genome.fa.s9.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  134  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43636518--43636575	30	1.9	30	82	6	73	63	1	10	24	1.35
43640013--43640038	13	2.0	13	100	0	52	38	15	23	23	1.92
43642856--43642945	47	2.0	45	88	2	126	27	21	30	21	1.98
43644989--43645557	283	2.0	284	95	0	1023	36	11	26	25	1.91
43651491--43651669	47	3.8	49	78	12	187	27	20	29	22	1.98
43652808--43652847	21	2.0	21	85	5	55	12	32	27	27	1.93
43655543--43655891	175	2.0	175	100	0	698	39	14	25	20	1.90
43664383--43664567	40	4.6	39	82	6	169	25	23	26	24	2.00
43664383--43664567	79	2.3	81	82	7	218	25	23	26	24	2.00
43665916--43665969	21	2.6	21	75	0	54	42	16	24	16	1.88
43665916--43666022	42	2.5	42	84	0	133	42	15	22	18	1.88
43666005--43666051	20	2.3	21	82	14	62	40	12	19	27	1.88
43673232--43673292	23	2.8	21	79	20	79	75	8	3	13	1.15
43673763--43673787	8	3.1	8	100	0	50	76	0	0	24	0.80
43676998--43677190	91	2.1	91	81	2	226	45	11	10	32	1.75
43677505--43677536	15	2.1	15	94	0	55	28	9	37	25	1.87
43678353--43678440	21	4.6	20	66	23	55	55	0	0	44	0.99
43678353--43678436	37	2.2	37	85	8	116	55	0	0	44	0.99
43678411--43678435	8	3.1	8	100	0	50	52	0	0	48	1.00
43678656--43678782	66	1.9	66	90	0	200	33	11	10	44	1.75
43696718--43696759	16	2.5	17	84	11	59	38	0	0	61	0.96
43696717--43696767	23	2.2	24	85	3	68	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43697146--43697205	31	1.9	31	86	0	84	18	16	11	53	1.72
43699418--43699502	42	2.0	42	100	0	170	34	18	2	44	1.63
43701914--43701970	26	2.2	26	87	0	78	56	14	7	22	1.62
43702986--43703030	21	2.1	22	87	4	65	60	4	4	31	1.37
43715239--43715358	9	12.8	9	69	18	50	60	0	6	32	1.29
43715317--43715358	18	2.2	20	87	8	61	61	0	2	35	1.09
43717856--43717902	23	2.0	23	100	0	94	29	17	17	36	1.92
43718667--43718705	11	3.5	11	93	6	62	25	35	0	38	1.56
43719885--43719916	7	4.6	7	92	0	55	28	0	9	62	1.26
43720819--43720876	21	2.8	21	79	10	57	32	46	13	6	1.70
43720983--43721497	131	3.9	132	95	1	892	34	4	4	56	1.40
43720983--43721497	264	2.0	264	94	2	901	34	4	4	56	1.40
43721451--43721535	39	2.2	38	81	6	100	41	4	7	47	1.52
43721523--43721553	9	3.4	9	90	0	53	38	3	0	58	1.15
43723659--43723697	19	2.0	20	85	14	55	53	5	2	38	1.37
43724315--43724354	22	1.9	21	85	10	55	25	20	7	47	1.75
43725241--43725768	265	2.0	265	92	0	887	38	14	12	33	1.85
43726470--43726507	18	2.1	18	90	0	58	21	26	10	42	1.85
43726738--43726788	21	2.4	21	76	0	57	29	47	15	7	1.74
43726894--43727405	132	3.9	131	93	1	857	35	3	5	55	1.39
43726895--43727405	263	1.9	262	92	1	864	35	3	5	55	1.40
43727359--43727443	39	2.2	38	81	6	100	41	5	5	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43727431--43727461	9	3.4	9	100	0	62	38	0	0	61	0.96
43731368--43731422	20	2.8	20	80	0	56	70	3	3	21	1.18
43731396--43731461	21	3.1	21	75	12	71	65	1	3	30	1.17
43731396--43731461	22	3.0	22	82	4	89	65	1	3	30	1.17
43731553--43731579	2	13.5	2	100	0	54	51	0	0	48	1.00
43731899--43732064	29	5.6	30	74	16	132	33	3	0	62	1.15
43731899--43732041	61	2.5	59	84	8	170	33	2	0	63	1.11
43731924--43732050	10	12.8	10	71	12	84	33	1	0	64	1.03
43732866--43732910	23	2.0	23	91	4	74	46	17	4	31	1.68
43732863--43732926	22	3.0	21	82	12	78	43	18	4	32	1.71
43734998--43735022	7	3.6	7	100	0	50	28	0	0	72	0.86
43736548--43736592	23	2.0	23	86	4	65	48	17	2	31	1.59
43736545--43736601	22	2.6	21	83	8	69	45	19	1	33	1.61
43737644--43737685	16	2.7	16	81	3	50	59	2	35	2	1.23
43738455--43738493	9	4.1	9	81	12	51	28	0	0	71	0.86
43742249--43742290	18	2.3	19	80	12	52	26	35	33	4	1.77
43742848--43742876	14	2.1	14	100	0	58	41	0	6	51	1.28
43742819--43743048	62	3.7	62	94	0	397	48	8	7	36	1.61
43742904--43742938	14	2.5	14	90	0	52	42	2	5	48	1.41
43747141--43747288	72	2.1	71	89	6	228	19	6	23	50	1.70
43747761--43747805	13	3.4	13	81	3	54	17	8	11	62	1.53
43751034--43751119	9	9.0	10	74	15	60	58	3	0	38	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43750992--43751103	9	12.1	9	71	12	75	58	4	1	35	1.29
43751031--43751121	28	3.3	26	76	11	74	59	3	0	37	1.14
43751031--43751098	19	3.6	19	78	18	63	63	2	0	33	1.10
43751076--43751185	29	3.8	29	70	17	86	57	4	3	34	1.37
43759493--43759534	21	2.0	20	82	13	50	38	23	16	21	1.93
43763351--43763565	46	4.6	45	72	12	134	28	19	28	23	1.98
43766685--43766743	21	2.9	20	83	11	59	35	0	5	59	1.20
43766685--43766731	21	2.2	21	92	3	76	34	0	6	59	1.23
43766728--43766778	9	5.7	9	77	13	52	29	0	1	68	1.00
43766825--43766866	17	2.4	18	88	7	61	28	0	2	69	1.01
43766822--43766890	25	2.7	26	78	13	81	28	2	2	65	1.22
43766822--43766908	26	3.4	25	73	10	79	26	3	4	65	1.28
43786712--43787229	259	2.0	258	91	1	833	30	20	11	36	1.89
43792225--43792556	47	7.1	47	93	0	540	31	9	30	28	1.88
43792675--43792753	37	2.1	37	88	4	115	25	18	30	25	1.98
43794570--43794621	20	2.6	20	81	0	68	34	19	19	26	1.95
43811548--43811655	53	2.1	53	92	1	182	22	13	9	54	1.67
43815210--43815275	34	2.0	33	81	3	78	24	19	0	56	1.43
43815223--43815286	33	1.9	34	84	9	87	20	20	0	59	1.38
43820800--43820939	73	1.9	73	92	0	235	25	4	20	50	1.66
43824123--43824156	17	1.9	18	88	5	52	61	8	23	5	1.47
43828515--43828542	12	2.3	12	100	0	56	7	17	35	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43831203--43831234	15	2.1	16	94	5	57	59	0	21	18	1.38
43831202--43831253	20	2.6	20	84	0	68	51	1	23	23	1.58
43833826--43833852	5	5.4	5	100	0	54	40	0	0	59	0.98
43835979--43836051	37	2.0	37	100	0	146	30	10	21	36	1.88
43837070--43837177	37	2.9	37	78	16	102	40	3	3	51	1.37
43837415--43837439	11	2.3	11	100	0	50	20	16	12	52	1.75
43839835--43839967	56	2.4	53	75	11	126	59	3	5	32	1.35
43839929--43839977	20	2.6	18	78	15	53	63	4	0	32	1.13
43840026--43840079	9	5.8	9	80	8	63	62	1	3	31	1.23
43840014--43840080	19	3.5	19	76	8	73	61	5	2	29	1.35
43840017--43840089	29	2.5	29	73	8	69	63	6	2	27	1.34
43840468--43840656	10	20.0	9	70	14	78	36	2	4	57	1.30
43840468--43840646	19	9.5	19	72	16	90	36	2	4	56	1.32
43840463--43840558	45	2.1	44	78	16	99	34	3	3	59	1.29
43840632--43840662	10	3.1	10	100	0	62	29	0	0	70	0.87
43844229--43844263	18	2.0	17	94	5	61	57	0	0	42	0.99
43849039--43849069	11	2.8	11	95	0	53	29	3	48	19	1.64
43853119--43853209	18	5.1	18	89	0	128	32	13	21	31	1.92
43853121--43853209	36	2.5	36	90	0	142	32	13	22	31	1.93
43853759--43853789	11	2.8	11	95	0	53	29	3	48	19	1.64
43860147--43860189	20	2.0	22	91	8	72	48	0	0	51	1.00
43860161--43860258	29	3.2	29	76	5	106	57	0	1	41	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43860176--43860258	20	4.1	20	73	14	80	57	0	1	40	1.06
43860167--43860246	9	8.3	9	70	17	54	56	0	1	42	1.07
43862201--43862234	17	2.0	17	94	0	59	35	26	29	8	1.87
43862794--43862850	9	6.2	9	76	9	53	54	0	1	43	1.10
43862782--43862862	29	2.8	29	79	9	101	53	1	1	44	1.16
43862799--43862845	20	2.3	20	92	0	76	57	0	2	40	1.11
43863066--43863099	18	1.9	18	88	5	52	38	2	2	55	1.30
43868356--43868380	1	25.0	1	100	0	50	0	0	0	100	0.00
43872830--43872888	18	3.5	18	75	15	63	42	0	3	54	1.17
43872850--43873147	146	2.0	147	95	1	535	50	10	1	37	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259