Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  11  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3125834--3125885
26
2.1
26
89
7
81
25
0
11
63
1.28
3130946--3130971
13
2.0
13
100
0
52
38
0
0
61
0.96
3132042--3132074
6
5.5
6
86
13
50
0
12
0
87
0.53
3132040--3132074
18
2.0
18
94
5
63
0
11
0
88
0.51
3146564--3146622
25
2.4
25
80
5
66
55
15
18
10
1.67
3150132--3150161
15
2.0
15
93
0
51
13
13
10
63
1.52
3159688--3159802
3
38.7
3
71
8
65
56
2
8
32
1.44
3159666--3159709
17
2.6
16
82
10
52
52
2
11
34
1.50
3159661--3159733
6
12.7
6
72
13
55
49
1
16
32
1.54
3159759--3159879
12
9.2
12
71
21
57
65
2
2
29
1.19
3159997--3160100
3
34.0
3
72
12
61
59
2
8
28
1.42
3159997--3160097
31
3.4
30
74
21
90
59
2
8
28
1.42
3167241--3167316
32
2.3
33
88
4
109
31
2
21
44
1.66
3168358--3168438
17
4.8
17
70
8
58
27
12
18
41
1.86
3168358--3168448
17
5.4
17
67
17
55
28
13
17
40
1.87
3169796--3169927
68
1.9
69
84
1
176
39
5
6
49
1.50
3171963--3172082
51
2.4
51
91
0
186
26
22
12
38
1.90
3177758--3177798
17
2.5
16
80
4
55
46
39
0
14
1.45
3179624--3179664
17
2.3
18
83
4
57
29
7
9
53
1.60
3182321--3182402
23
3.6
23
81
0
101
15
24
24
35
1.94
3184926--3184966
21
1.9
22
95
5
75
19
34
19
26
1.96
3185214--3185276
11
5.9
11
74
7
58
11
11
15
61
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3187084--3187121
17
2.2
19
86
13
55
44
0
13
42
1.43
3187112--3187152
9
4.7
9
90
3
66
43
0
2
53
1.13
3187707--3187792
44
2.0
44
88
4
129
31
25
20
22
1.98
3187828--3187897
10
6.8
10
74
11
52
61
4
1
32
1.24
3187969--3187999
16
1.9
16
93
0
53
70
9
3
16
1.26
3188472--3188504
12
2.8
12
100
0
66
36
9
6
48
1.60
3194350--3194398
15
3.5
15
72
16
50
12
57
0
30
1.36
3195521--3195588
21
3.2
21
73
19
52
38
36
1
23
1.64
3195575--3195620
21
2.1
22
84
11
60
41
32
0
26
1.56
3195654--3195738
21
3.9
21
77
11
98
44
27
1
27
1.62
3195630--3195731
46
2.2
46
94
3
179
43
25
1
29
1.66
3195620--3195707
25
3.6
25
72
16
87
42
26
2
29
1.68
3195649--3195746
7
13.4
7
72
8
61
46
25
1
26
1.59
3195880--3196088
82
2.6
81
80
6
226
18
20
23
38
1.93
3195880--3196057
41
4.4
40
83
5
214
16
20
23
38
1.93
3198772--3198837
36
1.9
33
82
14
80
36
7
1
54
1.38
3199795--3199820
12
2.2
12
100
0
52
0
42
23
34
1.54
3201706--3201783
40
2.0
40
100
0
156
38
11
5
44
1.63
3202745--3202824
32
2.5
33
80
10
94
17
20
20
42
1.89
3205372--3205406
17
2.1
17
100
0
70
51
0
0
48
1.00
3231155--3231223
26
2.7
26
90
2
104
21
27
23
27
1.99
3233896--3234015
43
2.8
43
76
7
127
25
15
25
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3272961--3273023
19
3.3
18
74
12
56
63
1
1
33
1.13
3273051--3273189
51
3.0
44
73
17
127
82
1
1
15
0.82
3273067--3273151
1
85.0
1
76
0
71
87
0
2
10
0.64
3279337--3279381
21
2.1
22
83
4
56
57
0
4
37
1.19
3279877--3280527
324
2.0
328
90
3
1044
42
7
22
26
1.81
3280743--3280775
15
2.1
16
94
5
59
45
0
6
48
1.27
3282639--3282810
87
2.0
86
87
3
247
40
20
8
30
1.82
3283248--3283303
20
2.6
21
83
8
69
28
5
1
64
1.26
3283273--3283379
47
2.2
47
77
9
110
31
1
2
63
1.19
3290877--3290901
13
1.9
13
100
0
50
48
20
8
24
1.76
3293398--3293435
18
2.0
20
90
10
62
23
13
10
52
1.71
3293591--3293801
111
1.9
112
93
1
361
34
16
7
41
1.76
3293964--3294016
15
3.4
15
75
17
54
33
3
3
58
1.34
3294028--3294193
61
2.7
62
80
7
176
40
3
11
44
1.58
3294649--3294673
13
1.9
13
100
0
50
32
20
0
48
1.50
3311986--3312018
15
2.1
16
94
5
59
45
0
6
48
1.27
3313647--3313795
74
1.9
78
82
9
191
43
18
8
28
1.80
3313819--3313876
17
3.4
17
73
15
57
60
1
3
34
1.24
3313885--3313952
33
2.0
34
82
2
84
63
4
1
30
1.23
3314173--3314238
18
3.6
18
74
8
62
36
4
3
56
1.35
3314214--3314256
22
2.0
22
86
9
61
30
4
2
62
1.28
3321781--3321805
13
1.9
13
100
0
50
48
20
8
24
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3324493--3324705
112
1.9
112
94
0
372
34
16
7
41
1.76
3324868--3324919
14
3.4
15
75
21
54
34
3
3
57
1.35
3324931--3325096
61
2.7
62
80
7
176
40
3
11
44
1.58
3325554--3325578
13
1.9
13
100
0
50
32
20
0
48
1.50
3331880--3331908
12
2.3
13
94
5
51
68
0
0
31
0.89
3332956--3333139
99
1.9
99
85
6
257
41
4
33
21
1.73
3336497--3336532
18
2.0
18
94
0
63
47
5
2
44
1.41
3338124--3338327
82
2.5
82
80
7
193
35
22
20
21
1.96
3338181--3338664
41
12.1
40
81
9
355
30
20
25
23
1.98
3338263--3338400
70
2.0
70
88
0
204
33
24
21
20
1.97
3338334--3338750
82
5.2
81
81
9
464
28
19
27
24
1.99
3338333--3338750
123
3.5
122
84
5
457
28
19
27
24
1.99
3338632--3338687
28
2.0
28
92
0
94
25
14
23
37
1.92
3338591--3338728
69
2.0
69
92
0
231
26
18
26
28
1.98
3338660--3338741
41
2.0
41
87
0
119
28
20
28
23
1.99
3338905--3338929
7
3.6
7
100
0
50
16
0
24
60
1.36
3338951--3339026
22
3.4
22
73
12
75
15
1
35
47
1.54
3340316--3340361
7
6.6
7
79
0
56
19
0
36
43
1.51
3340284--3340361
21
3.6
21
76
10
68
24
0
32
43
1.54
3341760--3341815
25
2.2
26
78
9
62
37
7
1
53
1.39
3343746--3343805
21
3.0
21
85
7
81
43
21
0
35
1.53
3343731--3343805
39
1.9
39
88
0
114
42
22
1
33
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3343719--3343853
57
2.4
57
81
2
146
44
22
2
31
1.65
3343730--3343853
48
2.6
48
80
2
142
43
23
1
31
1.63
3343719--3343855
9
14.6
9
73
8
112
44
21
2
31
1.64
3349458--3349581
46
2.8
46
91
3
200
27
22
16
33
1.96
3349458--3349655
37
4.8
45
84
10
198
26
21
16
35
1.94
3349544--3349682
37
3.8
37
95
0
242
25
20
13
39
1.90
3352252--3352309
21
2.8
21
91
0
89
29
22
48
0
1.51
3352251--3352316
21
3.2
22
83
12
77
28
21
50
0
1.49
3352641--3352813
44
4.0
43
80
3
159
21
17
30
30
1.96
3352633--3352974
43
7.9
43
76
6
156
23
20
26
28
1.99
3358864--3358902
17
2.4
16
83
8
51
43
0
2
53
1.14
3366272--3366364
45
2.1
44
95
2
168
26
18
16
38
1.91
3366516--3366750
69
3.4
69
83
0
290
25
17
24
32
1.96
3372811--3372918
47
2.3
49
80
8
123
30
1
9
58
1.40
3372874--3372973
41
2.5
40
81
3
119
31
1
14
54
1.47
3374382--3374468
44
2.0
44
97
0
165
41
24
11
22
1.87
3375037--3375157
41
2.8
40
74
13
100
29
28
18
23
1.97
3379056--3379115
29
2.1
29
100
0
120
33
30
10
26
1.89
3380031--3380088
21
2.5
23
83
16
84
34
10
3
51
1.53
3389440--3389514
37
2.0
37
97
0
141
26
12
21
40
1.88
3390661--3390788
69
1.9
69
91
1
213
43
1
3
50
1.29
3399955--3400045
44
2.0
45
81
12
107
30
21
7
39
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3406184--3406213
14
2.1
14
93
0
51
16
0
36
46
1.47
3409029--3409113
43
2.0
41
84
8
109
50
3
22
23
1.64
3415624--3415763
57
2.4
58
80
7
142
34
16
19
30
1.94
3417594--3417689
48
2.0
48
100
0
192
33
6
27
33
1.82
3418542--3418608
25
2.7
25
80
0
80
25
20
19
34
1.96
3425536--3425675
50
2.8
49
75
6
147
25
20
19
35
1.96
3435416--3435609
102
1.9
102
93
0
334
41
13
10
34
1.79
3436038--3436093
25
2.2
26
96
3
105
32
14
19
33
1.92
3437164--3437197
17
1.9
18
94
5
61
0
29
38
32
1.58
3441499--3441541
21
2.0
21
86
0
59
16
16
18
48
1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259