genome.fa.s9.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  220  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69751799--69751849	22	2.3	23	80	12	61	33	3	13	49	1.61
69758765--69758851	34	2.4	37	86	9	117	45	28	2	22	1.65
69759329--69759525	41	4.8	41	77	6	186	27	16	20	35	1.94
69760044--69760126	31	2.6	31	72	12	80	63	9	2	24	1.36
69768492--69768517	6	4.3	6	100	0	52	0	19	0	80	0.71
69770259--69770285	6	4.5	6	100	0	54	14	55	0	29	1.40
69774798--69774872	21	3.4	21	75	13	80	26	12	2	58	1.47
69774795--69774870	24	3.3	24	76	14	88	26	10	2	60	1.43
69774865--69774915	25	1.9	26	84	11	68	23	13	0	62	1.31
69776093--69776170	2	39.5	2	97	2	149	51	0	48	0	1.00
69776231--69776292	28	2.2	28	82	5	72	27	22	6	43	1.77
69776553--69776587	17	2.1	17	88	0	52	0	22	0	77	0.78
69784871--69784903	14	2.3	15	89	5	50	60	3	3	33	1.27
69785211--69785253	23	2.0	23	86	9	63	48	6	16	27	1.71
69785217--69785266	23	2.2	23	82	13	59	52	10	14	24	1.71
69785282--69785311	11	2.7	11	89	0	51	60	0	0	40	0.97
69785706--69785751	12	3.9	12	78	13	51	21	0	4	73	1.00
69785788--69785812	13	1.9	13	100	0	50	88	0	0	12	0.53
69786046--69786122	24	3.3	23	87	7	111	6	1	28	63	1.27
69786970--69787398	72	5.9	72	84	6	571	32	20	16	31	1.94
69786965--69787399	148	3.0	144	86	4	592	32	20	16	31	1.94
69787293--69787510	119	1.8	119	86	2	312	33	18	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69787402--69787638	70	3.4	71	88	7	353	29	21	17	31	1.96
69802257--69802291	16	2.3	15	90	5	52	62	2	2	31	1.24
69802430--69802472	20	2.1	21	82	4	52	62	6	2	27	1.33
69802602--69802644	23	2.0	23	86	9	63	51	6	13	27	1.67
69802608--69802657	23	2.2	23	82	13	59	54	10	12	24	1.67
69802673--69802702	11	2.7	11	89	0	51	60	0	0	40	0.97
69803216--69803264	15	3.3	15	77	11	55	79	0	8	12	0.93
69803492--69803538	24	2.0	24	100	0	94	4	4	17	74	1.14
69807617--69807684	33	2.1	33	88	0	100	38	5	1	54	1.34
69807726--69807790	25	2.5	25	80	7	76	44	1	0	53	1.09
69807741--69807798	25	2.4	25	88	5	84	39	1	0	58	1.08
69808205--69808229	13	1.9	13	100	0	50	64	4	0	32	1.12
69810582--69810618	15	2.3	17	90	9	60	16	0	0	83	0.64
69810856--69810893	16	2.3	16	86	13	51	71	0	2	26	1.00
69810855--69810897	17	2.4	18	84	7	61	69	0	2	27	1.00
69810855--69810917	29	2.2	28	75	10	67	66	1	3	28	1.16
69811261--69811309	21	2.5	21	83	9	68	53	0	0	46	1.00
69826189--69826229	21	2.0	21	85	0	55	58	0	29	12	1.34
69838559--69838851	148	2.0	141	93	4	496	40	19	14	25	1.89
69845037--69845128	46	2.0	46	97	0	175	40	15	11	32	1.84
69847297--69847332	3	12.0	3	100	0	72	33	0	0	66	0.92
69852783--69852869	27	3.3	27	77	9	115	36	24	11	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69852801--69852895	26	3.6	26	77	8	111	34	28	10	26	1.89
69852776--69852921	27	5.5	27	75	8	111	34	26	12	27	1.92
69852776--69852898	53	2.3	53	95	0	228	34	26	12	26	1.91
69855287--69855354	35	1.9	35	93	0	118	41	10	13	35	1.78
69867080--69867120	18	2.2	18	86	4	55	41	4	7	46	1.53
69867066--69867120	19	2.8	19	81	8	58	47	3	7	41	1.49
69867973--69868020	5	10.0	5	91	8	82	37	0	0	62	0.95
69867971--69868020	19	2.6	19	96	0	91	40	0	0	60	0.97
69867971--69868025	10	5.8	9	87	10	74	40	0	0	60	0.97
69875347--69875426	36	2.2	36	97	2	151	42	3	21	32	1.70
69879946--69879995	12	3.8	13	74	25	52	58	4	14	24	1.53
69885690--69885749	17	3.4	18	71	15	63	56	0	5	38	1.21
69885945--69885977	16	2.0	17	88	5	50	60	0	0	39	0.97
69894894--69894932	20	2.1	19	90	9	62	56	5	5	33	1.43
69895157--69895236	36	2.2	36	80	8	92	52	3	8	35	1.50
69895369--69895423	3	18.3	3	81	7	67	61	1	5	30	1.29
69908695--69908914	118	1.9	116	92	3	370	44	9	5	41	1.58
69908864--69908907	19	2.3	19	84	0	52	50	9	0	40	1.34
69922387--69922462	18	4.2	18	83	6	91	32	22	11	32	1.90
69927347--69927389	19	2.3	19	92	4	70	76	9	9	4	1.14
69927528--69927574	19	2.5	20	82	10	62	65	2	31	0	1.04
69927642--69927688	20	2.4	19	82	13	60	17	0	12	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69933014--69933154	72	2.0	72	94	0	246	33	20	25	20	1.97
69934842--69934883	18	2.5	17	80	7	50	38	0	7	54	1.28
69935014--69936220	146	8.2	148	85	6	1552	28	8	6	56	1.53
69935014--69936220	297	4.1	294	89	4	1700	28	8	6	56	1.53
69935929--69936206	133	2.1	135	85	4	373	28	8	6	56	1.55
69936786--69936865	3	27.0	3	70	16	51	1	33	0	65	1.01
69936800--69936858	16	3.8	16	74	17	61	1	35	0	62	1.05
69941926--69942017	48	1.9	48	97	0	175	43	20	7	28	1.79
69949280--69949330	20	2.7	19	79	11	52	66	1	1	29	1.13
69949698--69949754	23	2.5	22	78	13	62	68	3	1	26	1.15
69953220--69953253	17	1.9	18	88	5	52	44	0	0	55	0.99
69953666--69953690	3	8.3	3	100	0	50	0	64	36	0	0.94
69956634--69956680	21	2.2	22	92	3	78	21	19	38	21	1.94
69959210--69959268	28	2.0	30	83	6	77	38	0	1	59	1.08
69960988--69961041	17	2.9	19	89	10	94	38	11	14	35	1.82
69961004--69961050	19	2.4	20	76	23	55	40	8	14	36	1.77
69960991--69961048	17	3.3	17	80	15	73	39	10	13	36	1.79
69961312--69961397	7	12.0	7	82	4	82	23	0	32	44	1.54
69961310--69961394	29	3.0	29	91	1	136	24	0	30	44	1.54
69961412--69961531	44	2.7	47	79	13	153	26	9	4	60	1.46
69970139--69970251	25	4.5	25	87	3	165	21	24	18	35	1.96
69970139--69970251	50	2.3	50	92	3	183	21	24	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69970151--69970288	25	5.9	22	80	9	116	20	25	20	34	1.97
69976287--69976448	89	1.8	87	81	5	200	30	19	23	27	1.98
69976170--69976979	220	3.7	220	92	0	1332	32	19	21	26	1.97
69976727--69976888	89	1.8	87	86	5	236	30	19	23	26	1.98
69976921--69977527	78	7.8	78	88	1	842	32	18	24	24	1.97
69977467--69977740	45	6.1	46	78	10	269	31	16	28	24	1.96
69977467--69977740	89	3.0	90	82	9	292	31	16	28	24	1.96
69978092--69978147	18	3.5	15	81	18	60	37	10	16	35	1.83
69978090--69978168	35	2.2	37	86	13	121	37	10	16	35	1.82
69978090--69978161	19	3.9	19	89	10	123	37	11	15	36	1.83
69978090--69978184	17	4.8	22	84	12	79	36	9	15	37	1.80
69978450--69978485	18	2.1	17	89	5	54	33	0	0	66	0.92
69982988--69983025	18	2.0	20	90	10	62	34	10	18	36	1.85
69984694--69984724	9	3.4	9	90	0	53	32	22	0	45	1.53
69991839--69991871	9	3.7	9	91	0	57	24	12	24	39	1.89
69991837--69991871	18	1.9	18	100	0	70	28	11	22	37	1.89
69991921--69991975	9	6.1	9	89	0	83	45	16	9	29	1.78
69991921--69991967	18	2.6	18	100	0	94	46	14	10	27	1.78
69993378--69993860	57	8.6	53	69	14	265	29	17	19	33	1.95
69993378--69993860	111	4.3	113	84	4	627	29	17	19	33	1.95
69993971--69994038	28	2.6	27	82	15	88	23	0	30	45	1.53
69998052--69998110	28	2.1	27	87	3	82	27	13	1	57	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69998062--69998104	23	1.9	22	85	4	59	27	11	2	58	1.46
69998135--69998206	32	2.2	32	82	4	92	31	5	1	61	1.28
69998396--69998444	16	3.0	16	80	11	55	30	8	2	59	1.38
69998472--69998514	21	2.0	21	90	0	68	32	4	4	58	1.39
69998608--69998644	15	2.4	17	82	17	53	29	5	0	64	1.15
69998874--69998934	23	2.7	23	77	7	70	27	11	0	60	1.31
69998926--69998974	21	2.3	20	83	10	62	38	4	4	53	1.39
69998937--69998982	21	2.2	21	88	0	65	32	4	6	56	1.45
69998177--69999133	468	2.0	472	90	4	1509	30	11	7	50	1.66
69999168--69999219	22	2.3	23	77	6	54	26	19	0	53	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259