genome.fa.s9.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  155  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50812362--50812439	29	2.7	28	86	11	104	26	15	29	28	1.96
50820351--50820423	29	2.5	28	84	10	94	27	13	30	28	1.94
50822000--50822033	18	1.9	17	88	5	50	52	14	11	20	1.73
50822021--50822189	6	27.3	6	73	14	112	47	15	17	19	1.82
50822029--50822161	19	6.8	19	67	21	78	48	15	17	18	1.81
50822063--50822126	25	2.6	25	89	0	101	50	14	17	18	1.79
50822021--50822098	37	2.1	37	85	0	102	51	14	15	19	1.77
50822070--50822167	31	3.2	31	69	16	94	45	15	18	20	1.85
50822085--50822167	37	2.2	37	82	0	103	45	16	18	19	1.85
50822023--50822188	62	2.7	61	88	1	224	48	15	17	18	1.82
50822308--50822359	27	2.0	26	88	3	77	36	21	25	17	1.94
50822605--50822878	27	10.2	27	81	5	261	25	18	19	36	1.95
50822631--50822878	81	3.1	80	83	6	295	25	17	19	36	1.94
50822604--50822878	134	2.1	134	82	4	331	25	18	19	36	1.95
50822605--50822878	54	5.1	54	83	4	288	25	18	19	36	1.95
50822900--50823066	27	6.2	27	72	8	110	32	9	17	40	1.82
50822899--50823073	54	3.3	54	78	4	183	32	9	18	39	1.83
50829925--50830050	46	2.7	46	91	2	191	23	22	24	30	1.99
50835141--50835208	25	2.7	25	69	13	59	30	19	19	30	1.96
50835146--50835254	50	2.2	49	81	1	119	30	21	22	26	1.98
50835186--50835254	25	2.8	25	76	10	79	31	21	24	21	1.98
50836488--50836535	25	1.9	25	83	8	62	31	0	20	47	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50840210--50840421	27	7.9	27	76	6	110	21	14	19	44	1.86
50840209--50840424	54	4.0	54	78	8	181	21	13	20	43	1.86
50840206--50840422	79	2.7	80	84	4	276	21	14	20	43	1.87
50844244--50844411	53	3.2	52	81	6	194	35	15	21	27	1.94
50844255--50844441	27	7.0	27	83	1	189	35	17	21	25	1.95
50845181--50845240	27	2.3	26	85	2	75	20	21	21	36	1.95
50846734--50847457	361	2.0	361	98	0	1394	25	15	31	27	1.96
50869512--50869682	46	3.7	46	76	12	170	22	21	26	29	1.99
50869509--50869679	93	1.8	93	88	2	263	22	21	27	28	1.99
50873869--50873965	45	2.2	45	84	1	124	36	20	19	23	1.95
50873894--50873933	18	2.2	19	90	4	64	35	17	27	20	1.95
50873913--50874038	27	5.0	26	72	17	104	34	18	22	25	1.96
50873858--50874038	73	2.5	72	82	9	226	34	19	21	24	1.96
50873966--50874006	19	2.2	19	90	0	64	36	14	26	21	1.93
50873939--50874034	46	2.1	46	88	1	140	34	17	22	25	1.96
50873858--50874038	72	2.5	71	81	7	224	34	19	21	24	1.96
50874676--50874726	26	2.0	25	84	3	66	17	27	17	37	1.93
50875769--50875982	52	4.1	53	80	8	213	22	16	18	42	1.89
50875764--50875984	27	8.3	27	83	6	213	23	16	18	42	1.89
50876403--50876495	7	12.9	7	72	22	59	46	2	1	50	1.20
50876438--50876494	27	2.1	27	90	0	87	49	0	0	50	1.00
50876441--50876496	7	8.4	7	78	11	64	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50877664--50877731	22	3.0	22	85	6	93	16	22	19	42	1.89
50892726--50892771	23	2.0	23	95	0	83	56	19	6	17	1.62
50894050--50894074	11	2.3	11	100	0	50	32	0	24	44	1.54
50894646--50894687	20	2.2	19	87	12	59	38	0	4	57	1.20
50895138--50895182	23	1.9	23	82	13	56	46	0	4	48	1.22
50896283--50896371	45	2.0	45	91	4	144	24	20	15	39	1.91
50905851--50905998	47	3.0	49	86	9	196	29	21	19	29	1.98
50905851--50905996	25	6.0	24	85	10	190	29	21	19	29	1.98
50906045--50906111	20	3.3	20	93	0	116	32	20	11	34	1.90
50906045--50906100	11	5.5	11	71	16	57	32	19	12	35	1.89
50909169--50909196	6	4.7	6	100	0	56	14	0	0	85	0.59
50920667--50920698	12	2.7	12	100	0	64	25	18	34	21	1.96
50930407--50930576	68	2.5	68	83	1	198	35	15	23	25	1.94
50937729--50937778	3	16.7	3	82	0	64	34	36	0	30	1.58
50939016--50939062	24	2.0	24	87	8	69	51	0	0	48	1.00
50939314--50939367	26	2.0	27	82	10	67	42	3	18	35	1.68
50939540--50939605	30	2.2	30	82	12	84	42	0	1	56	1.08
50944342--50944431	44	2.0	44	82	4	110	44	4	12	38	1.62
50945016--50945076	20	3.2	19	73	13	54	49	0	3	47	1.18
50945335--50945410	37	2.1	37	89	0	116	32	9	15	42	1.79
50954308--50954341	17	1.9	18	88	5	52	50	5	5	38	1.51
50954869--50954910	20	2.0	21	82	13	52	30	4	14	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50961733--50961774	21	2.0	21	95	0	75	30	7	28	33	1.84
50964561--50964634	31	2.4	31	86	4	105	18	27	35	18	1.95
50972687--50972728	13	3.0	14	76	13	50	16	9	42	30	1.80
50973993--50974031	20	2.0	20	100	0	78	35	12	20	30	1.90
50974083--50974200	23	5.1	23	95	0	209	27	20	20	32	1.97
50974415--50974478	31	2.1	31	90	0	101	37	15	21	25	1.93
50982010--50982096	20	4.3	20	94	0	147	35	11	19	33	1.88
50982021--50982096	11	7.5	11	71	16	74	35	11	19	32	1.88
50982032--50982088	9	5.9	9	75	15	51	35	8	21	35	1.84
50982145--50982221	24	3.2	24	92	3	129	31	19	19	29	1.96
50982147--50982219	23	3.1	23	92	3	119	30	20	19	30	1.97
50982434--50982497	31	2.1	31	93	0	110	37	15	23	23	1.93
50984369--50984393	5	5.0	5	100	0	50	20	0	0	80	0.72
50990073--50990100	2	14.0	2	100	0	56	0	0	50	50	1.00
50990916--50991042	21	6.0	21	88	0	146	34	15	29	20	1.94
50995906--50996022	62	1.9	62	83	0	153	26	28	20	24	1.99
50999180--50999225	20	2.3	20	82	14	60	28	28	17	26	1.98
50999192--50999235	19	2.2	20	84	4	54	34	25	18	22	1.96
51003988--51004056	31	2.2	32	97	2	131	33	31	11	23	1.90
51005421--51005458	20	1.9	20	94	0	67	26	5	13	55	1.59
51008793--51009059	126	2.1	125	82	5	324	40	19	13	27	1.89
51009159--51009212	23	2.5	23	82	8	60	61	5	0	33	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51009389--51009455	21	3.0	23	76	21	72	65	0	4	29	1.12
51009383--51009455	29	2.5	31	71	13	73	67	0	5	27	1.13
51009422--51009467	15	2.9	15	90	6	65	67	0	6	26	1.15
51009437--51009538	14	7.2	13	72	25	59	64	1	7	25	1.31
51009432--51009553	29	4.2	30	69	16	76	63	2	7	26	1.33
51010075--51010101	5	5.4	5	100	0	54	81	0	0	18	0.69
51010534--51010889	88	4.1	87	80	7	368	21	22	20	35	1.96
51010880--51011380	45	11.2	45	70	9	283	29	23	18	28	1.97
51010880--51011448	179	3.2	179	91	0	895	30	22	18	28	1.97
51011283--51011624	133	2.6	133	79	8	390	29	21	19	30	1.97
51011417--51012167	178	4.2	177	89	1	1088	28	21	18	31	1.97
51011550--51011646	45	2.2	45	85	7	126	29	20	15	34	1.94
51012036--51012301	134	2.0	134	90	1	426	30	22	19	27	1.98
51011423--51012337	356	2.6	353	83	5	943	29	21	18	30	1.97
51012084--51012428	179	1.9	179	86	3	498	31	22	19	27	1.98
51012217--51012360	45	3.2	45	82	3	182	30	25	18	26	1.98
51012132--51012472	89	3.8	89	71	12	245	29	22	19	28	1.98
51012397--51013141	178	4.2	178	88	1	1071	29	22	17	30	1.97
51012263--51012619	133	2.7	134	79	11	415	29	22	17	29	1.97
51012708--51012804	45	2.2	44	83	7	115	28	21	16	32	1.95
51011103--51014208	980	3.2	979	93	0	5315	29	21	18	30	1.97
51013202--51013326	45	2.8	46	79	8	134	30	22	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51013016--51013273	132	1.9	133	88	0	392	30	22	19	28	1.98
51013242--51013339	45	2.2	45	83	3	117	28	22	17	31	1.96
51013241--51013582	133	2.6	133	80	11	392	29	21	19	29	1.97
51013508--51013604	45	2.2	45	85	7	126	29	20	15	34	1.94
51013686--51013782	45	2.2	43	87	10	133	27	20	17	34	1.95
51013978--51014393	223	1.9	220	84	4	541	29	21	19	29	1.98
51013375--51014162	178	4.4	178	88	1	1114	28	21	17	31	1.97
51014087--51014294	89	2.3	89	91	3	330	29	21	21	27	1.98
51018761--51018806	19	2.4	19	85	7	58	43	15	21	19	1.87
51020231--51020530	126	2.4	126	83	4	367	37	21	15	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259