genome.fa.s9.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  101  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32724881--32725112	55	4.2	55	93	0	356	31	28	13	25	1.94
32732944--32733150	27	7.6	27	94	3	216	30	28	14	26	1.94
32732944--32733175	55	4.2	55	93	0	365	31	29	13	25	1.94
32735654--32735776	46	2.7	44	87	7	158	27	19	29	23	1.98
32737780--32737884	27	3.9	27	82	7	124	18	23	20	38	1.93
32741096--32741206	42	2.6	43	82	4	136	26	18	24	31	1.97
32741056--32741214	43	3.7	43	75	10	155	25	19	25	29	1.98
32741856--32741883	10	2.8	10	100	0	56	17	0	28	53	1.44
32747677--32747716	14	2.9	13	88	7	53	70	0	27	2	1.01
32749564--32749721	68	2.3	67	94	0	262	31	13	30	25	1.93
32749598--32749795	68	2.9	67	82	8	174	33	14	29	22	1.94
32753591--32753719	46	2.8	46	91	0	186	29	27	21	20	1.98
32759862--32760019	68	2.3	68	91	0	253	31	12	29	26	1.93
32759964--32760093	66	1.9	67	83	10	165	34	16	29	20	1.94
32762641--32762677	18	2.1	18	89	0	56	27	24	21	27	1.99
32767947--32768042	29	3.2	29	76	7	95	23	8	18	48	1.75
32768355--32768504	43	3.5	43	88	0	219	26	29	20	24	1.99
32772952--32772977	7	3.7	7	100	0	52	46	38	0	15	1.46
32773135--32773172	7	5.4	7	87	0	58	28	55	0	15	1.41
32773382--32773468	41	2.2	40	85	2	111	65	6	4	22	1.36
32773659--32773835	41	4.4	41	91	4	270	19	22	23	34	1.96
32773659--32773863	80	2.5	79	81	9	234	19	22	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32773659--32773864	41	5.1	40	86	5	213	19	22	22	34	1.96
32774254--32774289	17	2.1	18	94	5	65	44	16	5	33	1.71
32779206--32779253	25	1.9	25	86	0	69	35	22	16	25	1.95
32779290--32779360	20	3.5	20	86	0	88	35	15	19	29	1.93
32779406--32779511	24	4.4	24	90	9	171	30	19	22	27	1.98
32779407--32779504	47	2.1	48	94	5	173	29	20	21	28	1.98
32779718--32779781	31	2.1	31	90	0	101	35	15	23	25	1.94
32781273--32781373	37	2.7	37	96	0	184	23	29	20	25	1.99
32781514--32782614	48	22.8	48	87	5	932	30	28	6	34	1.82
32781514--32782275	96	8.1	96	89	3	1208	30	28	6	34	1.82
32781514--32782275	144	5.4	144	90	4	1226	30	28	6	34	1.82
32782020--32782092	35	2.1	35	97	0	137	28	26	6	38	1.82
32781876--32782614	211	3.9	179	86	8	830	29	28	6	34	1.83
32781972--32782140	83	2.0	83	96	0	311	30	27	7	35	1.83
32782258--32782297	19	2.1	19	100	0	80	37	27	0	35	1.57
32782210--32782344	67	2.0	67	94	0	234	31	28	5	34	1.79
32782162--32782390	115	2.0	115	94	0	404	30	28	6	35	1.81
32782114--32782438	163	2.0	163	95	0	578	30	28	6	34	1.82
32782055--32782614	259	2.2	259	90	5	888	30	28	6	35	1.82
32785922--32786240	40	8.0	40	94	0	530	26	30	22	21	1.99
32788382--32788605	40	5.7	40	84	7	255	25	22	27	25	2.00
32788382--32788605	79	2.8	79	83	9	242	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32788435--32788638	79	2.6	77	81	9	216	26	21	27	25	1.99
32790898--32790923	11	2.4	11	100	0	52	38	15	0	46	1.46
32790909--32791287	48	7.9	48	94	1	652	31	27	6	34	1.82
32796278--32796331	20	2.7	20	91	0	81	22	12	29	35	1.91
32811719--32811898	55	3.3	55	88	0	234	30	28	12	27	1.93
32811719--32811870	27	5.6	27	92	3	223	30	28	12	28	1.93
32819831--32820006	55	3.2	55	88	0	235	31	29	11	27	1.92
32819831--32819982	27	5.6	27	91	3	223	30	28	12	28	1.93
32822226--32822293	30	2.3	30	84	5	84	47	5	17	29	1.71
32825299--32825374	25	3.2	25	62	27	65	43	14	21	21	1.87
32825280--32825546	46	5.8	46	90	1	374	41	14	23	20	1.88
32825605--32825809	102	2.0	102	99	0	401	37	5	21	34	1.78
32826124--32826170	24	2.0	23	91	4	76	10	4	36	48	1.57
32828425--32828449	8	3.1	8	100	0	50	24	0	0	76	0.80
32831154--32831196	18	2.3	19	80	15	54	18	11	25	44	1.84
32833003--32833088	27	3.2	26	86	4	118	18	23	20	37	1.94
32838945--32838987	18	2.3	19	84	15	63	16	6	27	48	1.71
32840786--32840872	27	3.3	26	88	4	129	17	22	21	37	1.93
32843737--32843785	25	2.0	25	83	0	62	36	6	14	42	1.70
32847158--32847191	15	2.3	15	94	0	59	26	20	17	35	1.95
32847228--32847262	12	2.9	12	86	0	52	68	0	17	14	1.21
32849874--32849913	21	2.0	21	85	5	55	22	22	37	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32851957--32852100	38	3.8	38	91	1	209	30	25	22	20	1.98
32860248--32860466	49	4.6	49	74	12	188	23	29	20	26	1.99
32860245--32860418	93	1.8	93	82	6	222	23	29	20	26	1.99
32862842--32862952	27	4.1	26	86	5	132	36	23	22	17	1.94
32862842--32862952	54	2.1	54	86	3	152	36	23	22	17	1.94
32864569--32864678	26	4.2	26	95	0	184	34	24	7	33	1.83
32866559--32866735	40	4.5	40	92	3	288	24	28	23	23	1.99
32866559--32866735	79	2.2	80	91	5	288	24	28	23	23	1.99
32877091--32877268	40	4.5	40	92	2	288	23	27	23	25	2.00
32887885--32887923	17	2.3	17	81	0	51	46	0	17	35	1.49
32894216--32894240	13	1.9	13	100	0	50	32	4	0	64	1.12
32896175--32896420	49	4.9	50	80	2	271	26	19	26	28	1.98
32900695--32900763	28	2.4	28	82	4	84	27	33	24	14	1.94
32902085--32902234	43	3.5	43	76	3	151	32	23	15	28	1.95
32904309--32904361	27	2.0	26	89	7	81	56	7	15	20	1.63
32907953--32908129	48	3.7	47	81	7	196	22	29	20	27	1.98
32907953--32908129	96	1.8	96	90	0	282	22	29	20	27	1.98
32908419--32908463	7	6.4	7	89	0	72	15	0	35	48	1.45
32908425--32908468	14	3.1	14	83	0	61	15	0	36	47	1.46
32911822--32912132	39	8.0	39	92	0	496	22	25	28	23	1.99
32915339--32915402	30	2.1	30	88	5	94	21	37	21	18	1.94
32916179--32916445	48	5.6	48	76	10	201	24	29	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32916189--32916466	96	2.9	96	85	1	344	24	30	18	26	1.98
32917885--32918092	52	4.0	52	85	3	233	35	15	15	32	1.90
32917902--32918113	50	4.1	50	83	4	174	35	16	15	32	1.90
32918139--32918191	19	2.8	19	94	0	97	24	26	15	33	1.95
32921403--32921464	28	2.1	28	85	5	79	4	27	3	64	1.29
32921422--32921509	34	2.5	35	78	16	92	3	26	2	68	1.17
32924702--32924776	19	3.9	19	78	1	78	29	26	10	33	1.90
32924744--32924785	19	2.2	19	86	0	57	30	30	11	26	1.92
32927194--32927262	26	2.7	26	86	4	95	21	15	28	33	1.95
32929101--32929171	28	2.6	28	76	8	74	53	7	8	30	1.58
32943683--32943790	43	2.5	43	76	8	112	25	18	23	33	1.97
32945145--32945361	40	5.5	40	84	6	246	22	22	29	26	1.99
32945145--32945361	80	2.7	80	86	2	278	22	22	29	26	1.99
32952087--32952307	40	5.6	40	85	6	272	22	22	28	26	1.99
32952087--32952307	80	2.8	79	88	2	311	22	22	28	26	1.99
32954865--32954899	15	2.4	14	86	9	52	65	0	11	22	1.24
32956137--32956272	24	5.7	24	80	3	141	23	13	27	34	1.93
32956137--32956273	72	1.9	72	87	3	204	23	13	28	34	1.93
32956137--32956298	72	2.2	72	82	2	191	24	14	29	32	1.94
32957868--32957922	24	2.3	24	96	0	101	12	38	32	16	1.86
32963270--32963392	28	4.4	28	90	2	176	26	13	27	32	1.93
32963295--32963405	28	4.0	27	89	3	134	29	12	25	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32965776--32965809	11	3.1	11	91	0	50	35	5	5	52	1.50
32966076--32966111	15	2.5	14	86	8	54	66	0	11	22	1.22
32967358--32967443	24	3.6	24	78	6	95	25	10	27	36	1.89
32973445--32973483	21	1.9	20	84	5	51	25	23	12	38	1.90
32981372--32981396	9	2.8	9	100	0	50	92	8	0	0	0.40
32992444--32992519	37	2.1	37	100	0	152	23	13	15	47	1.81
32993575--32993644	24	3.0	22	79	10	68	51	7	1	40	1.38
32993774--32993812	6	6.0	6	85	14	51	20	2	0	76	0.90
32993773--32993813	14	3.0	14	89	3	57	21	2	0	75	0.92
32994437--32994489	6	8.5	6	87	8	70	77	5	0	16	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259