genome.fa.s9.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  133  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43257631--43257886	94	2.7	92	76	12	223	27	26	21	24	1.99
43260458--43260493	17	2.1	18	89	5	56	27	30	16	25	1.97
43261673--43261944	81	3.4	80	86	2	346	21	17	20	40	1.92
43261673--43261944	27	10.1	27	86	1	312	21	17	20	40	1.92
43264867--43264945	38	2.1	38	100	0	158	31	27	16	24	1.96
43265479--43265551	34	2.1	34	87	0	101	23	23	20	32	1.98
43267902--43267986	44	1.9	44	87	0	125	28	11	24	35	1.91
43271480--43271703	40	5.7	40	84	5	269	24	21	27	25	1.99
43271480--43271701	119	1.9	119	81	7	272	24	22	27	25	2.00
43271533--43271703	79	2.2	79	88	6	249	23	21	28	26	1.99
43291018--43291189	40	4.3	40	91	2	249	26	20	25	27	1.99
43291021--43291223	80	2.5	79	83	7	241	28	19	25	27	1.98
43298965--43299223	120	2.2	120	81	7	287	26	20	26	26	1.99
43298965--43299190	40	5.7	40	88	4	289	25	21	26	26	1.99
43310113--43310145	3	11.0	3	93	0	57	63	0	3	33	1.10
43316881--43317008	57	2.3	57	82	4	152	30	17	27	24	1.97
43316916--43317008	28	3.3	28	77	7	89	29	19	26	24	1.98
43316966--43317021	28	2.0	28	89	0	85	26	21	26	25	1.99
43322174--43322310	46	3.0	46	85	0	184	25	29	9	35	1.88
43322284--43322475	47	4.1	47	87	0	249	25	29	11	32	1.92
43327687--43327756	27	2.6	27	95	2	113	31	28	12	27	1.93
43327687--43327784	28	3.5	28	90	2	135	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43331241--43331595	40	8.8	41	90	3	497	23	21	29	25	1.99
43331241--43331595	82	4.4	82	91	2	531	23	21	29	25	1.99
43331241--43331595	122	2.9	123	89	2	531	23	21	29	25	1.99
43339708--43339777	27	2.6	27	95	2	113	31	28	12	27	1.93
43339708--43339805	28	3.5	28	90	2	135	31	28	13	26	1.94
43345702--43345855	77	2.0	77	100	0	308	32	14	16	36	1.89
43348323--43348469	66	2.2	66	87	3	208	40	3	4	52	1.37
43348464--43348499	9	3.8	9	86	13	54	52	2	0	44	1.15
43349630--43349709	40	2.0	40	97	0	151	30	26	5	38	1.77
43355762--43355906	40	3.6	40	85	4	193	25	24	26	23	2.00
43367207--43367245	19	2.1	19	85	9	53	17	5	2	74	1.12
43367189--43367254	22	3.0	21	79	18	64	18	6	3	72	1.18
43367442--43367501	3	20.0	3	96	0	111	33	1	0	65	1.03
43369653--43369710	29	2.0	28	90	3	89	48	8	22	20	1.77
43372197--43372380	94	2.0	94	93	0	314	28	26	26	17	1.98
43378530--43378738	39	5.3	39	87	0	292	22	24	20	33	1.97
43378530--43378736	78	2.7	78	93	0	351	22	24	20	32	1.97
43386611--43386638	14	2.0	14	100	0	56	28	0	28	42	1.56
43388150--43388190	11	3.7	11	96	0	73	46	12	0	41	1.41
43389613--43389651	14	2.9	14	84	3	53	66	2	0	30	1.05
43389613--43389652	13	3.0	13	82	7	53	65	2	0	32	1.06
43389567--43389687	8	15.5	8	69	15	67	61	3	0	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43389570--43389663	35	2.7	35	91	4	147	63	2	1	32	1.13
43389593--43389637	21	2.1	22	87	4	65	64	2	0	33	1.06
43393298--43393339	21	2.0	21	100	0	84	52	0	19	28	1.46
43394048--43394201	76	2.0	76	98	0	299	34	13	19	32	1.91
43407098--43407165	29	2.3	29	85	5	93	27	30	13	27	1.94
43406987--43407314	174	1.9	174	97	0	620	30	24	14	29	1.95
43407267--43407345	29	2.7	30	82	13	110	29	30	15	25	1.96
43413319--43413434	58	2.0	58	88	3	171	16	17	25	41	1.89
43415034--43415077	19	2.3	19	84	0	61	34	27	20	18	1.96
43415054--43415128	38	2.0	38	84	5	98	34	29	18	17	1.94
43415101--43415137	19	1.9	19	94	0	65	40	21	13	24	1.89
43421777--43421838	30	2.1	30	96	0	115	45	19	24	11	1.83
43431952--43432281	173	1.9	172	88	0	498	26	11	25	36	1.90
43434474--43434663	55	3.5	53	83	7	224	22	24	17	34	1.96
43434649--43434770	47	2.6	47	96	0	217	25	23	13	36	1.92
43444705--43444931	48	4.8	48	74	12	211	25	19	25	29	1.98
43448504--43448716	47	4.6	46	75	13	163	25	30	19	25	1.98
43448451--43448768	94	3.4	93	78	6	313	23	30	19	26	1.98
43455159--43455387	48	4.9	48	76	9	238	25	19	25	29	1.99
43466724--43466766	10	4.1	10	85	11	59	62	0	0	37	0.95
43466727--43466764	12	3.5	11	89	10	60	65	0	0	34	0.93
43466729--43466772	22	2.0	22	90	0	70	59	2	0	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43466724--43466771	10	4.6	10	85	10	51	60	2	0	37	1.09
43470261--43470304	22	2.0	22	81	0	52	47	0	4	47	1.22
43475316--43475547	40	5.8	40	91	2	315	26	30	21	21	1.99
43478464--43478531	34	2.0	34	100	0	136	32	23	20	23	1.98
43480003--43480234	40	5.8	40	92	2	324	26	30	21	21	1.98
43483147--43483214	34	2.0	34	97	0	127	32	22	20	25	1.98
43489259--43489378	40	3.0	40	73	10	109	33	26	15	24	1.95
43495018--43495049	17	1.9	17	93	6	57	62	0	25	12	1.30
43499147--43499213	33	2.0	33	97	0	125	61	14	4	19	1.50
43499414--43499888	147	3.2	143	82	7	555	45	4	8	41	1.57
43500299--43500361	31	1.9	34	81	15	80	26	15	3	53	1.57
43508760--43508853	25	3.8	25	71	20	81	23	22	20	34	1.97
43508747--43508859	49	2.3	50	81	7	133	25	22	20	31	1.98
43511353--43511386	17	1.9	18	94	5	61	55	0	11	32	1.36
43512112--43512171	10	6.0	10	80	7	59	66	3	5	25	1.27
43516094--43516127	16	2.2	16	89	5	52	82	0	2	14	0.79
43527445--43527512	33	2.1	33	100	0	136	60	8	5	25	1.49
43528372--43528451	25	3.2	24	68	19	65	22	20	20	37	1.94
43531214--43531681	154	3.0	147	80	11	478	42	4	10	42	1.61
43531652--43531709	19	3.0	20	76	11	59	46	3	12	37	1.58
43533242--43533268	4	6.8	4	100	0	54	0	22	0	77	0.76
43537174--43537502	47	7.0	47	95	0	550	31	12	29	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43537174--43537551	141	2.7	141	90	1	571	32	11	29	26	1.92
43542628--43542707	24	3.3	23	67	23	58	35	17	1	46	1.56
43554966--43555234	40	6.6	40	75	13	223	31	20	20	27	1.97
43554924--43555196	40	6.7	42	74	18	204	30	20	20	27	1.98
43554930--43555194	83	3.2	82	73	18	273	31	20	21	26	1.98
43554923--43555284	160	2.2	165	87	9	517	31	20	21	27	1.98
43554967--43555244	83	3.4	81	74	15	256	31	19	21	27	1.97
43556643--43556702	22	2.6	24	87	7	81	28	3	3	65	1.25
43556757--43556829	21	3.7	18	72	16	56	32	8	0	58	1.27
43556754--43557071	20	15.3	20	68	19	113	33	5	1	59	1.28
43556912--43557071	11	14.0	12	67	23	62	33	2	1	62	1.19
43556916--43557005	44	2.1	42	86	14	121	32	2	3	62	1.24
43556797--43557071	7	38.4	7	64	21	58	33	4	1	60	1.26
43556971--43557069	49	1.9	52	82	10	123	34	3	1	61	1.18
43580522--43580624	40	2.6	39	80	10	111	32	16	20	31	1.95
43580521--43580932	80	5.0	81	69	19	264	31	18	21	28	1.97
43580689--43580918	42	5.5	42	70	18	162	29	20	21	28	1.98
43580514--43580988	165	2.9	167	87	9	649	31	18	21	29	1.97
43582548--43582627	24	3.3	23	67	23	58	35	17	1	46	1.56
43594950--43595452	176	2.9	176	92	2	832	30	19	21	28	1.97
43594960--43595432	44	10.8	43	71	12	293	31	18	21	28	1.97
43597230--43597309	24	3.3	23	67	23	58	35	17	1	46	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43601412--43601467	29	2.0	28	82	3	67	39	7	14	39	1.73
43601754--43601782	15	1.9	15	100	0	58	24	0	0	75	0.80
43601938--43601970	10	3.3	10	91	8	50	81	6	0	12	0.85
43603621--43603681	13	4.8	13	74	9	63	34	18	8	39	1.80
43604921--43604948	3	9.3	3	100	0	56	0	32	0	67	0.91
43609582--43609649	35	1.9	35	100	0	136	27	26	16	29	1.97
43629800--43629834	15	2.4	15	90	4	54	34	0	0	65	0.93
43629794--43629834	20	2.1	19	86	4	55	31	0	0	68	0.90
43631223--43631268	3	15.3	3	100	0	92	32	0	0	67	0.91
43636518--43636576	10	5.9	10	80	7	66	64	1	10	23	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259