genome.fa.s9.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  143  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46559207--46559622	47	8.8	47	95	2	742	30	29	8	32	1.87
46559207--46559765	143	3.8	141	89	7	776	30	29	8	32	1.87
46559207--46559761	190	2.8	190	90	6	813	30	29	8	32	1.87
46559597--46559646	24	2.1	24	100	0	100	26	38	8	28	1.84
46559550--46559693	71	2.0	71	98	0	279	29	32	7	30	1.85
46559454--46559765	167	1.9	165	96	1	579	29	29	8	32	1.86
46559621--46559765	47	3.1	47	98	0	281	29	29	8	32	1.86
46559501--46559738	118	2.0	119	97	1	451	29	31	7	31	1.86
46595728--46595798	28	2.5	28	88	0	97	29	11	28	30	1.91
46595745--46595806	28	2.2	28	85	0	88	37	8	24	30	1.84
46603651--46603713	23	2.7	23	97	0	117	44	33	4	17	1.70
46603665--46603768	28	3.9	26	83	10	124	46	32	2	18	1.64
46603631--46603744	23	4.7	23	78	12	95	47	32	3	16	1.64
46605995--46606066	35	2.1	35	100	0	144	61	11	8	19	1.54
46615055--46615151	40	2.4	40	87	0	131	21	15	28	34	1.94
46615132--46615202	28	2.5	28	86	0	106	22	12	32	32	1.92
46617909--46618268	27	13.3	27	78	7	214	36	20	9	33	1.85
46617909--46618043	55	2.5	55	85	7	193	39	20	8	31	1.82
46618155--46618335	54	3.3	55	80	7	165	42	20	7	29	1.80
46618234--46618341	27	3.9	27	72	13	85	43	18	7	30	1.77
46618382--46618455	27	2.7	27	76	12	71	37	20	20	21	1.94
46618395--46618459	27	2.4	27	82	5	78	35	18	24	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46619083--46619130	25	1.9	25	95	0	87	27	18	20	33	1.96
46619166--46619232	20	3.3	20	89	4	100	37	11	19	31	1.88
46619177--46619232	11	5.5	11	75	16	66	37	12	19	30	1.89
46619282--46619404	52	2.4	51	93	2	212	26	23	22	27	2.00
46619282--46619404	26	4.8	26	89	1	178	26	23	22	27	2.00
46619549--46619640	42	2.2	42	96	0	166	27	11	21	39	1.89
46619664--46619742	31	2.5	31	95	0	149	29	18	25	26	1.98
46626145--46626251	40	2.7	40	85	1	135	20	15	28	35	1.94
46626232--46626308	28	2.8	28	85	0	118	23	12	32	31	1.92
46631220--46631276	24	2.3	25	85	8	73	17	17	19	45	1.86
46639470--46639519	23	2.2	23	86	13	68	42	20	14	24	1.88
46639555--46639659	27	3.9	27	74	9	88	23	18	17	40	1.90
46639571--46639682	27	4.1	27	77	2	82	24	15	19	41	1.90
46659452--46659528	40	1.9	40	89	5	120	25	25	18	29	1.98
46661856--46662008	42	3.7	42	74	1	137	26	24	16	31	1.97
46670536--46670651	58	2.0	58	96	0	214	42	19	6	31	1.76
46687330--46687358	14	2.1	14	100	0	58	48	0	13	37	1.43
46689830--46689879	26	1.9	26	91	0	82	18	28	24	30	1.97
46703413--46703667	40	6.4	40	89	5	308	23	22	29	24	1.99
46703413--46703667	79	3.2	79	85	6	306	23	22	29	24	1.99
46703413--46703667	119	2.2	119	84	6	322	23	22	29	24	1.99
46735612--46735829	40	5.5	39	79	8	176	24	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46735612--46735829	79	2.8	78	77	10	219	24	20	26	27	1.99
46738004--46738057	27	2.0	27	82	7	65	29	18	18	33	1.95
46738197--46738246	26	1.9	26	95	0	91	18	26	24	32	1.97
46740546--46740570	12	2.1	12	100	0	50	60	0	24	16	1.36
46745281--46745338	27	2.1	27	80	0	62	24	22	13	39	1.90
46745725--46745851	68	1.9	68	88	3	193	38	26	10	24	1.87
46745721--46745872	68	2.2	68	82	2	189	38	24	11	26	1.89
46745897--46745960	17	3.8	17	75	6	58	50	21	7	20	1.73
46751666--46751868	42	4.7	42	77	4	156	28	25	17	29	1.97
46751666--46751837	84	2.0	84	79	2	184	28	26	16	28	1.97
46784027--46784282	40	6.4	40	90	2	324	24	29	23	23	1.99
46791165--46791262	28	3.5	28	87	2	126	31	27	13	27	1.94
46795683--46795939	40	6.5	40	91	2	378	24	28	23	22	2.00
46799304--46799359	22	2.6	21	81	10	60	35	16	10	37	1.83
46800096--46800188	46	2.0	48	89	4	145	40	25	11	21	1.87
46801747--46801779	17	2.0	17	88	5	50	42	6	18	33	1.75
46803122--46803167	16	2.9	16	83	6	58	43	0	4	52	1.21
46805229--46805254	7	3.7	7	100	0	52	26	0	0	73	0.84
46806424--46806487	32	2.0	32	96	0	119	35	15	7	40	1.76
46810421--46810465	20	2.3	20	88	3	65	28	17	26	26	1.98
46810486--46810630	61	2.4	61	82	8	161	26	19	26	28	1.99
46813036--46813066	14	2.2	14	100	0	62	48	6	19	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46815072--46815212	27	5.2	27	80	11	173	18	24	21	34	1.96
46815069--46815212	54	2.7	54	92	2	236	18	25	22	34	1.96
46818650--46818685	18	2.0	18	88	0	54	25	25	13	36	1.93
46823191--46823247	28	2.0	28	100	0	114	40	21	3	35	1.70
46823605--46823771	48	3.5	48	78	4	176	23	25	19	31	1.98
46823508--46823759	94	2.6	96	81	2	265	23	26	19	30	1.98
46837344--46837409	26	2.5	26	73	9	62	28	13	24	33	1.93
46837655--46837679	8	3.1	8	100	0	50	0	24	24	52	1.48
46838215--46838374	79	2.0	79	100	0	320	30	17	30	21	1.96
46839368--46839421	27	2.0	27	82	7	65	57	7	0	35	1.27
46842184--46842224	15	3.1	14	83	16	52	63	0	0	36	0.95
46846655--46846795	44	3.3	43	80	8	146	32	24	17	25	1.96
46854663--46854830	44	3.7	46	82	7	164	24	29	19	27	1.98
46854708--46854830	47	2.6	46	85	7	158	24	28	18	28	1.98
46855548--46855572	12	2.1	12	100	0	50	60	16	8	16	1.58
46860560--46860605	22	2.1	22	95	0	83	41	36	6	15	1.73
46862178--46862495	47	6.8	45	76	14	245	24	28	19	27	1.98
46862186--46862494	141	2.2	140	80	6	329	24	28	19	27	1.98
46862178--46862495	94	3.4	92	76	11	304	24	28	19	27	1.98
46867168--46867253	43	2.0	43	82	13	106	24	18	29	27	1.98
46871200--46871244	21	2.1	21	100	0	90	40	24	8	26	1.84
46876527--46876586	23	2.6	22	77	15	68	46	20	15	18	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46880834--46880877	22	2.0	22	100	0	88	27	22	27	22	1.99
46888265--46888486	47	4.7	46	71	9	155	25	21	30	22	1.99
46893166--46893285	27	4.4	27	91	0	186	40	16	17	25	1.90
46893644--46893753	33	3.3	34	76	10	104	23	22	24	29	1.99
46899668--46899778	43	2.6	42	77	8	127	31	16	25	27	1.96
46901845--46901879	17	2.0	18	88	5	54	40	0	20	40	1.52
46907822--46908100	50	5.5	50	79	4	265	31	27	16	24	1.96
46907872--46908053	101	1.8	101	86	0	265	29	26	19	24	1.98
46922013--46922037	12	2.1	12	100	0	50	24	12	8	56	1.62
46922915--46923177	40	6.6	40	86	3	309	26	28	20	24	1.99
46930858--46931120	40	6.6	40	88	3	325	26	27	20	24	1.99
46933473--46933564	27	3.4	27	87	0	130	28	20	7	43	1.79
46933556--46933698	27	5.3	27	67	7	85	36	23	11	29	1.89
46933616--46933720	54	1.9	54	81	7	124	39	23	7	29	1.83
46933731--46933782	27	1.9	27	88	7	79	40	13	11	34	1.81
46933823--46933900	27	2.9	27	77	11	88	39	20	19	20	1.92
46934711--46934769	25	2.4	25	91	5	93	27	27	25	20	1.99
46934928--46935017	42	2.1	42	91	0	144	30	13	21	35	1.91
46942089--46942157	27	2.6	27	90	0	111	33	18	20	27	1.96
46942150--46942483	27	12.4	27	79	6	169	37	19	11	30	1.88
46942142--46942290	53	2.8	52	79	7	129	39	22	9	28	1.85
46942322--46942461	55	2.6	54	79	5	156	37	15	15	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46942142--46942483	54	6.4	54	75	4	242	37	19	11	30	1.88
46942720--46942841	41	3.0	41	87	0	172	22	21	28	27	1.99
46942984--46943048	22	3.0	22	75	8	69	20	21	24	33	1.97
46943041--46943102	27	2.3	27	91	0	97	25	17	17	38	1.92
46943280--46943322	22	2.0	22	95	0	77	18	23	16	41	1.89
46944094--46944173	34	2.4	34	84	0	97	35	20	20	25	1.96
46948604--46948665	31	2.1	30	82	17	76	43	8	17	30	1.78
46951133--46951262	48	2.7	48	85	2	163	36	27	14	20	1.92
46953160--46953189	15	2.0	15	100	0	60	40	26	13	20	1.89
46953944--46953988	22	2.0	22	87	8	65	53	0	6	40	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259