genome.fa.s9.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  149  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48734717--48734876	41	3.9	41	86	4	200	29	15	28	27	1.96
48738329--48738424	44	2.2	45	83	9	117	31	17	7	43	1.76
48745597--48745661	6	10.5	6	79	9	51	13	6	3	76	1.09
48745708--48745746	18	2.2	17	86	4	51	61	5	5	28	1.39
48748973--48749198	38	5.9	38	86	1	265	22	21	25	30	1.99
48754130--48754173	21	2.1	21	100	0	88	38	25	13	22	1.91
48757292--48757463	79	2.2	79	83	5	213	25	21	27	25	1.99
48757292--48757461	40	4.3	39	85	5	198	25	21	27	25	2.00
48759318--48759364	24	2.0	24	91	0	76	34	29	12	23	1.92
48759328--48759390	24	2.6	24	89	0	90	31	34	14	19	1.91
48767254--48767300	24	2.0	24	86	0	67	31	29	14	23	1.95
48767264--48767326	24	2.6	24	84	0	81	30	34	15	19	1.93
48775075--48775121	24	2.0	24	86	0	67	31	29	14	23	1.95
48775085--48775147	24	2.6	24	84	0	81	30	34	15	19	1.93
48779726--48779889	40	4.1	40	78	6	179	26	28	20	24	1.99
48791417--48791517	29	3.5	29	83	2	114	20	22	14	41	1.89
48795426--48795620	43	4.6	43	78	5	198	34	25	13	26	1.93
48795463--48795667	82	2.5	82	81	5	225	31	26	13	28	1.94
48796359--48796729	23	16.2	23	74	4	259	36	23	5	35	1.77
48796371--48796752	46	8.3	46	79	5	387	36	23	4	35	1.76
48796359--48796729	69	5.4	69	76	7	353	36	23	5	35	1.77
48800244--48800388	40	3.6	40	84	4	184	23	26	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48803143--48803366	47	4.8	47	75	11	183	25	28	17	29	1.98
48810655--48810781	63	2.0	63	95	0	227	33	27	9	29	1.88
48810831--48811101	47	5.8	48	82	6	283	23	28	18	29	1.98
48816902--48816943	21	2.0	21	100	0	84	19	19	33	28	1.96
48820908--48820992	43	2.0	43	82	13	104	28	30	17	23	1.97
48826729--48826960	56	4.1	56	98	0	428	46	8	22	22	1.78
48828093--48828317	40	5.7	40	83	5	260	26	22	26	25	2.00
48828146--48828350	80	2.6	79	85	4	245	27	20	26	25	1.99
48828093--48828350	119	2.2	119	79	6	274	27	21	25	25	1.99
48831739--48831784	24	1.9	24	86	0	65	32	28	13	26	1.93
48831822--48831868	20	2.3	20	96	0	85	34	10	21	34	1.88
48831919--48832037	23	5.1	23	94	2	202	28	21	20	29	1.98
48832250--48832310	31	2.0	31	90	0	95	36	13	22	27	1.92
48836967--48837345	47	8.1	47	90	0	544	34	11	28	26	1.90
48837319--48837437	46	2.6	46	94	0	211	34	10	31	24	1.88
48846037--48846293	79	3.2	80	85	4	308	24	22	27	26	2.00
48846037--48846293	40	6.5	40	86	3	288	24	22	27	26	2.00
48846037--48846293	119	2.2	119	83	5	306	24	22	27	26	2.00
48854328--48854486	80	2.0	80	83	4	205	22	22	28	26	1.99
48854327--48854469	40	3.6	40	90	1	207	20	23	28	26	1.99
48864596--48864658	25	2.5	24	82	12	74	31	6	3	58	1.39
48884842--48885012	93	1.8	93	94	0	306	28	28	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48884834--48885009	46	3.8	46	78	10	205	29	27	21	21	1.98
48891160--48891260	29	3.5	29	90	1	150	29	28	14	26	1.95
48897810--48897953	42	3.4	42	79	6	148	24	18	25	31	1.98
48897805--48897953	43	3.5	43	81	5	142	23	18	24	32	1.97
48899637--48899669	13	2.5	13	100	0	66	33	36	9	21	1.85
48900746--48900876	38	3.2	38	73	17	136	31	24	15	29	1.95
48900796--48900972	48	3.7	48	87	0	257	29	22	16	31	1.95
48903558--48903612	15	3.8	14	76	9	56	60	16	14	9	1.59
48903570--48903616	15	3.1	15	78	0	58	59	14	12	12	1.61
48906512--48906588	38	2.0	38	82	5	93	31	23	15	29	1.95
48906562--48906736	48	3.7	48	84	3	212	30	21	16	31	1.95
48906562--48906736	94	1.9	93	85	1	242	30	21	16	31	1.95
48910943--48911075	67	2.0	67	89	0	203	22	18	30	27	1.97
48911198--48911237	20	1.9	22	90	10	66	57	10	10	22	1.61
48912043--48912068	4	6.5	4	100	0	52	76	0	23	0	0.78
48912310--48912368	25	2.4	25	82	5	75	27	27	10	35	1.89
48919067--48919121	28	2.0	28	81	0	65	29	27	25	18	1.98
48919282--48919368	27	3.2	27	85	0	111	36	21	21	19	1.95
48919509--48919562	27	2.0	27	85	7	74	24	25	22	27	2.00
48919626--48919838	27	7.9	27	77	10	150	31	11	16	40	1.84
48919626--48919825	54	3.7	54	82	5	215	32	11	17	39	1.85
48919578--48919838	27	9.7	27	73	10	115	30	11	17	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48921698--48921817	60	2.0	60	90	3	188	30	17	25	25	1.97
48921930--48922060	67	2.0	67	87	3	192	25	17	29	26	1.97
48923203--48923368	46	3.6	46	74	11	133	26	21	27	24	1.99
48929394--48929618	79	2.8	78	81	7	247	26	25	22	25	2.00
48929394--48929618	119	1.9	120	81	8	280	26	25	22	25	2.00
48929394--48929618	40	5.7	39	80	8	217	26	25	22	25	2.00
48939248--48939341	34	2.8	34	73	15	86	24	21	25	28	1.99
48944210--48944432	40	5.6	40	89	3	317	22	22	27	27	1.99
48944213--48944465	40	6.4	39	82	8	203	24	22	26	26	2.00
48947211--48947267	30	1.9	30	85	7	80	43	12	10	33	1.76
48962607--48962650	22	2.0	22	86	0	61	52	4	0	43	1.22
48962892--48962962	33	2.2	32	84	2	88	16	38	23	21	1.93
48967808--48967916	37	2.9	37	94	0	182	26	30	19	23	1.98
48968062--48968246	48	3.8	48	91	4	300	30	27	7	35	1.83
48968062--48968245	98	1.9	97	92	4	309	30	27	7	35	1.83
48968309--48968427	22	5.1	22	63	25	66	24	28	14	32	1.94
48968216--48968435	47	4.7	47	90	0	341	25	28	12	33	1.93
48977018--48977047	12	2.5	12	88	0	51	40	50	6	3	1.45
48979443--48979480	17	2.0	20	85	14	55	50	5	13	31	1.63
48986803--48986853	26	2.0	26	96	0	93	17	21	25	35	1.95
48990525--48990555	13	2.4	13	100	0	62	12	0	35	51	1.40
49012148--49012372	40	5.6	40	83	2	281	22	26	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49012112--49012372	80	3.3	80	82	3	294	22	26	24	26	2.00
49023818--49024215	27	14.8	27	82	0	422	28	14	15	41	1.86
49028989--49029109	27	4.5	27	87	4	181	26	17	10	45	1.81
49029097--49029290	27	7.2	27	77	8	164	40	22	8	28	1.83
49029016--49029144	54	2.4	54	78	0	141	31	17	9	41	1.82
49028996--49029145	81	1.9	81	83	5	196	31	16	10	42	1.81
49029111--49029262	80	1.9	80	88	0	232	42	21	7	27	1.80
49029301--49029352	27	1.9	27	88	7	79	38	13	13	34	1.84
49029406--49029492	27	3.2	27	86	3	113	34	17	26	21	1.95
49030296--49030445	26	5.8	26	87	0	212	28	22	23	26	1.99
49030656--49030732	31	2.5	31	89	0	109	33	16	20	28	1.95
49048319--49048468	27	5.6	27	77	3	131	29	26	16	27	1.97
49059211--49059321	25	4.3	26	84	7	156	43	21	6	28	1.77
49059460--49059513	24	2.2	25	87	6	85	35	16	31	16	1.92
49060255--49060396	49	2.9	48	89	3	221	23	24	23	28	2.00
49060255--49060396	24	5.8	24	88	1	203	23	24	23	28	2.00
49070754--49070813	6	10.0	6	76	7	59	75	1	1	21	0.99
49072701--49072840	55	2.5	55	74	0	136	12	25	32	30	1.92
49107521--49107691	46	3.7	46	76	12	170	22	21	26	29	1.99
49107518--49107688	93	1.8	93	88	2	263	22	21	27	28	1.99
49111866--49112002	27	5.4	27	71	18	78	36	19	20	23	1.95
49111904--49111943	18	2.2	19	90	4	64	35	17	27	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49111877--49111975	45	2.2	45	85	1	126	35	21	20	23	1.96
49111923--49112046	27	5.0	26	72	17	102	34	17	21	25	1.96
49111866--49112029	72	2.3	73	87	3	233	35	20	21	23	1.96
49111976--49112016	19	2.2	19	90	0	64	36	14	26	21	1.93
49111949--49112042	46	2.1	44	88	5	136	35	17	22	25	1.95
49112687--49112737	27	1.9	26	84	4	66	17	27	19	35	1.94
49113780--49113990	27	7.9	27	85	4	187	22	16	19	41	1.90
49113809--49114002	54	3.6	54	84	6	225	22	15	19	42	1.89
49113780--49114000	80	2.8	80	82	6	243	22	16	19	42	1.89
49114422--49114514	7	12.9	7	72	22	59	46	2	1	50	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259