genome.fa.s9.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  37  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11002223--11002332	39	2.8	40	90	1	168	27	26	20	25	1.99
11002223--11002405	40	4.6	39	82	4	179	26	26	21	25	1.99
11002337--11002414	40	1.9	41	82	10	97	26	28	21	23	1.99
11010088--11010257	40	4.3	40	90	0	216	26	27	21	25	1.99
11010088--11010234	79	1.9	80	88	1	224	27	27	20	25	1.99
11010080--11010310	40	5.8	40	82	6	191	25	27	20	25	1.99
11015396--11015583	40	4.7	40	83	2	216	34	26	14	25	1.94
11028218--11028331	18	6.3	18	79	8	97	35	13	13	38	1.83
11028232--11028341	54	2.0	54	85	3	150	33	14	13	38	1.86
11034892--11035067	46	3.8	46	79	12	207	21	21	28	28	1.98
11034889--11035060	93	1.8	93	94	0	308	21	21	29	27	1.99
11036723--11036775	15	3.5	15	100	0	106	13	32	47	7	1.70
11036723--11036782	15	4.1	14	93	4	77	11	33	46	8	1.70
11040298--11040470	46	3.7	46	75	10	190	23	19	26	30	1.98
11040295--11040465	93	1.8	93	91	0	279	22	19	27	29	1.98
11057317--11057488	93	1.8	93	94	0	308	27	29	21	21	1.99
11057310--11057485	46	3.8	46	79	10	205	28	28	21	21	1.98
11063171--11063240	30	2.3	30	80	9	81	24	28	28	18	1.98
11068453--11068634	79	2.3	80	80	8	201	26	28	20	24	1.99
11068434--11068637	40	5.1	40	80	8	220	25	27	21	24	1.99
11073639--11073778	42	3.3	43	74	8	108	28	17	24	30	1.97
11079555--11079613	26	2.2	27	87	3	84	32	23	13	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11086169--11086322	28	5.5	28	91	1	229	27	12	27	33	1.92
11093803--11093828	12	2.2	12	100	0	52	50	7	0	42	1.31
11094293--11094418	28	4.5	28	95	1	209	26	13	28	31	1.94
11095921--11095956	1	36.0	1	94	0	63	97	0	2	0	0.18
11108007--11108157	28	5.4	28	92	1	223	33	28	11	25	1.92
11114867--11114910	20	2.1	21	83	4	54	20	6	15	56	1.62
11120378--11120499	25	4.8	24	71	18	70	31	4	2	62	1.27
11120384--11120477	16	6.1	15	75	16	70	31	4	2	61	1.27
11120427--11120466	17	2.4	17	83	4	55	30	7	0	62	1.23
11120556--11120615	21	3.2	17	78	19	59	31	3	1	63	1.20
11120590--11120624	17	2.2	17	90	10	56	28	5	0	65	1.15
11120885--11120943	17	3.6	16	74	21	59	33	3	0	62	1.12
11129807--11129954	39	3.8	39	86	1	190	29	27	19	23	1.98
11147338--11147367	14	2.1	14	93	0	51	46	36	0	16	1.47
11153337--11153520	40	4.6	41	76	10	186	26	26	22	25	2.00
11161296--11161480	79	2.3	81	83	7	227	24	27	22	24	2.00
11161296--11161480	40	4.7	40	82	7	225	24	27	22	24	2.00
11169642--11169691	26	2.0	25	81	18	59	34	2	4	60	1.27
11169660--11169725	20	3.0	22	74	14	66	31	4	1	62	1.25
11169672--11169759	33	2.7	34	78	16	89	31	5	1	61	1.27
11169814--11169885	18	4.0	18	78	16	62	30	4	1	63	1.21
11169814--11169882	20	3.8	18	78	14	63	30	4	1	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11170143--11170201	17	3.6	16	74	21	59	33	3	0	62	1.12
11174739--11174787	25	2.0	24	96	4	89	24	8	26	40	1.83
11174742--11174795	25	2.2	25	86	3	74	27	5	29	37	1.80
11177552--11177616	21	3.1	21	85	10	73	69	1	6	23	1.20
11177704--11177732	15	1.9	15	100	0	58	68	6	3	20	1.27
11177756--11177828	5	15.8	5	77	11	68	76	0	0	23	0.78
11177756--11177823	26	2.8	25	82	12	79	76	0	0	23	0.79
11182876--11182904	14	2.1	14	100	0	58	37	20	6	34	1.80
11184418--11184463	24	1.9	24	81	0	56	28	2	2	67	1.14
11185472--11185514	22	2.0	22	86	9	61	51	0	6	41	1.29
11187617--11187682	29	2.3	29	84	5	80	43	1	24	30	1.63
11188094--11188184	40	2.3	40	86	7	123	24	15	26	34	1.95
11188173--11188274	41	2.5	42	82	4	109	26	15	26	31	1.96
11199260--11199305	20	2.3	20	92	0	74	43	28	21	6	1.77
11222359--11222470	27	4.2	26	87	7	152	36	23	24	16	1.94
11222359--11222470	54	2.1	54	89	3	172	36	23	24	16	1.94
11225559--11225647	30	2.8	32	77	12	94	31	4	1	62	1.22
11225566--11225620	24	2.3	24	81	12	69	27	3	1	67	1.17
11225611--11225643	17	1.9	17	93	0	57	36	6	0	57	1.23
11226154--11226288	71	1.9	73	84	6	186	30	5	9	54	1.57
11226154--11226304	71	2.1	73	82	8	184	31	5	9	52	1.57
11227393--11227451	22	2.6	24	76	13	61	38	10	23	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11250824--11250857	17	2.0	17	88	0	50	52	20	8	17	1.71
11252367--11252408	21	2.0	21	85	0	57	35	0	9	54	1.33
11253393--11253467	37	2.0	37	92	0	123	20	40	24	16	1.91
11254436--11254460	13	1.9	13	100	0	50	32	0	8	60	1.26
11262382--11262719	180	1.9	180	89	1	534	33	19	8	39	1.81
11263046--11263077	16	2.0	16	93	0	55	34	18	0	46	1.49
11263277--11263615	50	6.7	50	77	5	292	31	27	15	25	1.95
11263286--11263563	150	1.9	150	86	1	405	31	27	15	25	1.95
11266199--11266243	15	3.0	15	83	0	54	55	13	17	13	1.69
11268398--11268676	50	5.5	50	81	3	283	31	26	17	24	1.97
11268297--11268676	151	2.5	151	83	2	440	31	24	18	25	1.98
11268443--11268680	101	2.3	102	85	2	318	31	26	17	23	1.97
11269031--11269077	19	2.3	20	82	10	60	48	14	0	36	1.44
11275168--11275198	12	2.7	12	95	5	55	74	0	6	19	1.03
11277210--11277329	55	2.2	55	79	5	134	16	31	27	24	1.96
11281923--11281965	21	2.0	21	95	0	77	25	18	37	18	1.94
11284534--11284565	15	2.2	15	94	5	57	3	43	0	53	1.16
11287444--11287503	29	2.1	29	100	0	120	23	10	3	63	1.40
11291147--11291182	18	2.1	17	89	5	54	61	0	8	30	1.26
11298124--11298445	47	6.5	47	84	8	358	29	28	8	34	1.86
11298175--11298445	49	5.4	54	84	10	282	30	26	7	34	1.84
11298233--11298445	49	4.4	49	90	4	328	30	26	7	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11298124--11298445	104	3.3	96	83	8	407	29	28	8	34	1.86
11299485--11299772	40	7.2	40	91	0	461	25	27	22	24	2.00
11301996--11302513	49	10.6	47	89	6	712	28	29	8	33	1.86
11301996--11302513	145	3.5	144	91	4	797	28	29	8	33	1.86
11317664--11317768	40	2.7	39	86	4	122	22	18	24	34	1.96
11319401--11319425	2	12.5	2	100	0	50	0	0	48	52	1.00
11320896--11320930	17	2.1	17	88	0	52	2	0	14	82	0.77
11321687--11321754	34	2.0	34	94	0	118	17	17	5	58	1.57
11323253--11323564	44	6.7	46	74	12	253	28	20	30	20	1.98
11330762--11331023	44	5.7	44	74	14	217	28	19	29	22	1.98
11330809--11331073	47	5.6	48	74	12	210	30	19	28	21	1.98
11333473--11333515	17	2.5	17	96	0	77	23	20	30	25	1.99
11339181--11339304	53	2.4	53	80	4	135	29	31	17	21	1.96
11341970--11342012	22	1.9	23	81	13	54	44	2	2	51	1.27
11345550--11345585	14	2.6	14	90	0	63	52	8	19	19	1.70
11353852--11354056	3	69.7	3	68	9	91	30	7	1	59	1.37
11354219--11354421	3	68.7	3	69	13	127	31	7	0	60	1.32
11365377--11365553	27	6.5	27	85	3	212	30	27	14	27	1.95
11365397--11365552	82	1.9	81	89	3	242	30	28	14	26	1.95
11371111--11371189	37	2.1	37	90	0	122	25	31	18	24	1.98
11371308--11371616	47	6.6	47	90	1	424	27	30	9	32	1.89
11382002--11382346	40	8.6	40	93	0	582	28	20	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11392691--11393006	64	4.8	64	81	5	287	24	28	15	31	1.96
11392691--11393007	132	2.4	127	78	6	314	24	28	15	30	1.96
11397714--11397823	51	2.2	50	83	8	143	46	17	22	13	1.83
11399321--11399528	113	1.8	113	89	2	328	34	11	16	37	1.85
11412346--11412483	67	2.1	67	88	0	204	19	28	21	30	1.98
11412431--11412492	27	2.3	26	81	8	70	20	22	22	33	1.97
11429034--11429071	14	2.9	13	81	11	51	57	10	13	18	1.63
11429798--11430065	44	6.0	44	69	9	141	26	16	29	27	1.97
11429762--11430171	178	2.3	178	91	0	642	26	17	28	27	1.98
11433602--11433655	26	2.1	26	82	6	65	55	5	3	35	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259