genome.fa.s9.2.7.7.80.10.50.1000.224.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  224  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70775261--70775303	22	2.0	22	86	9	61	53	0	2	44	1.13
70777190--70777215	12	2.2	12	100	0	52	7	15	30	46	1.74
70777241--70777346	40	2.6	41	86	4	144	25	16	25	32	1.97
70777360--70777581	114	1.9	115	82	2	277	33	21	19	25	1.97
70778373--70778439	14	4.7	14	79	1	71	19	0	29	50	1.48
70778387--70778447	28	2.2	28	85	8	88	21	0	26	52	1.47
70778388--70778447	14	4.3	15	77	12	65	21	0	25	53	1.46
70778395--70778448	28	1.9	28	92	7	92	20	0	24	55	1.43
70778904--70778928	13	1.9	13	100	0	50	24	0	36	40	1.55
70778960--70779033	7	10.6	7	76	11	53	16	2	31	50	1.59
70779144--70779193	20	2.5	20	83	9	66	16	0	36	48	1.46
70779144--70779192	19	2.5	20	86	6	64	16	0	36	46	1.47
70783045--70783094	23	2.2	23	96	0	91	34	14	16	36	1.88
70783206--70783692	241	2.0	241	97	0	911	34	17	14	33	1.91
70783872--70784038	9	17.6	9	77	10	163	46	20	0	31	1.56
70783889--70784005	39	3.0	39	97	0	216	46	21	0	32	1.52
70783883--70784038	48	3.3	47	82	3	195	45	21	0	32	1.57
70783872--70784023	39	4.1	36	89	6	182	46	21	0	31	1.56
70789587--70789634	21	2.3	21	96	0	87	20	20	58	0	1.40
70789956--70790070	43	2.6	44	89	4	171	24	21	24	29	1.99
70790953--70791340	209	1.8	210	91	2	643	40	11	7	40	1.70
70791312--70791359	18	2.6	18	78	12	53	45	6	4	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70804573--70804640	30	2.3	30	84	5	84	47	5	19	27	1.72
70807065--70807338	46	6.0	46	93	0	433	37	15	24	21	1.93
70814107--70814140	5	6.8	5	89	0	50	64	0	32	2	1.08
70814107--70814140	15	2.3	15	94	0	59	64	0	32	2	1.08
70815438--70815476	19	2.1	19	85	4	53	38	0	7	53	1.30
70826654--70826811	21	7.5	21	73	5	104	46	17	19	16	1.84
70826635--70826823	42	4.5	42	74	3	159	46	16	20	16	1.84
70827022--70827060	7	5.6	7	93	0	60	43	30	0	25	1.55
70827025--70827068	21	2.1	21	86	0	61	43	34	0	22	1.54
70832778--70832817	8	4.2	10	81	18	50	77	0	0	22	0.77
70837432--70837483	18	2.9	18	94	0	86	23	7	30	38	1.83
70840686--70840821	58	2.4	57	80	6	161	41	12	5	40	1.67
70849767--70849802	13	2.8	14	84	16	51	27	25	0	47	1.52
70849754--70849794	18	2.2	19	87	12	59	29	24	0	46	1.53
70849899--70849956	23	2.5	23	97	0	107	46	41	3	8	1.51
70850458--70850504	15	3.1	15	81	0	67	48	12	2	36	1.53
70851787--70851818	13	2.5	13	100	0	64	15	6	0	78	0.95
70854835--70854954	62	1.9	62	82	0	150	29	15	19	35	1.93
70859117--70859190	30	2.5	30	88	0	94	43	8	16	32	1.77
70865667--70866409	180	4.1	181	87	2	993	29	22	16	31	1.96
70865650--70866409	361	2.1	357	86	2	1058	29	22	16	31	1.96
70866474--70866599	64	2.0	64	88	3	191	38	15	15	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70867529--70867686	54	2.9	54	78	14	157	15	20	16	47	1.83
70879861--70879889	12	2.5	12	94	5	51	82	10	0	6	0.83
70882529--70882595	26	2.6	27	83	9	95	14	19	23	41	1.89
70882664--70882711	24	2.0	23	88	4	69	16	27	20	35	1.94
70905046--70905093	24	2.0	23	88	4	69	16	27	20	35	1.94
70913394--70913418	10	2.5	10	100	0	50	12	28	0	60	1.32
70923408--70923571	39	4.2	39	93	0	267	21	21	29	27	1.99
70923408--70923606	39	5.1	39	89	1	240	22	21	28	27	1.99
70924271--70924358	44	2.0	44	100	0	176	20	15	20	43	1.88
70930115--70930349	39	6.0	39	85	4	280	21	21	28	28	1.99
70933930--70933978	19	2.6	19	96	0	89	63	10	8	18	1.50
70935530--70935628	29	3.5	28	70	16	78	38	11	5	45	1.62
70944982--70945039	22	2.6	21	78	10	62	53	0	3	43	1.17
70945313--70945351	20	2.0	20	85	9	55	23	2	2	71	1.10
70958242--70958352	55	2.0	55	92	0	186	44	13	11	30	1.80
70960518--70960562	19	2.2	20	84	7	56	53	24	0	22	1.46
70960872--70960937	31	2.2	31	83	2	89	43	7	1	46	1.41
70994460--70994559	51	2.0	51	95	0	182	31	12	22	35	1.90
70995207--70995345	58	2.4	59	77	12	146	27	13	12	46	1.79
71000954--71000987	17	2.0	17	94	0	59	44	50	0	5	1.26
71005593--71005626	17	2.0	17	94	0	59	44	50	0	5	1.26
71014339--71014614	3	92.7	3	69	14	162	30	6	3	59	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71014339--71014522	44	4.3	44	70	15	125	31	7	2	59	1.36
71016048--71016180	18	7.5	17	86	8	178	37	12	10	39	1.78
71016048--71016201	35	4.4	35	91	4	222	38	12	10	38	1.77
71016574--71016926	83	4.2	83	96	0	634	26	20	20	31	1.98
71016850--71017443	119	5.0	119	95	0	1035	29	18	18	33	1.95
71017435--71017614	44	4.1	44	76	8	177	27	24	16	31	1.97
71018495--71018542	14	3.6	13	83	10	62	2	14	0	83	0.74
71018494--71018540	21	2.2	21	88	7	69	2	14	0	82	0.75
71024861--71024976	18	6.5	18	88	4	164	37	12	10	39	1.78
71024861--71024985	35	3.5	36	84	9	166	37	13	9	39	1.78
71025174--71025223	23	2.2	23	85	7	66	32	8	0	60	1.26
71025165--71025223	20	2.9	21	80	10	68	33	11	0	54	1.37
71025270--71025448	3	59.7	3	70	8	98	28	5	4	61	1.38
71025520--71025553	17	2.0	17	88	0	50	32	8	2	55	1.45
71029505--71029588	26	3.2	26	96	0	150	36	25	4	33	1.77
71035984--71036016	4	8.0	4	93	6	57	51	0	0	48	1.00
71036003--71036035	17	1.9	17	93	0	57	39	9	0	51	1.34
71038662--71038702	21	2.1	20	82	13	50	43	0	7	48	1.30
71039820--71039880	29	2.1	29	93	0	104	45	14	14	24	1.83
71041964--71042060	21	4.2	23	72	13	74	41	0	1	57	1.05
71043436--71043485	17	2.7	20	78	18	70	10	0	44	46	1.37
71048075--71048124	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71051263--71051291	13	2.2	13	100	0	58	62	0	6	31	1.22
71056994--71057050	23	2.4	24	82	5	71	12	7	8	71	1.29
71057230--71057254	2	12.5	2	100	0	50	48	0	0	52	1.00
71057453--71057522	32	2.3	30	78	9	77	48	1	2	47	1.25
71062102--71062190	21	4.1	21	85	5	99	12	24	10	52	1.69
71062122--71062190	21	3.3	21	89	2	104	11	26	8	53	1.65
71067807--71067871	28	2.3	28	82	10	71	35	1	10	52	1.46
71072110--71072157	20	2.3	21	79	13	55	70	4	2	22	1.15
71072211--71072254	19	2.3	19	88	4	61	31	9	9	50	1.65
71072331--71072367	17	2.2	18	90	9	60	40	0	5	54	1.24
71075588--71075709	61	2.1	57	90	6	190	50	6	30	13	1.66
71076656--71076681	13	2.0	13	100	0	52	53	7	7	30	1.57
71078939--71078982	21	2.1	21	95	4	81	54	4	6	34	1.47
71078953--71078993	11	3.9	11	78	12	50	53	7	2	36	1.42
71079002--71079096	20	4.5	20	76	18	79	57	8	1	32	1.35
71078972--71079131	62	2.6	60	78	13	150	57	7	1	33	1.37
71079092--71079165	27	2.7	28	81	10	82	55	6	4	33	1.45
71079158--71079220	31	2.1	31	82	8	78	61	1	3	33	1.21
71079161--71079241	31	2.9	27	72	16	74	60	2	4	32	1.31
71079359--71079412	28	1.9	28	81	7	65	48	5	5	40	1.50
71081255--71081308	21	2.6	21	78	0	63	25	35	12	25	1.92
71081363--71081675	88	3.6	87	75	6	251	35	19	16	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71081367--71081993	167	3.8	165	77	11	448	33	19	17	28	1.95
71081609--71081904	76	3.8	77	87	1	396	31	20	18	29	1.96
71081829--71082015	91	2.1	89	87	2	266	37	18	16	26	1.92
71085547--71085605	31	1.9	31	100	0	118	28	23	15	32	1.95
71094283--71094326	21	2.1	21	95	4	81	54	4	6	34	1.47
71094387--71094419	14	2.3	15	94	5	59	63	3	0	33	1.10
71094438--71094527	27	3.2	27	81	10	94	54	5	5	34	1.47
71094570--71094628	3	19.7	3	73	13	50	61	3	5	30	1.34
71094691--71094733	21	2.2	18	88	12	59	53	9	2	34	1.46
71095076--71095146	19	3.8	19	74	18	62	64	1	2	30	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259