genome.fa.s9.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  131  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42536773--42536878	34	3.0	33	79	16	92	58	0	3	36	1.23
42536608--42536882	9	29.0	9	68	19	134	58	3	3	34	1.31
42545982--42546137	42	3.7	42	86	4	215	30	25	14	30	1.94
42548169--42548391	40	5.6	40	85	3	236	26	27	21	24	1.99
42548323--42548400	40	1.9	41	82	10	97	26	28	21	23	1.99
42556060--42556282	40	5.6	40	85	3	236	26	27	21	24	1.99
42556214--42556291	40	1.9	41	82	10	97	26	28	21	23	1.99
42563952--42564120	40	4.3	40	90	2	234	26	28	21	24	1.99
42563952--42564173	40	5.6	39	84	4	223	26	27	21	24	1.99
42564105--42564182	40	1.9	41	82	10	97	26	28	21	23	1.99
42576456--42576536	40	2.0	40	95	0	144	22	14	38	24	1.92
42582698--42582865	40	4.3	40	90	3	234	26	28	20	24	1.99
42582698--42582917	39	5.6	39	85	5	230	25	28	20	25	1.99
42590583--42590805	40	5.6	40	85	3	236	26	27	20	25	1.99
42602436--42602487	25	2.1	24	86	10	70	46	0	5	48	1.26
42602543--42602603	30	2.0	30	83	6	77	47	11	9	31	1.72
42605405--42605578	46	3.8	46	79	13	212	21	20	28	29	1.98
42605400--42605570	93	1.8	93	93	0	297	21	20	28	29	1.98
42614397--42614454	27	2.1	28	81	12	68	68	8	8	13	1.37
42625026--42625157	29	4.6	29	79	3	142	25	19	21	32	1.97
42625026--42625157	57	2.3	58	82	1	149	25	19	21	32	1.97
42625110--42625218	44	2.5	43	78	1	119	23	17	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42625154--42625224	29	2.4	29	80	0	79	26	16	22	33	1.96
42625079--42625229	73	2.1	73	88	1	223	25	17	21	35	1.95
42625177--42625221	15	3.1	15	75	18	58	17	13	28	40	1.88
42625375--42625464	37	2.4	37	83	0	108	36	24	22	16	1.94
42632262--42632460	51	3.9	51	91	1	328	30	25	12	32	1.92
42638683--42638926	51	4.8	51	89	2	375	28	25	14	31	1.95
42638683--42638924	101	2.4	102	90	3	373	28	25	14	30	1.95
42638966--42639011	24	1.9	24	95	0	83	19	21	19	39	1.93
42641010--42641061	20	2.6	20	96	0	95	11	30	32	25	1.91
42641137--42641161	13	1.9	13	100	0	50	4	40	24	32	1.73
42648406--42648460	20	2.8	21	81	13	64	43	9	16	30	1.79
42648511--42648672	26	6.3	26	90	3	251	28	20	23	27	1.99
42651828--42651891	24	2.6	24	85	2	83	31	23	10	34	1.89
42658963--42659026	24	2.6	24	87	2	92	32	23	9	34	1.87
42660248--42660284	19	1.9	19	88	0	56	32	2	5	59	1.34
42663362--42663488	67	1.9	67	90	0	200	30	27	22	19	1.98
42664554--42664629	9	8.9	9	72	16	54	39	11	6	42	1.68
42664554--42664629	34	2.2	34	83	0	89	39	11	6	42	1.68
42666602--42666864	47	5.6	46	79	12	243	27	20	29	23	1.99
42666602--42666864	140	1.9	141	82	8	340	27	20	29	23	1.99
42674209--42674480	46	5.8	44	77	10	183	29	19	29	21	1.98
42674209--42674429	46	4.7	46	80	7	214	28	19	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42674214--42674476	47	5.6	47	74	11	168	29	19	28	22	1.98
42674255--42674480	93	2.4	94	78	8	219	29	19	29	20	1.97
42674214--42674477	140	1.9	141	80	5	311	29	19	29	21	1.98
42675309--42675410	42	2.4	42	96	0	186	14	23	38	23	1.92
42678341--42678381	20	2.0	20	85	0	55	41	14	0	43	1.45
42680038--42680101	32	2.0	32	96	0	119	42	3	14	40	1.61
42686468--42686517	25	2.0	25	100	0	100	32	8	4	56	1.47
42686472--42686528	25	2.3	25	87	0	78	36	5	7	50	1.52
42692132--42692161	12	2.5	12	100	0	60	23	0	0	76	0.78
42692163--42692206	20	2.2	19	88	8	61	20	13	6	59	1.57
42692170--42692211	20	2.1	20	100	0	84	19	16	4	59	1.54
42696601--42696661	15	4.1	15	84	0	77	31	14	0	54	1.41
42710500--42710544	4	10.5	4	81	13	54	71	0	4	24	1.05
42710916--42710989	37	2.0	37	100	0	148	45	16	16	21	1.84
42711378--42711410	10	3.4	10	91	4	50	12	42	27	18	1.85
42712474--42712814	44	7.6	44	74	9	260	29	19	18	32	1.96
42720266--42720314	8	5.6	9	80	17	50	73	0	6	20	1.04
42720269--42720315	23	2.1	22	84	11	60	74	0	6	19	1.03
42724000--42724109	19	5.7	19	71	19	68	34	2	4	58	1.33
42723972--42724121	77	1.9	77	93	4	257	33	3	6	57	1.40
42726170--42726378	110	1.9	108	84	5	278	46	3	4	44	1.42
42726583--42726838	106	2.4	104	70	12	221	47	6	8	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42730608--42730648	17	2.4	17	87	0	55	2	9	14	73	1.19
42731242--42731390	45	3.3	45	81	5	167	28	22	16	33	1.95
42731224--42731354	44	3.0	44	76	6	138	31	20	15	32	1.94
42731224--42731390	89	1.9	89	84	0	226	28	21	15	34	1.94
42731222--42731416	89	2.2	89	79	0	219	28	20	16	34	1.95
42742419--42742480	20	3.2	20	73	11	65	32	24	1	41	1.64
42751682--42751716	15	2.3	15	90	0	52	25	40	8	25	1.84
42753170--42753217	20	2.3	20	89	3	78	54	10	10	25	1.66
42754000--42754050	19	2.7	18	79	11	57	37	1	5	54	1.36
42755661--42755787	59	2.1	60	81	7	143	45	14	3	36	1.63
42756107--42756221	61	1.9	61	83	0	149	38	7	14	39	1.76
42757844--42757888	22	2.0	22	87	8	65	28	2	4	64	1.25
42757849--42757903	27	2.0	28	86	13	78	30	1	5	61	1.29
42759760--42759885	27	4.7	26	81	6	135	27	17	26	27	1.98
42759759--42759885	54	2.3	54	82	11	152	28	17	26	27	1.98
42767358--42767483	27	4.7	26	81	6	135	27	17	26	27	1.98
42767357--42767483	54	2.3	54	82	11	152	28	17	26	27	1.98
42776436--42776469	17	2.1	17	88	5	52	58	0	0	41	0.98
42777963--42778020	24	2.3	26	77	11	68	53	3	3	39	1.35
42789679--42790344	221	3.0	221	96	0	1206	25	16	29	28	1.97
42793558--42793590	17	2.0	17	94	5	59	36	15	0	48	1.45
42793876--42794011	46	3.0	46	89	2	184	22	22	13	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42797557--42797611	22	2.4	23	81	6	67	69	3	0	27	1.05
42797819--42797887	28	2.5	27	75	13	68	26	2	5	65	1.29
42797882--42797929	19	2.6	19	80	3	62	39	2	2	56	1.23
42812786--42812823	6	6.3	6	96	0	67	31	0	65	2	1.06
42813175--42813219	23	2.0	23	82	8	56	51	2	2	44	1.26
42816570--42816720	43	3.5	42	77	8	137	29	24	19	26	1.99
42820416--42820631	49	4.5	49	73	10	187	25	28	20	25	1.99
42822597--42822799	75	2.7	75	80	1	228	38	19	17	24	1.93
42824325--42824510	48	3.9	48	84	0	246	27	19	24	29	1.98
42824325--42824510	96	1.9	96	87	0	273	27	19	24	29	1.98
42827046--42827134	32	2.8	32	75	13	83	29	6	24	39	1.81
42827277--42827345	26	2.6	27	79	6	79	30	11	24	33	1.91
42835715--42835739	12	2.1	12	100	0	50	52	16	0	32	1.44
42836423--42836454	7	4.6	7	96	0	55	46	15	21	15	1.83
42836901--42837078	88	2.0	88	90	4	279	26	12	14	46	1.80
42839293--42839317	5	5.0	5	100	0	50	60	0	0	40	0.97
42846718--42846762	21	2.1	21	87	0	63	44	6	6	42	1.57
42846757--42846797	22	1.9	22	90	5	66	26	14	7	51	1.69
42846909--42846941	17	1.9	17	93	0	57	42	12	3	42	1.57
42864386--42864608	40	5.6	40	84	3	227	26	27	21	25	1.99
42864540--42864617	40	1.9	41	82	10	97	26	28	21	23	1.99
42870459--42870713	138	1.8	138	88	1	386	26	22	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42870564--42871287	94	7.8	93	78	6	652	27	20	18	32	1.96
42870528--42870995	44	10.1	44	65	17	155	27	22	19	31	1.98
42871302--42871409	44	2.5	44	81	6	112	30	23	13	32	1.93
42871223--42871703	138	3.5	136	81	4	518	29	18	17	34	1.93
42871627--42871832	90	2.2	94	81	6	226	28	20	19	31	1.97
42885478--42885536	26	2.3	26	82	8	68	40	3	1	54	1.27
42885472--42885536	27	2.4	26	82	5	76	43	4	1	50	1.32
42889410--42889496	44	2.0	44	90	0	138	19	18	31	31	1.96
42893344--42893398	26	2.1	26	89	0	83	38	7	27	27	1.83
42895688--42895728	21	2.0	21	95	0	73	41	9	19	29	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259