genome.fa.s9.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  17  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4979660--4979731	30	2.4	30	92	2	126	26	15	23	34	1.94
4987010--4987081	30	2.4	30	92	2	126	26	15	23	34	1.94
4993615--4994948	477	2.8	477	96	0	2470	42	11	10	35	1.75
4999322--4999353	15	2.1	15	94	0	55	31	9	0	59	1.29
5000379--5000638	41	6.4	41	87	2	355	19	22	21	36	1.95
5000379--5000669	41	7.1	40	87	3	172	19	22	20	37	1.95
5003797--5004476	144	4.7	144	80	7	711	30	18	13	37	1.89
5007850--5007882	12	2.5	13	90	9	50	36	0	12	51	1.39
5009525--5009558	8	4.2	8	96	0	59	73	0	2	23	0.97
5010861--5010918	30	2.0	29	86	3	80	34	5	0	60	1.19
5011435--5011459	9	2.8	9	100	0	50	24	12	8	56	1.62
5012747--5012772	12	2.2	12	100	0	52	46	7	38	7	1.61
5015307--5015437	37	3.5	37	97	0	253	25	19	17	36	1.94
5015290--5015437	74	2.0	72	94	2	260	25	22	16	36	1.94
5015403--5015569	46	3.5	46	82	9	217	28	20	14	35	1.92
5015442--5015563	52	2.3	52	88	2	172	27	22	13	36	1.91
5018698--5018892	49	4.0	49	93	0	300	31	29	14	24	1.94
5020160--5020290	37	3.5	37	97	0	253	25	19	17	36	1.94
5020143--5020290	74	2.0	72	94	2	260	25	22	16	36	1.94
5020256--5020422	46	3.5	46	82	9	217	28	21	14	35	1.93
5020295--5020408	52	2.2	52	87	4	158	28	22	12	35	1.91
5030752--5031392	44	14.6	44	84	2	707	30	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5033157--5033192	18	2.0	18	89	10	56	27	0	5	66	1.13
5034872--5034911	19	2.0	22	85	14	59	32	47	2	17	1.61
5034973--5035135	27	6.0	28	83	9	180	36	22	22	18	1.95
5034977--5035135	54	2.9	54	88	1	230	36	22	22	18	1.95
5035251--5035321	26	2.6	28	86	4	92	35	8	21	35	1.84
5036761--5036870	26	4.2	26	96	2	186	37	24	3	34	1.73
5039847--5039878	16	2.0	16	93	0	55	25	3	12	59	1.48
5040742--5040781	19	2.0	22	85	14	59	32	47	2	17	1.61
5040845--5041008	27	6.1	26	86	4	202	35	21	25	17	1.95
5040845--5041008	54	3.0	54	91	1	258	35	21	25	17	1.95
5042630--5042739	26	4.2	26	96	2	186	37	24	3	34	1.73
5045193--5045263	28	2.5	29	88	4	101	56	1	2	39	1.23
5052089--5052156	3	22.7	3	94	5	120	66	0	1	32	1.01
5052401--5052447	23	2.0	23	100	0	94	40	12	12	34	1.82
5053987--5054053	31	2.1	32	83	5	82	16	22	7	53	1.67
5082423--5082470	15	3.4	15	75	13	57	16	0	8	75	1.04
5082423--5082490	27	2.5	28	83	9	79	14	2	7	75	1.14
5082498--5082537	18	2.2	19	86	4	55	7	17	0	75	1.03
5083771--5083964	92	2.1	92	81	1	246	25	23	19	31	1.98
5084343--5084428	25	3.4	25	81	0	109	26	15	18	39	1.90
5087262--5087286	11	2.3	11	100	0	50	60	0	0	40	0.97
5097686--5097737	15	3.4	15	77	15	61	69	0	3	26	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5097683--5097741	31	2.0	30	90	6	93	67	0	3	28	1.06
5104673--5104994	78	4.0	79	78	8	278	39	13	14	31	1.85
5104836--5105005	89	2.0	85	82	4	205	40	11	14	34	1.81
5105600--5106120	259	2.0	260	96	1	956	41	9	17	30	1.82
5106064--5106207	69	2.1	69	100	0	288	45	9	13	31	1.76
5106905--5106951	22	2.1	22	100	0	94	31	4	17	46	1.67
5108893--5108938	14	3.1	17	74	25	50	36	0	4	58	1.18
5113497--5113566	32	2.2	32	86	0	95	18	8	35	37	1.82
5116151--5116603	144	3.2	142	83	6	517	30	19	13	36	1.90
5116203--5116672	144	3.3	140	83	5	498	31	19	13	35	1.90
5123382--5123420	14	2.8	14	92	0	60	43	5	15	35	1.69
5132350--5132496	66	2.2	69	85	7	194	30	18	9	41	1.82
5132380--5132477	34	2.9	33	69	10	83	27	18	10	43	1.82
5134305--5134331	5	5.4	5	100	0	54	40	0	0	59	0.98
5136514--5136566	26	2.0	27	85	7	74	24	15	22	37	1.92
5138053--5138134	26	3.2	26	92	0	146	35	24	7	32	1.83
5139228--5139262	17	2.1	17	94	0	61	31	0	2	65	1.07
5139233--5139283	3	17.0	3	80	8	50	31	3	1	62	1.24
5139561--5139596	15	2.4	15	85	0	54	36	0	8	55	1.30
5139863--5139903	22	1.9	21	85	14	57	36	2	4	56	1.34
5151195--5151271	40	1.9	40	87	10	113	55	11	19	12	1.67
5152153--5152185	15	2.3	15	89	5	50	15	12	9	63	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5152326--5152356	13	2.4	13	100	0	62	12	16	6	64	1.47
5152086--5152604	86	6.0	85	78	10	495	26	16	19	38	1.92
5152094--5152565	173	2.7	172	81	9	516	26	16	19	37	1.93
5152086--5152603	260	2.0	255	81	9	611	26	16	19	38	1.92
5152718--5152816	44	2.2	44	87	0	135	29	18	22	30	1.97
5154271--5154305	17	2.1	17	94	0	61	31	0	2	65	1.07
5154276--5154326	3	17.0	3	80	8	50	31	3	1	62	1.24
5154609--5154655	15	3.1	15	84	0	67	38	0	6	55	1.26
5154909--5154954	20	2.3	21	77	11	60	34	4	6	54	1.46
5159388--5159485	19	5.2	19	87	7	146	38	9	16	35	1.80
5159388--5159494	36	2.8	37	83	9	135	37	10	15	36	1.82
5161444--5161490	24	2.0	24	95	0	85	38	8	10	42	1.70
5168113--5168373	126	2.1	126	88	2	389	27	16	16	38	1.91
5168113--5168431	126	2.5	126	83	5	342	27	15	18	38	1.91
5170217--5170324	26	4.2	26	89	0	162	34	6	22	37	1.80
5172694--5172980	143	2.0	143	98	0	556	21	21	24	32	1.98
5173196--5173241	19	2.4	19	89	7	67	21	21	10	45	1.82
5175429--5175467	16	2.4	16	83	8	53	82	2	15	0	0.79
5176485--5176521	18	2.1	18	100	0	74	21	10	10	56	1.64
5177192--5177316	64	2.0	64	90	3	198	29	15	16	39	1.89
5177492--5177676	45	4.2	45	68	9	119	24	16	28	30	1.96
5177383--5177822	132	3.3	132	87	1	634	26	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5177383--5177897	132	3.9	130	82	5	380	27	20	25	26	1.99
5178000--5178510	88	5.8	88	88	0	718	25	23	23	28	2.00
5178006--5178402	44	9.0	44	63	14	149	25	23	23	27	2.00
5178003--5178510	264	1.9	264	90	0	811	25	23	23	27	2.00
5178507--5178828	44	7.1	44	72	9	209	30	19	23	26	1.98
5178658--5178759	51	2.0	52	82	5	127	35	22	18	23	1.96
5180511--5180558	17	2.8	17	87	3	60	20	0	6	72	1.05
5181591--5181823	126	1.8	126	89	0	367	28	15	16	39	1.89
5181607--5181875	126	2.1	126	83	4	328	27	14	15	42	1.87
5181607--5181909	126	2.4	126	81	5	301	26	15	16	40	1.89
5190137--5190170	3	11.0	3	93	6	59	64	2	0	32	1.08
5191213--5191292	42	1.9	42	86	0	115	23	28	35	12	1.91
5191121--5191387	104	2.6	104	84	2	313	25	22	31	20	1.98
5192174--5192221	25	1.9	25	87	8	71	10	27	10	52	1.68
5195032--5195106	19	4.1	19	91	8	129	37	10	14	37	1.81
5194835--5195626	262	3.0	261	96	1	1462	39	17	14	27	1.89
5195294--5195368	19	4.1	19	91	8	129	37	10	14	37	1.81
5195557--5195612	18	3.5	15	81	18	60	37	10	16	35	1.83
5195555--5195633	35	2.2	37	86	13	121	37	10	16	35	1.82
5195555--5195626	19	3.9	19	89	10	123	37	11	15	36	1.83
5195555--5195649	17	4.8	22	84	12	79	36	9	15	37	1.80
5195618--5195663	21	2.1	22	84	8	58	36	4	15	43	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5195605--5195663	22	2.7	23	79	7	61	37	5	16	40	1.71
5195918--5195951	18	1.9	17	88	5	50	29	0	0	70	0.87
5198433--5198542	26	4.2	26	94	2	177	34	4	24	36	1.76
5200160--5200274	27	4.3	26	80	7	122	18	23	20	37	1.94
5203027--5203058	14	2.3	14	94	0	55	31	46	18	3	1.65
5208151--5208182	14	2.3	14	94	0	55	31	46	18	3	1.65
5223526--5223697	86	2.0	86	87	6	251	48	5	22	23	1.71
5224076--5224156	29	2.8	29	75	5	74	35	2	1	60	1.18
5224408--5224715	163	1.9	164	88	2	469	31	15	17	35	1.91
5225771--5225834	34	1.9	34	87	9	96	29	10	9	50	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259