genome.fa.s9.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  94  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30761915--30761979	27	2.5	26	87	5	94	15	23	21	40	1.91
30762097--30762200	6	16.8	6	72	16	79	20	20	12	47	1.82
30762100--30762188	25	3.6	25	92	0	142	20	21	13	44	1.85
30766505--30766679	46	3.8	45	78	7	163	30	28	18	22	1.98
30770548--30770715	83	2.0	84	90	1	266	27	13	23	34	1.93
30774491--30774659	84	2.0	83	94	1	293	27	15	23	33	1.95
30778175--30778221	15	3.2	14	82	8	58	61	4	23	10	1.46
30789536--30789729	27	7.2	27	83	0	226	35	19	20	25	1.96
30790225--30790275	27	1.9	26	84	4	66	19	27	17	35	1.94
30795853--30795892	21	1.9	21	94	0	71	50	15	7	27	1.70
30795993--30796116	62	2.0	62	98	0	239	42	13	12	30	1.82
30797564--30797594	16	1.9	16	93	0	53	61	16	0	22	1.34
30799378--30799444	26	2.4	29	79	18	72	26	7	13	52	1.67
30817084--30817261	27	6.6	27	84	3	205	29	28	15	26	1.96
30817105--30817260	82	1.9	81	88	3	233	29	28	15	26	1.96
30823218--30823599	194	2.0	192	94	1	674	31	16	14	37	1.89
30828817--30828894	31	2.5	31	89	0	120	26	28	15	29	1.96
30828918--30829009	42	2.2	42	92	0	148	34	21	14	29	1.93
30829154--30829277	26	4.8	26	90	1	196	25	21	25	28	1.99
30830083--30830169	27	3.2	27	90	3	122	19	26	19	34	1.96
30830227--30830331	28	3.8	29	77	15	105	29	7	19	43	1.78
30830312--30830545	80	2.9	80	85	3	301	29	8	21	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30830200--30830681	27	17.8	27	78	5	242	33	8	20	37	1.83
30830525--30830705	81	2.2	80	80	3	209	38	7	19	34	1.81
30836933--30837062	71	1.9	70	82	7	167	33	16	30	20	1.95
30848499--30848560	17	3.5	17	80	6	70	12	17	1	67	1.30
30848501--30848584	17	4.4	19	77	15	68	13	19	1	66	1.31
30848530--30848598	21	3.5	20	77	16	63	11	20	0	68	1.20
30849494--30849529	18	1.9	18	88	5	54	33	8	0	58	1.28
30852717--30852788	33	2.2	33	84	0	99	25	20	25	29	1.99
30853848--30853891	20	2.1	21	83	4	54	50	20	4	25	1.67
30855707--30855762	27	2.1	27	93	0	94	28	8	30	32	1.88
30856258--30856321	27	2.4	27	89	0	101	34	18	20	26	1.96
30863363--30863646	141	2.0	142	97	1	543	29	10	19	41	1.84
30864192--30864468	48	5.8	48	74	11	237	26	20	25	26	1.99
30866612--30866681	26	2.7	26	90	2	113	41	2	7	48	1.45
30869559--30869609	24	2.1	24	96	0	93	72	7	9	9	1.28
30870465--30870511	24	2.0	24	95	0	85	25	14	34	25	1.94
30870489--30870712	43	5.3	43	78	4	258	25	17	26	30	1.97
30870489--30870737	84	3.0	84	92	0	408	25	16	25	32	1.96
30870489--30870740	43	6.0	41	78	4	252	25	16	26	32	1.96
30874462--30874779	46	6.7	48	76	12	223	23	28	19	28	1.98
30874465--30874736	46	5.7	47	76	10	245	22	29	19	27	1.98
30874465--30874733	138	1.9	145	84	6	374	23	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30874463--30874781	94	3.4	97	79	10	324	23	28	19	28	1.98
30898520--30898564	20	2.2	20	88	0	63	22	31	17	28	1.97
30902152--30902238	30	2.9	30	75	3	95	27	16	27	28	1.97
30904318--30904399	30	2.7	30	81	9	87	10	21	2	64	1.37
30904350--30904405	18	3.1	18	76	5	51	7	19	3	69	1.27
30904375--30904399	12	2.1	12	100	0	50	8	16	0	76	1.02
30904470--30904530	16	3.9	15	75	14	61	8	14	0	77	0.99
30904468--30904513	15	3.1	14	84	12	56	6	17	0	76	1.00
30904468--30904537	31	2.3	31	85	9	90	8	17	0	74	1.06
30904485--30904536	9	5.1	10	76	19	54	9	15	0	75	1.05
30904486--30904535	21	2.4	20	83	12	57	6	16	0	78	0.95
30905456--30905503	11	3.8	12	81	13	53	16	4	8	70	1.27
30905468--30905501	12	2.8	12	100	0	68	17	0	5	76	0.98
30908474--30908506	11	3.1	11	86	8	50	51	18	0	30	1.46
30908857--30908886	15	1.9	16	93	6	53	60	3	0	36	1.14
30909602--30909650	24	2.0	24	100	0	98	32	24	14	28	1.94
30910517--30910550	15	2.3	15	89	0	50	11	17	0	70	1.16
30911432--30911485	22	2.4	22	81	3	63	12	14	3	68	1.34
30911540--30911574	17	2.1	17	88	0	52	8	2	0	88	0.61
30912271--30912320	21	2.2	21	82	10	55	46	18	12	24	1.82
30917748--30917792	20	2.2	20	88	0	63	22	31	17	28	1.97
30920206--30920340	56	2.4	56	91	2	209	28	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30920209--30920369	56	2.9	56	85	9	190	27	19	23	29	1.98
30925522--30925602	39	2.1	39	92	0	135	48	14	8	28	1.74
30926134--30926204	36	2.1	34	82	12	83	8	21	1	69	1.23
30926710--30926833	63	2.0	63	81	9	146	32	25	16	25	1.96
30927407--30927465	29	2.0	29	87	6	84	28	15	32	23	1.95
30930773--30930844	34	2.1	35	84	7	94	41	11	26	20	1.86
30934732--30934824	25	3.7	25	87	7	75	27	24	22	24	2.00
30934750--30934826	25	3.0	26	92	3	122	24	24	22	28	1.99
30934756--30934839	25	3.4	25	90	6	118	27	22	22	27	1.99
30942603--30942648	24	1.9	24	86	0	65	32	23	15	28	1.95
30942679--30942724	9	4.7	10	82	10	51	34	8	19	36	1.83
30942779--30942862	25	3.4	25	82	9	75	28	21	22	27	1.99
30942779--30942874	26	3.8	26	79	5	92	26	22	21	29	1.99
30942803--30942887	26	3.4	26	76	12	72	27	21	21	30	1.98
30943098--30943161	31	2.1	31	87	0	92	40	15	21	21	1.91
30944657--30944791	60	2.2	59	82	8	148	27	21	26	24	1.99
30946501--30946605	50	2.1	51	83	5	133	33	12	13	40	1.82
30957792--30957927	24	5.6	24	73	7	87	27	30	16	26	1.97
30957792--30957927	49	2.8	47	80	8	123	27	30	16	26	1.97
30958745--30959176	27	16.1	27	87	1	602	25	18	19	36	1.95
30958745--30959170	133	3.2	133	91	2	640	25	18	19	36	1.94
30961226--30961297	31	2.3	31	85	0	90	47	11	19	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30961792--30961901	27	4.1	27	86	8	136	37	20	21	20	1.95
30961792--30961901	54	2.1	54	86	5	152	37	20	21	20	1.95
30962125--30962719	27	22.2	27	88	1	831	24	19	19	36	1.95
30963285--30963327	20	2.2	20	82	0	50	44	2	2	51	1.27
30964196--30964362	46	3.6	46	77	13	180	29	28	20	20	1.98
30964201--30964371	93	1.8	93	88	0	261	29	29	21	20	1.98
30964794--30964853	30	2.0	30	90	0	93	30	25	8	36	1.85
30971682--30971940	40	6.5	40	87	5	280	25	28	22	23	1.99
30971705--30971940	79	3.0	80	83	7	275	25	28	22	24	1.99
30971705--30971938	118	2.0	120	83	6	298	25	28	21	24	1.99
30974198--30974240	20	2.2	20	82	0	50	44	2	2	51	1.27
30975114--30975284	93	1.8	93	89	2	272	27	28	21	22	1.99
30975111--30975281	46	3.7	45	74	16	163	28	28	21	22	1.99
30975706--30975765	30	2.0	30	86	0	84	31	25	6	36	1.82
30983532--30983616	24	3.5	24	76	6	82	32	27	15	24	1.95
30986070--30986191	18	6.6	18	71	8	84	63	3	22	9	1.39
30986185--30986216	15	2.0	17	88	11	50	56	3	28	12	1.51
30987004--30987075	35	2.1	35	100	0	144	30	8	22	38	1.83
30990991--30991024	15	2.3	15	89	0	50	50	0	14	35	1.44
30991150--30991219	3	24.3	3	80	8	74	62	0	5	31	1.18
30991139--30991231	41	2.2	41	83	9	118	62	0	9	27	1.26
30991291--30991323	17	1.9	17	88	11	50	60	6	12	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30991314--30991342	15	1.9	15	100	0	58	65	6	6	20	1.40
30991335--30991377	15	2.6	17	82	17	56	65	2	9	23	1.34
30991368--30991641	3	90.7	3	70	14	136	60	2	6	29	1.36
30991373--30991399	14	1.9	14	100	0	54	59	3	7	29	1.42
30991368--30991539	17	9.3	19	72	15	105	60	2	6	30	1.34
30991487--30991546	22	2.8	22	82	5	70	60	5	3	31	1.35
30993196--30993501	92	3.3	92	91	1	479	28	17	19	34	1.95
30993241--30993498	51	5.5	51	70	18	234	29	17	18	33	1.94
30993282--30993447	41	3.8	41	72	14	143	30	18	17	34	1.94
30993021--30993593	184	3.1	181	81	9	703	29	19	17	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259