genome.fa.s9.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  201  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63968173--63968210	14	2.7	14	84	8	51	44	10	13	31	1.77
63981404--63981440	17	2.2	17	95	0	65	51	0	0	48	1.00
63995901--63995925	12	2.1	12	100	0	50	36	16	8	40	1.77
63997871--63997899	13	2.1	14	93	6	51	27	3	0	68	1.05
64003165--64003199	5	6.8	5	96	3	61	22	0	0	77	0.78
64009803--64009895	42	2.2	42	84	5	116	32	35	12	19	1.90
64011642--64011695	15	3.7	15	72	18	51	44	0	12	42	1.43
64011695--64011727	10	3.4	10	95	4	59	33	6	0	60	1.21
64014981--64015320	54	6.3	54	89	2	495	40	19	9	30	1.83
64014981--64015393	27	15.3	27	83	1	443	39	19	9	30	1.84
64015247--64015429	81	2.3	80	80	4	199	38	19	9	32	1.84
64015419--64015631	27	7.9	27	85	0	266	36	18	21	23	1.95
64015420--64015631	81	2.6	80	88	3	309	36	17	21	24	1.95
64016148--64016268	6	19.8	6	69	16	79	19	18	13	49	1.79
64016149--64016248	43	2.3	43	86	6	123	19	19	14	48	1.82
64016240--64016277	12	3.2	12	88	7	51	18	10	13	57	1.63
64017573--64017682	56	2.0	56	90	0	175	20	12	25	41	1.87
64018909--64018940	16	2.0	16	100	0	64	37	18	6	37	1.76
64019758--64019839	26	3.2	26	98	0	155	30	6	26	36	1.81
64025030--64025088	20	3.0	20	85	2	84	30	22	23	23	1.99
64027961--64028021	30	2.0	30	83	0	77	29	24	6	39	1.80
64032311--64032350	9	4.2	10	87	12	50	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64032316--64032358	9	5.2	8	89	10	61	72	0	0	27	0.85
64039178--64039580	41	9.9	41	77	8	299	38	19	17	24	1.93
64039207--64039559	123	2.9	123	80	9	357	37	20	17	24	1.93
64040959--64041053	41	2.3	40	90	1	145	27	24	12	35	1.91
64041351--64041388	11	3.4	11	92	3	58	15	23	5	55	1.61
64041351--64041389	17	2.3	16	86	8	51	17	23	5	53	1.63
64043907--64044034	9	13.6	9	73	9	103	46	20	0	32	1.56
64043924--64044001	39	2.0	39	92	0	129	46	20	0	33	1.51
64043920--64044032	57	2.0	57	85	0	154	45	22	0	31	1.59
64050060--64050180	43	2.8	43	89	1	170	20	27	21	30	1.98
64055139--64055175	16	2.2	16	90	9	56	70	0	0	29	0.88
64055138--64055184	16	2.9	16	79	17	53	65	0	2	31	1.04
64058191--64058452	130	2.0	130	100	0	524	33	23	17	25	1.96
64061305--64061334	13	2.3	13	94	0	51	50	6	0	43	1.28
64061981--64062060	25	3.3	24	72	17	67	56	7	3	32	1.45
64065772--64065942	87	2.0	87	91	0	279	25	8	30	35	1.85
64069122--64069170	10	4.9	10	82	9	64	20	10	2	67	1.30
64071125--64071156	16	2.0	17	88	11	50	31	6	18	43	1.75
64083990--64084020	15	2.1	15	100	0	62	35	19	12	32	1.90
64092969--64093142	96	1.8	96	82	1	224	36	14	8	40	1.76
64098108--64098152	16	2.8	16	83	6	56	44	4	2	48	1.35
64098726--64098755	7	4.3	7	91	0	51	16	0	3	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64101407--64101475	34	2.0	34	97	0	129	42	5	2	49	1.41
64101480--64101509	13	2.4	12	94	5	51	53	0	0	46	1.00
64104231--64104269	14	2.7	14	88	4	51	15	17	2	64	1.41
64104237--64104277	14	3.0	14	89	3	57	12	17	2	68	1.31
64104686--64104751	19	3.9	17	69	25	50	53	0	0	46	1.00
64104714--64104745	13	2.3	15	89	10	50	50	0	0	50	1.00
64104686--64104753	33	2.0	36	82	8	88	52	0	0	47	1.00
64106587--64106614	7	4.0	7	100	0	56	28	0	0	71	0.86
64119723--64119762	11	3.4	12	86	13	57	47	0	0	52	1.00
64122448--64122504	20	2.8	20	89	0	78	22	29	0	47	1.52
64127041--64127078	19	2.0	20	85	15	53	39	23	0	36	1.55
64127307--64127474	46	3.6	45	76	12	162	28	27	20	22	1.99
64127308--64127478	93	1.8	93	89	0	270	28	28	21	22	1.99
64133326--64133363	19	2.0	20	85	15	53	39	23	0	36	1.55
64133587--64133714	46	2.8	46	81	9	154	30	27	19	22	1.98
64133590--64133733	46	3.1	45	71	18	127	29	27	19	22	1.98
64134694--64134789	42	2.3	42	81	3	113	16	20	19	42	1.89
64134721--64134806	42	2.0	43	84	2	111	13	24	20	40	1.89
64138483--64138568	44	2.0	44	86	4	120	20	18	24	36	1.95
64145436--64145466	16	1.9	16	100	0	62	32	12	19	35	1.90
64148725--64148757	15	2.2	15	89	10	50	81	6	12	0	0.85
64148801--64148831	15	2.1	15	93	0	53	77	3	0	19	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64149582--64149679	35	2.8	35	78	9	110	39	32	12	15	1.84
64150742--64150775	18	1.9	17	88	5	50	41	8	0	50	1.34
64157467--64157511	23	1.9	24	90	4	74	66	0	2	31	1.04
64157491--64157549	25	2.4	25	82	5	75	61	0	1	37	1.07
64157510--64157544	18	1.9	18	88	0	52	62	0	2	34	1.10
64158831--64161921	2	1559.0	2	68	19	1666	45	5	5	43	1.49
64158831--64161921	9	335.7	9	69	20	912	45	5	5	43	1.49
64158866--64161918	71	43.1	72	67	21	759	45	5	5	43	1.49
64159024--64159819	41	19.2	40	68	21	214	43	5	5	45	1.50
64171924--64178238	2	3145.5	2	71	17	4101	45	5	4	44	1.48
64171956--64172003	11	4.6	11	82	12	57	50	4	4	41	1.41
64184361--64184436	29	2.6	28	83	10	91	27	14	27	30	1.95
64184390--64184716	174	1.9	174	97	0	618	30	14	24	31	1.94
64194591--64194652	32	1.9	32	96	0	115	38	22	9	29	1.86
64197203--64197235	16	2.1	16	94	0	57	39	9	12	39	1.74
64199861--64199908	18	2.7	18	83	3	62	75	2	12	10	1.14
64200812--64200852	10	4.0	10	87	3	55	34	0	19	46	1.50
64221317--64221344	13	2.2	13	100	0	56	46	0	7	46	1.30
64221642--64221680	17	2.3	17	86	8	53	23	2	5	69	1.21
64222506--64222539	17	2.0	17	88	0	50	5	26	0	67	1.13
64223547--64223575	14	2.1	14	100	0	58	34	0	13	51	1.42
64223649--64223689	21	2.0	21	85	0	55	36	12	9	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64223697--64223736	21	1.9	21	89	0	62	30	12	0	57	1.36
64224327--64224351	11	2.3	11	100	0	50	64	8	0	28	1.22
64225157--64225200	21	2.1	21	83	8	54	25	9	2	63	1.35
64225338--64225383	21	2.0	24	88	12	71	21	13	4	60	1.49
64233753--64233823	5	13.2	6	77	16	59	49	16	2	30	1.61
64233749--64233794	20	2.2	21	92	7	85	47	19	0	32	1.50
64233749--64233795	11	4.5	11	87	12	73	46	19	0	34	1.50
64233776--64233831	27	2.1	27	96	0	103	53	12	7	26	1.64
64233820--64233847	14	2.0	14	100	0	56	71	0	14	14	1.15
64237976--64238021	15	3.4	14	85	14	69	67	0	0	32	0.91
64237977--64238064	18	4.9	18	71	12	65	60	0	3	36	1.14
64237978--64238021	13	3.5	13	87	3	63	65	0	0	34	0.93
64237978--64238071	27	3.8	25	71	16	70	60	0	3	36	1.13
64238036--64238099	21	3.0	22	80	11	62	59	0	4	35	1.18
64238488--64238515	13	2.2	13	100	0	56	46	0	7	46	1.30
64238679--64238745	29	2.3	29	81	0	80	38	1	0	59	1.06
64239939--64240019	9	9.0	9	70	0	54	34	27	9	28	1.89
64239939--64240020	18	4.6	18	95	0	128	34	26	10	28	1.90
64249370--64249414	20	2.2	20	92	7	74	40	0	0	60	0.97
64249380--64249429	15	3.4	15	78	18	52	42	0	0	58	0.98
64249369--64249425	20	3.0	20	75	25	61	40	0	0	59	0.97
64249573--64249611	21	1.9	21	94	5	71	30	25	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64250650--64250693	12	3.8	12	87	6	72	70	0	6	22	1.11
64250650--64250710	23	2.5	23	84	12	70	67	0	4	27	1.11
64251869--64251893	7	3.6	7	100	0	50	56	0	0	44	0.99
64255391--64255552	2	80.5	2	75	12	145	43	4	4	46	1.46
64260446--64260533	44	2.0	44	100	0	176	27	15	25	31	1.96
64266247--64266316	36	2.0	34	88	5	104	41	10	12	35	1.77
64268019--64268060	19	2.3	18	84	12	50	40	0	2	57	1.12
64270057--64270086	11	2.6	12	94	5	53	30	0	0	70	0.88
64275780--64275845	33	2.0	32	85	2	87	45	19	9	25	1.80
64276919--64276943	7	3.6	7	100	0	50	88	0	0	12	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259