genome.fa.s9.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  97  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31547032--31547086	14	3.9	14	73	2	56	76	1	14	7	1.08
31547036--31547106	30	2.3	31	90	7	110	76	2	11	9	1.13
31547914--31547992	20	4.2	20	73	16	78	70	0	22	6	1.09
31547923--31547973	15	3.5	14	81	7	66	78	0	17	3	0.90
31548007--31548063	28	2.0	30	83	10	75	59	3	21	15	1.51
31556071--31556167	30	3.2	30	77	2	106	28	15	26	28	1.96
31556402--31556490	21	4.1	21	84	5	90	53	10	23	12	1.68
31556402--31556470	21	3.3	21	87	2	95	55	8	24	11	1.64
31560028--31560077	18	2.8	18	84	0	64	14	30	0	56	1.39
31560003--31560084	24	3.4	24	77	0	92	12	28	0	59	1.33
31560081--31560177	42	2.3	42	91	1	151	14	23	5	56	1.58
31560088--31560155	21	3.2	21	65	8	57	11	22	7	58	1.57
31571229--31571325	30	3.2	30	75	2	106	28	26	15	28	1.96
31574420--31574474	15	3.8	14	80	7	65	74	1	21	1	1.01
31585902--31585961	23	2.7	21	74	20	59	73	0	21	5	1.02
31589124--31589301	27	6.6	27	83	3	205	26	15	28	29	1.96
31589099--31589301	54	3.7	55	81	6	216	26	14	28	30	1.95
31589099--31589301	82	2.5	81	80	4	237	26	14	28	30	1.95
31595300--31595341	15	2.6	16	85	7	59	88	2	9	0	0.61
31595300--31595339	20	2.0	21	90	5	64	87	2	10	0	0.63
31596368--31596473	48	2.2	47	85	9	135	59	1	24	14	1.45
31609776--31609804	1	29.0	1	100	0	58	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31617261--31617392	40	3.3	40	84	7	171	27	28	20	24	1.99
31619308--31619436	46	2.8	46	91	0	204	30	28	20	20	1.98
31619316--31619455	46	3.0	45	85	4	122	29	28	20	21	1.98
31626784--31626911	46	2.8	47	91	3	206	29	29	21	19	1.97
31629576--31629779	40	5.1	40	88	3	286	27	26	22	24	1.99
31629530--31629779	80	3.2	80	86	2	326	26	26	22	24	2.00
31635330--31635911	47	12.4	47	92	0	885	33	8	30	28	1.86
31635501--31635626	25	5.3	25	63	18	79	31	6	30	30	1.83
31637764--31638035	40	6.8	40	92	0	456	20	22	31	26	1.98
31641971--31642646	47	14.4	47	93	0	1001	33	7	29	28	1.86
31645996--31646025	8	3.8	8	90	0	51	50	23	23	3	1.64
31646438--31646524	27	3.3	26	85	7	113	18	22	22	35	1.95
31651120--31651155	17	2.1	18	89	5	56	69	0	16	13	1.19
31656048--31656179	47	2.8	47	78	6	133	28	16	24	30	1.97
31659419--31659462	23	1.9	23	86	9	63	34	6	13	45	1.70
31665308--31665333	10	2.6	10	100	0	52	65	0	0	34	0.93
31665284--31665377	46	2.0	50	83	10	126	59	4	4	31	1.36
31666200--31666252	22	2.3	23	87	9	74	37	22	7	32	1.82
31668094--31668154	26	2.4	26	83	8	81	50	3	8	37	1.48
31668105--31668162	16	3.4	17	78	9	64	46	3	6	43	1.47
31668915--31668968	14	3.9	14	80	0	63	48	29	0	22	1.51
31669111--31669250	7	19.7	7	71	8	59	40	32	2	24	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31669112--31669216	14	7.4	14	72	5	77	40	33	0	24	1.62
31671279--31671456	46	3.8	46	79	4	214	28	28	20	21	1.98
31671287--31671457	93	1.8	93	92	0	288	28	29	21	21	1.98
31673855--31673917	15	4.2	15	82	8	83	60	14	12	12	1.60
31676869--31677039	93	1.8	93	93	0	297	28	28	21	21	1.99
31676861--31677036	46	3.8	46	77	15	200	29	27	21	21	1.98
31680038--31680072	16	2.2	16	89	0	52	54	0	0	45	0.99
31680508--31680594	43	2.0	43	93	0	147	47	9	3	40	1.52
31681090--31681155	34	1.9	34	93	0	114	39	4	6	50	1.48
31682891--31682949	29	2.0	29	100	0	118	27	6	20	45	1.76
31685052--31685089	14	2.7	14	91	0	58	50	2	7	39	1.46
31693798--31693849	20	2.6	21	81	9	72	25	30	30	13	1.94
31700560--31700638	29	2.7	29	98	0	149	36	15	24	24	1.93
31703590--31703625	10	3.6	10	92	7	56	25	36	30	8	1.85
31703814--31703930	49	2.4	49	94	0	198	29	23	21	25	1.99
31704523--31704593	27	2.6	27	86	0	97	23	26	15	33	1.95
31704652--31704915	27	9.7	27	76	7	113	29	8	19	42	1.81
31704736--31704967	54	4.3	53	74	4	178	28	9	20	40	1.85
31704709--31704940	81	2.9	81	75	8	231	28	8	20	41	1.82
31704709--31704959	27	9.3	26	77	6	146	28	9	20	41	1.84
31704923--31705029	27	4.0	27	83	0	133	28	15	17	37	1.91
31717385--31717434	22	2.3	22	78	0	55	34	20	24	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31719147--31719351	64	3.2	65	77	10	197	23	27	16	32	1.96
31719206--31719391	64	2.8	64	79	6	151	24	27	17	30	1.97
31726682--31727306	40	15.6	40	92	0	1027	24	27	19	28	1.99
31743009--31743141	1	133.0	1	96	0	248	0	1	0	98	0.11
31744410--31744581	45	3.8	45	76	15	192	29	30	19	20	1.97
31744417--31744585	92	1.8	91	94	1	302	28	30	20	21	1.98
31751969--31752140	93	1.8	93	93	2	301	29	28	20	20	1.98
31751962--31752137	46	3.8	46	78	14	200	30	28	20	20	1.98
31766012--31766685	47	14.4	47	90	0	1003	32	10	31	25	1.90
31766522--31766596	23	3.2	23	65	29	59	34	6	29	29	1.83
31766026--31766685	188	3.5	188	97	0	1198	32	11	31	25	1.91
31766816--31766895	37	2.2	37	86	4	108	23	17	31	27	1.97
31775797--31775841	18	2.4	19	81	7	56	46	6	4	42	1.50
31775965--31776003	12	2.9	14	77	14	55	23	7	0	69	1.14
31789701--31789743	20	2.2	20	87	8	61	16	4	0	79	0.90
31791532--31791600	30	2.3	31	82	7	79	44	5	18	30	1.73
31791832--31791879	24	2.0	25	91	4	80	41	0	0	58	0.98
31793153--31793223	24	3.0	24	95	0	124	35	1	38	25	1.65
31793153--31793246	48	1.9	48	81	10	111	35	4	37	23	1.75
31794638--31794750	27	4.2	26	84	8	136	16	23	23	37	1.94
31794638--31794750	55	2.1	54	86	5	156	16	23	23	37	1.94
31797435--31797636	94	2.1	95	88	0	298	28	19	29	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31797435--31797651	47	4.6	47	74	16	164	27	18	29	23	1.98
31803671--31803877	28	7.4	28	94	1	326	25	11	28	34	1.91
31812909--31812949	20	2.0	20	100	0	82	56	0	14	29	1.39
31813115--31813249	66	2.0	70	85	7	188	38	8	8	43	1.67
31813010--31813387	204	1.9	204	91	4	620	40	8	6	44	1.60
31813186--31813431	138	1.8	136	85	5	356	41	8	6	44	1.60
31814126--31814182	27	2.1	27	100	0	114	50	22	3	22	1.64
31817652--31817691	20	2.0	20	100	0	80	30	25	25	20	1.99
31825670--31825844	46	3.8	45	78	7	190	28	30	20	20	1.98
31825677--31825849	93	1.9	93	93	0	301	27	30	20	20	1.98
31833759--31833843	44	1.9	44	90	4	136	42	12	11	32	1.80
31842459--31842497	18	2.1	19	85	4	53	7	23	2	66	1.30
31842491--31842557	30	2.2	30	83	0	80	11	23	0	64	1.27
31842515--31842566	18	2.9	18	82	0	59	13	19	1	65	1.36
31842533--31842557	12	2.1	12	100	0	50	8	16	0	76	1.02
31845391--31845420	10	3.0	10	100	0	60	10	20	30	40	1.85
31845443--31845474	11	2.9	11	100	0	64	18	9	37	34	1.83
31848655--31848690	18	2.0	18	94	0	63	58	5	0	36	1.22
31849676--31849731	15	3.7	15	75	15	62	62	5	0	32	1.18
31853723--31853762	16	2.5	16	95	0	71	40	0	20	40	1.52
31860945--31860984	14	2.9	14	88	0	53	50	7	32	10	1.64
31866732--31866903	93	1.8	93	94	0	308	29	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31866725--31866900	46	3.8	46	78	12	207	30	28	19	21	1.98
31870297--31870490	54	3.6	54	77	7	205	36	15	24	22	1.94
31870305--31870491	55	3.5	53	78	13	186	35	16	25	22	1.95
31874323--31874995	48	14.1	48	94	1	1149	36	5	27	30	1.81
31875142--31875250	37	2.9	37	95	0	191	22	19	31	26	1.98
31878525--31878613	44	2.0	44	95	0	160	41	7	14	35	1.75
31881232--31881434	54	3.8	54	79	7	223	36	17	24	20	1.94
31885302--31885443	53	2.6	54	82	2	169	37	19	23	19	1.94
31889695--31889724	15	2.1	14	93	6	51	50	6	10	33	1.62
31889514--31889844	164	2.0	162	82	5	391	38	21	9	30	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259