genome.fa.s9.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  218  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69148752--69148926	6	28.8	6	72	17	139	48	13	17	21	1.81
69148752--69148926	30	6.7	24	77	16	170	48	13	17	21	1.81
69148752--69148926	79	2.2	79	95	0	314	48	13	17	21	1.81
69149044--69149130	27	3.3	26	87	4	93	36	24	21	17	1.94
69149330--69149551	27	8.2	27	87	0	255	27	19	17	35	1.95
69149556--69150171	27	22.8	27	83	3	625	41	9	21	27	1.84
69152128--69152326	6	32.8	6	77	15	196	48	14	17	19	1.81
69152128--69152289	30	5.6	30	84	12	230	49	14	16	19	1.80
69152128--69152289	85	1.9	85	97	0	306	49	14	16	19	1.80
69152444--69152529	27	3.2	26	83	4	100	37	22	22	18	1.94
69152729--69152924	27	7.3	27	85	2	214	25	19	19	35	1.96
69152929--69153598	27	24.8	27	86	2	765	41	10	21	27	1.85
69157725--69157819	40	2.4	40	96	0	172	35	18	20	25	1.95
69165030--69165177	75	2.0	75	83	2	190	30	22	22	25	1.99
69173115--69173148	6	5.7	6	85	0	50	17	38	0	44	1.49
69173116--69173148	12	2.8	12	100	0	66	18	39	0	42	1.50
69181011--69181225	106	2.0	106	98	0	412	41	20	13	24	1.88
69186254--69186304	24	2.1	24	92	0	84	31	15	7	45	1.75
69206024--69206074	21	2.4	21	93	0	84	31	37	7	23	1.83
69217114--69217177	15	4.0	15	79	20	60	70	1	0	28	0.97
69217114--69217177	17	3.9	16	84	13	78	70	1	0	28	0.97
69217114--69217176	33	1.9	32	84	12	83	69	1	0	28	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69217188--69217261	27	2.9	26	78	9	64	70	0	1	28	0.96
69217199--69217261	5	12.2	5	80	15	67	74	0	0	25	0.82
69218068--69218105	20	2.0	20	89	5	60	23	15	13	47	1.81
69220450--69220494	22	2.0	22	86	0	63	68	4	6	20	1.29
69223426--69223610	40	4.7	40	82	6	216	24	22	28	25	1.99
69223479--69223643	79	2.1	79	82	6	192	26	20	27	25	1.99
69223835--69224145	47	6.6	47	90	1	487	32	8	29	29	1.87
69224264--69224342	37	2.1	37	88	0	113	25	18	30	25	1.98
69225558--69225829	40	6.8	40	89	0	409	24	22	27	25	1.99
69229850--69230034	79	2.3	81	82	7	227	24	22	28	24	2.00
69229850--69230034	40	4.7	40	83	6	225	24	22	28	24	2.00
69229903--69230067	79	2.1	79	83	6	201	26	21	27	24	1.99
69230259--69230522	47	5.6	47	92	1	429	32	8	30	29	1.87
69230641--69230719	37	2.1	37	90	0	122	24	18	31	25	1.98
69253856--69253900	21	2.2	20	84	11	56	31	11	15	42	1.82
69256103--69256164	18	3.5	18	68	12	56	53	0	8	38	1.31
69256194--69256326	69	2.0	64	88	8	196	55	9	7	27	1.59
69259506--69259538	10	3.5	10	88	12	52	48	0	0	51	1.00
69261011--69261053	15	2.9	15	82	3	52	44	0	2	53	1.13
69263089--69263126	15	2.4	16	82	4	51	28	2	0	68	1.03
69268487--69268599	43	2.6	43	85	1	163	25	18	28	27	1.98
69269457--69269485	13	2.1	14	93	6	51	62	3	0	34	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69274625--69274743	9	12.6	9	73	10	94	31	1	21	46	1.61
69274658--69274732	39	1.9	39	97	0	141	33	0	21	45	1.52
69274627--69274737	57	1.9	57	85	0	150	30	1	21	45	1.62
69279483--69279519	13	2.7	14	91	8	67	51	5	0	43	1.24
69279769--69279814	22	2.1	22	84	8	58	47	32	0	19	1.50
69280159--69280190	16	2.0	16	93	0	55	37	40	0	21	1.54
69280860--69280913	27	2.0	27	82	7	65	18	20	24	37	1.94
69280918--69280948	12	2.6	12	94	0	53	45	29	16	9	1.79
69281357--69281615	46	5.6	46	89	0	358	41	15	23	20	1.90
69281901--69281933	17	2.0	17	88	5	50	51	0	12	36	1.39
69303390--69303432	17	2.5	18	85	11	63	74	0	25	0	0.82
69303383--69303432	21	2.4	22	83	12	61	72	0	28	0	0.86
69303526--69303580	26	2.1	26	96	0	101	40	5	7	47	1.54
69303531--69303588	26	2.2	26	90	0	89	37	5	12	44	1.64
69303552--69303634	39	2.2	37	83	10	98	34	4	13	46	1.64
69305313--69305348	18	2.0	18	100	0	72	38	22	0	38	1.54
69307361--69307408	18	2.8	17	87	6	69	35	2	12	50	1.52
69311675--69312096	136	3.1	133	82	7	478	29	5	8	56	1.51
69313013--69313135	38	3.2	38	88	0	183	31	26	21	21	1.98
69315776--69316546	149	5.2	149	93	1	1265	28	7	8	56	1.55
69316571--69316610	17	2.4	16	92	8	71	12	7	5	75	1.18
69317126--69317167	3	14.7	3	80	9	52	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69317123--69317168	14	3.2	14	87	3	65	0	41	0	58	0.98
69317132--69317167	17	2.1	17	89	0	54	0	36	0	63	0.94
69318966--69318999	17	2.0	17	88	0	50	41	2	0	55	1.15
69319977--69320007	11	2.8	11	95	0	53	19	48	3	29	1.64
69320717--69320747	11	2.8	11	95	0	53	29	3	48	19	1.64
69321003--69321033	11	2.8	11	95	0	53	19	48	3	29	1.64
69323918--69323981	28	2.3	27	79	10	67	62	1	0	35	1.05
69323934--69323972	14	2.9	14	84	3	53	58	0	0	41	0.98
69323918--69323972	14	4.1	14	74	4	51	61	1	0	36	1.06
69329116--69329142	11	2.5	11	100	0	54	62	7	0	29	1.22
69331264--69331323	29	2.1	28	84	12	77	61	13	11	13	1.57
69332312--69332449	42	3.3	42	77	0	132	23	20	20	36	1.95
69332393--69332493	42	2.4	41	80	9	98	25	21	16	35	1.95
69341102--69341128	13	2.1	13	100	0	54	22	0	7	70	1.12
69357045--69357074	6	5.0	6	91	0	51	13	0	3	83	0.77
69357045--69357083	18	2.2	18	85	0	51	15	2	2	79	0.95
69361607--69361682	31	2.5	31	85	4	93	59	2	0	38	1.12
69362447--69362890	208	2.1	208	97	0	836	27	24	27	20	1.99
69363304--69363358	28	2.0	27	89	3	83	34	34	0	30	1.58
69367062--69367107	14	3.4	14	82	14	53	23	2	0	73	0.94
69367062--69367107	9	5.2	9	82	17	53	23	2	0	73	0.94
69377201--69377358	43	3.7	42	69	10	122	23	18	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69378947--69378981	11	3.1	11	84	8	52	14	8	0	77	0.99
69381700--69381736	8	4.6	8	96	0	65	24	0	35	40	1.55
69382960--69383011	18	2.9	18	94	0	86	32	19	17	30	1.95
69394205--69394255	26	2.0	26	88	7	77	39	0	0	60	0.97
69394211--69394265	26	2.2	25	83	9	67	41	0	0	58	0.98
69394290--69394328	19	2.0	21	90	10	64	43	0	2	53	1.14
69397281--69397316	18	2.0	18	88	0	54	44	0	5	50	1.25
69397668--69397800	66	2.0	66	100	0	266	47	18	12	22	1.81
69399300--69399401	18	5.7	18	89	2	98	35	15	15	33	1.90
69399292--69399401	36	3.1	36	88	2	150	36	16	14	32	1.89
69400626--69400662	8	4.6	8	96	0	65	40	35	0	24	1.55
69400959--69401008	23	2.2	22	82	13	57	68	8	18	6	1.36
69401058--69401094	8	4.6	8	96	0	65	24	0	35	40	1.55
69402318--69402427	18	6.1	18	87	4	132	32	14	16	36	1.89
69402318--69402427	36	3.1	36	88	2	150	32	14	16	36	1.89
69403920--69404052	66	2.0	66	100	0	266	22	12	18	47	1.81
69404408--69404444	19	2.0	18	89	5	56	51	5	0	43	1.24
69407449--69407502	23	2.3	24	81	9	67	50	1	0	48	1.11
69407487--69407533	19	2.3	19	85	10	58	48	4	2	44	1.34
69407525--69407564	19	2.2	18	86	4	53	57	0	0	42	0.98
69407524--69407631	33	3.1	33	71	24	87	50	0	0	49	1.07
69407528--69407603	35	2.2	33	84	13	93	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69407522--69407617	35	2.8	34	73	18	92	51	0	0	48	1.00
69407641--69407680	18	2.3	17	87	8	62	62	0	0	37	0.95
69412853--69412894	5	8.4	5	79	10	50	23	0	0	76	0.79
69412848--69412900	15	3.4	16	77	20	58	26	0	0	73	0.83
69412848--69412894	20	2.3	20	85	7	60	23	0	0	76	0.78
69417538--69417642	46	2.3	46	98	0	201	37	13	24	24	1.92
69425612--69425650	14	2.9	14	85	14	55	30	0	0	69	0.89
69427136--69427182	16	3.0	16	79	14	53	31	6	2	59	1.34
69427420--69427495	32	2.4	30	81	12	82	31	6	5	56	1.47
69430709--69430833	66	1.9	67	88	5	191	33	8	7	51	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259