genome.fa.s9.2.7.7.80.10.50.1000.236.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  236  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73933175--73933215	21	2.0	21	100	0	82	26	19	53	0	1.45
73933513--73933740	43	5.3	43	86	2	257	26	17	24	31	1.97
73939252--73939299	21	2.3	21	100	0	96	18	22	58	0	1.39
73939980--73940029	20	2.6	19	80	20	59	52	12	0	36	1.39
73939990--73940029	20	2.0	20	90	9	64	50	12	0	37	1.41
73943669--73943711	22	1.9	23	85	4	61	65	0	0	34	0.93
73943685--73943730	17	2.8	17	75	15	51	67	0	0	32	0.91
73943676--73943750	31	2.4	33	78	8	86	60	0	2	37	1.11
73945392--73945416	6	4.2	6	100	0	50	20	0	0	80	0.72
73949759--73949786	3	9.3	3	100	0	56	67	0	0	32	0.91
73958625--73958868	121	2.0	120	95	0	443	35	22	7	34	1.82
73962590--73962641	24	2.2	24	89	0	77	55	9	1	32	1.43
73964560--73964611	24	2.2	24	89	0	77	55	9	1	32	1.43
73965531--73965571	22	1.9	22	85	5	57	46	4	0	48	1.23
73966717--73966760	16	2.8	16	85	0	61	40	6	0	52	1.28
73984011--73984080	35	2.0	35	97	0	131	28	28	7	35	1.84
73993022--73993068	21	2.2	22	92	3	78	21	19	38	21	1.94
73999722--73999797	28	2.7	27	75	15	73	32	17	0	50	1.46
73999750--73999801	21	2.5	20	81	9	68	36	13	0	50	1.42
73999836--73999865	15	1.9	16	93	6	53	13	13	6	66	1.43
74001611--74001637	7	3.9	7	100	0	54	14	40	0	44	1.46
74001272--74001975	362	2.0	359	96	0	1300	24	23	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74002023--74002138	20	5.8	20	72	6	92	39	13	5	41	1.67
74002043--74002138	40	2.4	40	80	0	102	39	13	4	42	1.64
74002062--74002180	60	2.0	60	83	3	150	34	16	5	43	1.70
74002221--74002258	20	1.9	20	88	0	58	44	18	0	36	1.50
74002371--74002583	20	10.8	20	68	7	78	40	17	4	37	1.71
74002660--74002754	20	4.8	20	73	7	68	40	16	4	38	1.68
74002882--74003069	20	9.3	20	75	9	166	39	18	4	38	1.70
74002882--74003069	61	3.1	58	76	6	178	39	18	4	38	1.70
74002882--74003069	81	2.3	81	96	0	340	39	18	4	38	1.70
74014497--74014589	18	5.2	18	88	0	132	31	17	23	27	1.97
74014497--74014589	36	2.6	36	89	0	150	31	17	23	27	1.97
74030795--74030848	25	2.1	27	83	13	69	57	0	1	40	1.09
74031395--74031454	29	2.1	29	84	6	77	28	13	5	53	1.60
74032477--74032503	5	5.4	5	100	0	54	22	59	0	18	1.38
74049820--74049920	39	2.4	42	80	16	127	65	6	27	0	1.18
74050750--74050870	44	2.7	45	83	3	154	36	13	22	28	1.91
74053253--74053280	13	2.2	13	100	0	56	21	7	25	46	1.76
74055247--74055278	8	4.0	8	100	0	64	37	0	0	62	0.95
74055291--74055386	40	2.3	40	89	3	147	63	8	28	0	1.23
74055883--74055940	30	1.9	30	89	0	89	41	3	24	31	1.71
74056273--74056393	44	2.7	45	83	3	154	36	13	22	28	1.91
74058786--74058813	13	2.2	13	100	0	56	21	7	25	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74060782--74060813	8	4.0	8	100	0	64	37	0	0	62	0.95
74060827--74060906	40	2.0	41	95	2	144	62	10	27	0	1.27
74061422--74061479	30	1.9	30	89	0	89	41	3	24	31	1.71
74061812--74061932	44	2.7	45	83	3	154	36	13	22	28	1.91
74063379--74063418	18	2.2	18	86	8	55	67	12	0	20	1.22
74063502--74063562	30	2.0	30	96	0	113	57	11	3	27	1.49
74065314--74065362	25	2.0	25	84	4	64	24	2	8	65	1.31
74065910--74065977	31	2.3	30	82	10	77	47	20	10	22	1.80
74066104--74066143	6	6.7	6	91	0	53	80	0	15	5	0.88
74069273--74069573	46	6.7	46	85	6	386	37	15	24	22	1.93
74069224--74069529	84	3.5	84	91	3	459	35	15	24	23	1.94
74070686--74070762	31	2.5	31	95	0	145	14	31	33	20	1.93
74071409--74071436	10	2.8	10	100	0	56	60	17	0	21	1.36
74073588--74073612	9	2.8	9	100	0	50	8	24	0	68	1.16
74073739--74073807	31	2.3	31	82	7	79	21	11	20	46	1.82
74079091--74079130	14	2.9	14	84	0	53	32	7	17	42	1.77
74079114--74079153	20	2.0	20	90	0	62	27	10	12	50	1.72
74079099--74079165	34	1.9	35	90	3	109	31	8	13	46	1.74
74079778--74079816	18	2.2	18	100	0	78	46	10	0	43	1.37
74081492--74081531	19	2.1	19	95	0	71	47	7	45	0	1.31
74084504--74084532	8	3.6	8	100	0	58	37	0	0	62	0.96
74085848--74085904	15	3.9	15	88	2	89	35	0	12	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74086276--74086383	21	5.0	22	82	5	114	16	23	24	36	1.94
74086288--74086369	21	3.8	21	90	3	119	14	25	26	32	1.95
74086275--74086383	42	2.5	43	85	4	157	17	22	23	35	1.95
74086545--74086587	20	2.2	20	88	12	63	51	0	13	34	1.42
74088244--74088303	28	2.2	26	77	11	66	28	25	11	35	1.91
74091081--74091344	130	2.0	130	81	4	300	28	18	18	35	1.94
74102274--74102354	24	3.4	24	73	13	85	16	28	20	34	1.94
74106696--74106834	69	2.0	69	97	0	260	26	13	32	27	1.94
74113239--74113273	6	5.7	6	90	6	52	14	0	2	82	0.77
74114018--74114042	12	2.1	12	100	0	50	44	0	0	56	0.99
74116416--74116475	26	2.2	28	82	5	70	45	0	0	55	0.99
74119387--74119424	19	2.0	20	85	15	53	55	5	2	36	1.37
74122306--74122338	6	5.5	6	100	0	66	69	0	30	0	0.88
74126197--74126230	16	2.2	15	89	5	50	67	2	5	23	1.26
74127180--74127249	26	2.8	25	80	4	86	30	4	17	48	1.66
74127899--74127965	31	2.2	32	81	10	86	41	16	13	28	1.86
74128471--74128556	45	1.9	46	90	4	140	53	2	4	39	1.34
74128936--74128985	26	2.0	24	88	7	73	64	6	0	30	1.18
74130806--74130880	32	2.3	33	82	8	84	36	1	6	56	1.34
74130806--74130880	31	2.4	31	82	8	80	36	1	6	56	1.34
74131347--74131418	35	2.1	34	82	12	87	23	15	5	55	1.61
74131798--74131859	30	2.1	30	90	0	97	56	12	4	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74145324--74145364	21	2.0	21	95	0	73	26	7	39	26	1.82
74159092--74159327	91	2.6	90	79	2	222	30	15	22	32	1.95
74159092--74159339	90	2.7	90	76	6	207	29	15	21	33	1.94
74164536--74164608	36	2.0	37	91	2	121	15	17	15	52	1.76
74166612--74166637	12	2.2	12	100	0	52	73	0	11	15	1.11
74169605--74169853	50	4.8	50	84	4	275	20	28	24	26	1.99
74169604--74169853	100	2.4	104	86	6	348	20	28	24	26	1.99
74169948--74169979	13	2.5	13	94	0	55	56	12	0	31	1.37
74170189--74170248	30	2.0	30	83	3	77	30	23	3	43	1.70
74173451--74173484	11	3.0	12	87	12	54	32	0	0	67	0.91
74181970--74182000	16	1.9	16	93	0	53	41	0	3	54	1.16
74182080--74182110	12	2.6	12	94	0	53	74	0	25	0	0.82
74182815--74182868	16	3.4	16	75	14	58	40	0	22	37	1.54
74197807--74197885	39	2.0	39	95	0	140	43	5	8	43	1.57
74207487--74207531	23	2.0	23	100	0	90	64	13	8	13	1.49
74211086--74211117	16	1.9	17	93	6	57	43	0	0	56	0.99
74217744--74217802	9	6.8	9	77	14	54	28	0	1	69	0.98
74217742--74217785	15	2.8	15	86	6	61	29	0	0	70	0.88
74217742--74217785	8	5.5	8	78	10	54	29	0	0	70	0.88
74217742--74217802	16	3.5	17	82	15	72	29	0	1	68	0.99
74218013--74218080	16	4.2	16	94	0	118	27	0	36	35	1.58
74218013--74218080	32	2.1	32	100	0	136	27	0	36	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74218061--74218170	45	2.6	41	78	9	116	32	5	29	32	1.80
74218304--74218345	15	2.9	15	82	10	52	52	0	0	47	1.00
74218603--74218655	27	2.1	27	82	10	67	43	0	0	56	0.99
74227411--74227439	14	2.1	14	100	0	58	20	31	13	34	1.92
74243978--74244033	27	2.1	27	100	0	112	32	17	10	39	1.84
74250456--74250486	11	2.7	11	95	5	53	38	0	29	32	1.57
74250777--74250812	13	3.0	13	84	15	51	38	50	0	11	1.38
74250837--74250883	6	7.5	6	86	9	67	78	4	0	17	0.90
74250837--74250877	20	2.0	20	85	0	55	78	4	0	17	0.93
74250903--74250979	9	8.6	9	82	0	91	27	7	19	45	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259