genome.fa.s9.2.7.7.80.10.50.1000.237.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  237  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74251438--74251478	21	2.0	21	85	9	57	39	2	12	46	1.54
74251915--74252002	33	2.7	33	98	0	167	26	19	22	31	1.98
74255870--74256048	39	4.6	39	92	0	286	11	24	24	39	1.88
74273528--74273570	18	2.4	18	88	0	59	58	4	6	30	1.45
74274642--74274713	31	2.4	31	79	11	87	52	9	2	34	1.49
74275169--74275215	16	3.1	16	72	12	53	36	6	0	57	1.24
74277425--74277468	23	1.9	23	90	0	70	22	15	9	52	1.71
74278758--74278826	16	4.3	16	90	0	111	40	5	31	21	1.77
74278806--74278901	44	2.1	46	90	3	151	29	4	29	37	1.76
74278808--74278912	44	2.5	41	77	18	124	30	4	28	36	1.78
74279060--74279427	117	3.1	117	96	0	682	52	3	1	41	1.30
74279160--74279193	17	2.0	17	100	0	68	58	0	0	41	0.98
74279272--74279310	17	2.5	15	84	15	60	61	0	0	38	0.96
74279277--74279310	17	2.0	17	100	0	68	58	0	0	41	0.98
74279343--74279382	20	2.0	21	85	5	55	60	5	0	35	1.19
74279394--74279427	17	2.0	17	94	0	59	55	2	0	41	1.15
74279403--74279492	23	3.9	22	72	18	67	53	5	0	41	1.24
74279443--74279506	32	2.0	32	81	0	74	48	3	0	48	1.17
74281926--74281984	29	2.0	29	100	0	118	27	10	10	52	1.67
74289970--74290020	22	2.4	22	90	3	77	52	1	5	39	1.37
74290558--74290599	13	3.2	13	89	3	57	30	4	0	64	1.14
74295749--74295803	24	2.2	26	81	12	71	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74295941--74296035	45	2.1	45	88	1	138	32	27	5	34	1.79
74296016--74296067	16	3.2	16	94	0	86	34	36	0	28	1.58
74297028--74297110	3	27.3	3	73	20	59	65	1	3	30	1.17
74297028--74297111	12	6.8	12	77	16	75	65	1	3	29	1.17
74297033--74297092	18	3.2	18	82	13	75	63	1	3	31	1.20
74297503--74297571	22	3.0	22	76	15	66	17	0	44	37	1.49
74297553--74297611	9	6.1	9	75	14	55	15	0	47	37	1.45
74297553--74297611	18	3.1	18	77	17	64	15	0	47	37	1.45
74297543--74297620	31	2.5	31	93	0	129	16	0	46	37	1.48
74297503--74297593	13	6.9	13	71	19	73	16	0	46	37	1.47
74297901--74299284	132	10.5	132	93	0	2340	26	24	18	30	1.98
74299309--74299797	205	2.4	205	91	0	780	29	21	18	30	1.97
74299942--74300066	61	2.0	63	86	7	175	35	12	17	35	1.87
74301192--74301228	11	3.3	11	88	7	56	0	0	13	86	0.57
74304461--74304507	19	2.5	20	89	6	71	42	8	21	27	1.81
74307324--74307404	12	6.8	12	70	12	60	64	3	3	28	1.28
74307363--74307414	15	3.6	14	78	2	50	75	1	1	21	1.00
74307793--74307873	31	2.6	31	94	0	135	17	0	45	37	1.48
74314564--74314602	16	2.5	15	84	12	51	56	0	5	38	1.22
74314806--74314831	6	4.3	6	100	0	52	84	0	15	0	0.62
74316011--74316063	18	2.9	18	88	0	70	33	9	16	39	1.81
74316013--74316074	18	3.5	16	82	8	52	35	9	17	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74322925--74322969	23	2.0	21	83	8	54	31	4	0	64	1.13
74323252--74323294	20	2.2	20	88	12	63	37	0	6	55	1.27
74323249--74323299	20	2.5	20	81	9	59	35	0	7	56	1.28
74325167--74325233	32	2.1	31	81	13	75	44	2	1	50	1.26
74333284--74333349	23	2.6	26	72	16	75	42	3	0	54	1.15
74334654--74334761	44	2.4	44	87	3	144	29	23	13	33	1.93
74337939--74337970	2	16.0	2	100	0	64	0	50	0	50	1.00
74352896--74353049	28	5.5	28	96	0	265	25	11	29	33	1.91
74352871--74353049	56	3.2	56	91	1	270	25	11	29	34	1.91
74355834--74355885	15	3.6	14	80	10	52	61	0	1	36	1.07
74355840--74355870	15	2.1	15	93	0	53	64	0	0	35	0.94
74361357--74361394	14	2.8	14	88	4	51	73	0	26	0	0.83
74361957--74363207	153	8.2	153	93	3	2064	58	8	5	27	1.50
74362411--74362450	12	3.4	11	86	13	53	75	2	0	22	0.93
74362986--74363063	31	2.6	31	68	11	72	69	2	2	25	1.14
74374010--74374061	25	2.1	25	100	0	104	36	19	11	32	1.87
74382969--74383022	28	1.9	28	88	0	81	46	5	7	40	1.55
74389261--74389312	21	2.5	20	84	6	68	63	5	1	28	1.28
74392637--74392665	12	2.4	12	100	0	58	79	6	0	13	0.93
74393409--74393514	44	2.4	45	80	4	117	29	30	18	21	1.97
74393543--74394335	111	7.1	111	92	1	1268	31	17	21	29	1.96
74408468--74408966	249	2.0	250	97	0	946	35	19	13	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74411224--74411590	46	7.6	49	86	8	431	34	14	22	29	1.93
74411238--74411590	196	1.8	196	92	0	598	34	14	22	28	1.93
74411554--74411663	37	3.0	37	94	1	195	37	16	21	24	1.93
74411224--74411579	150	2.4	149	89	4	458	34	14	21	29	1.93
74412573--74412608	18	1.9	18	88	5	54	69	2	0	27	1.02
74413081--74413114	3	11.0	3	93	6	59	67	0	0	32	0.91
74413080--74413113	16	2.1	16	100	0	68	70	0	0	29	0.87
74415228--74415263	14	2.6	13	87	12	54	2	22	0	75	0.94
74415839--74415870	16	2.0	16	100	0	64	50	31	6	12	1.65
74416558--74416601	20	2.2	20	83	4	52	61	6	2	29	1.34
74416575--74416613	21	1.9	21	84	5	53	64	7	0	28	1.21
74418691--74418867	50	3.5	50	86	3	223	36	16	20	25	1.94
74418845--74419015	31	5.5	31	87	0	243	30	18	25	26	1.98
74419021--74419049	7	4.1	7	100	0	58	44	13	27	13	1.82
74420392--74420499	44	2.4	44	87	3	144	29	23	13	33	1.93
74427424--74427531	44	2.4	44	87	3	144	29	23	13	33	1.93
74431155--74431187	11	2.9	12	86	13	52	33	0	0	66	0.92
74431312--74431369	30	1.9	30	89	0	89	56	8	5	29	1.51
74432402--74432428	4	6.8	4	100	0	54	22	0	0	77	0.76
74432557--74432582	6	4.3	6	100	0	52	0	80	0	19	0.71
74440317--74440341	11	2.3	11	100	0	50	92	0	8	0	0.40
74446137--74446163	8	3.4	8	100	0	54	11	0	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74452381--74452406	13	2.0	13	100	0	52	15	38	15	30	1.88
74465793--74465827	10	3.6	10	92	7	63	62	0	0	37	0.95
74465777--74465827	9	5.8	9	77	13	61	66	0	0	33	0.92
74476044--74476098	28	2.0	28	86	10	78	61	3	1	32	1.24
74485492--74485522	8	4.0	8	95	4	55	0	35	0	64	0.94
74489713--74489882	85	2.0	85	96	0	313	40	15	11	32	1.83
74492579--74492612	16	2.1	16	94	0	59	41	0	2	55	1.15
74493887--74493938	27	1.9	27	100	0	104	48	23	0	28	1.51
74500569--74500635	33	2.1	33	82	2	82	46	7	16	29	1.74
74509235--74509262	5	5.6	5	100	0	56	82	0	0	17	0.68
74511526--74511603	20	4.0	20	77	3	59	43	12	2	41	1.56
74523030--74523072	20	2.1	21	86	4	61	41	0	0	58	0.98
74524480--74524627	58	2.6	58	94	3	257	20	20	17	41	1.91
74524985--74525039	30	1.9	28	85	10	76	27	7	18	47	1.74
74532964--74533015	25	2.0	28	85	11	74	50	5	19	25	1.69
74539673--74539911	48	5.0	48	85	3	293	26	17	28	28	1.98
74539673--74539947	95	2.9	96	84	4	315	26	17	28	27	1.98
74539681--74539947	48	5.6	48	84	2	279	27	17	28	27	1.97
74541587--74541615	14	2.1	14	100	0	58	10	13	13	62	1.55
74543398--74543441	15	2.9	15	89	3	61	20	0	0	79	0.73
74548898--74548951	27	2.0	27	92	0	90	20	24	9	46	1.79
74555271--74555472	107	1.9	104	87	5	298	40	5	15	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74561842--74561902	32	1.9	32	93	0	104	14	52	18	14	1.75
74587169--74587201	17	2.0	17	88	5	50	27	0	6	66	1.15
74587174--74587236	18	3.6	18	80	8	58	30	0	4	65	1.13
74597625--74597873	50	4.8	50	85	4	284	20	29	24	26	1.99
74597624--74597873	100	2.4	104	88	6	357	20	29	24	26	1.99
74597968--74597999	13	2.5	13	94	0	55	56	12	0	31	1.37
74598196--74598223	4	7.0	4	100	0	56	0	25	0	75	0.81
74598273--74598312	15	2.6	15	88	4	53	5	20	2	72	1.15
74598323--74598394	5	14.4	5	75	20	62	56	4	0	38	1.18
74598324--74598366	19	2.3	19	92	8	70	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259