0	0	65	0.93
65724855--65724946	8	10.0	9	69	23	50	38	1	3	57	1.22
65728772--65728833	26	2.3	26	75	8	63	59	4	0	35	1.19
65731338--65731443	4	26.0	4	68	12	56	23	9	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65731639--65731680	12	3.6	12	93	3	59	26	7	0	66	1.17
65735506--65736054	189	2.9	186	79	6	457	31	16	21	30	1.95
65735932--65736225	44	6.6	44	76	3	214	30	15	21	32	1.94
65736023--65736232	89	2.4	89	80	1	233	30	14	22	33	1.93
65735932--65736242	133	2.3	131	81	5	376	32	15	20	31	1.94
65737628--65737752	4	30.8	4	67	8	56	23	10	2	64	1.37
65737977--65738059	40	2.1	40	100	0	166	18	14	2	65	1.38
65738537--65738995	38	12.4	38	74	14	170	35	15	23	25	1.94
65738611--65739102	219	2.2	218	82	5	562	37	14	21	25	1.92
65738564--65739076	73	7.0	72	80	7	464	36	15	22	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259