genome.fa.s9.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  36  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10613691--10613728	16	2.4	16	100	0	76	63	7	10	18	1.50
10621102--10621139	16	2.4	16	100	0	76	63	7	10	18	1.50
10621624--10621748	64	2.0	62	86	7	175	36	8	4	50	1.55
10623372--10623415	22	1.9	24	86	9	65	56	0	4	38	1.20
10623403--10623447	22	2.1	22	87	4	65	73	4	2	20	1.11
10628339--10628412	37	2.0	37	100	0	148	35	2	8	54	1.44
10633237--10633278	15	2.9	15	82	10	52	47	0	0	52	1.00
10633431--10633521	45	2.0	44	85	2	119	34	27	5	32	1.80
10633500--10633553	16	3.4	16	92	0	81	31	33	0	35	1.58
10634903--10634962	27	2.2	27	81	0	66	23	25	28	23	2.00
10638223--10638280	31	1.9	30	89	6	91	55	3	1	39	1.27
10638322--10638364	22	2.0	21	86	4	59	46	0	4	48	1.22
10638981--10639064	19	4.3	19	65	28	59	54	15	0	29	1.41
10638906--10639084	60	3.0	60	92	0	295	54	12	0	32	1.38
10638986--10639028	22	2.0	22	86	9	61	53	13	0	32	1.41
10639136--10639178	14	2.9	15	79	10	52	65	4	0	30	1.13
10639242--10639306	13	4.8	13	80	10	53	0	24	0	75	0.81
10639245--10639308	19	3.3	19	81	16	69	0	26	0	73	0.84
10639241--10639308	27	2.5	28	83	9	86	0	26	0	73	0.83
10639241--10639308	28	2.5	27	81	13	77	0	26	0	73	0.83
10639241--10639307	22	3.2	21	78	17	68	0	25	0	74	0.82
10639245--10639308	9	6.5	10	75	24	57	0	26	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10639575--10639630	26	2.1	25	83	12	67	60	5	0	33	1.19
10639575--10639630	30	1.9	28	85	7	76	60	5	0	33	1.19
10642193--10642377	40	4.6	40	81	5	196	23	22	28	25	2.00
10642192--10642377	80	2.3	82	81	7	220	23	22	28	25	1.99
10645326--10645372	24	2.0	24	91	0	76	34	17	6	42	1.74
10645454--10645518	12	5.3	12	77	3	58	35	18	10	35	1.86
10645457--10645513	25	2.3	25	78	3	62	38	17	10	33	1.84
10650569--10650633	20	3.2	20	67	16	53	15	27	20	36	1.92
10654813--10654854	14	3.1	14	73	13	52	33	42	0	23	1.55
10654803--10654859	26	2.2	25	96	3	105	36	42	0	21	1.53
10655070--10655135	25	2.7	25	85	2	98	21	28	9	40	1.83
10659728--10659767	21	2.0	20	90	5	62	35	0	22	42	1.54
10659733--10659775	21	2.1	21	83	12	54	32	2	20	44	1.65
10661100--10661131	6	5.3	6	92	0	55	50	15	15	18	1.79
10661870--10661945	38	2.0	38	100	0	152	52	15	10	21	1.72
10673057--10673452	164	2.5	159	81	6	437	41	23	8	27	1.82
10673964--10674009	23	2.0	23	100	0	92	43	17	13	26	1.85
10679601--10679671	35	2.0	35	94	0	124	32	15	12	39	1.85
10680499--10680610	27	4.2	26	87	7	152	36	23	24	16	1.94
10680499--10680610	54	2.1	54	89	3	172	36	23	24	16	1.94
10696531--10696928	50	7.9	50	76	2	341	26	17	25	30	1.97
10696497--10696925	151	2.8	150	83	1	552	26	16	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10704252--10704366	43	2.7	42	77	6	133	33	16	24	26	1.96
10705831--10705910	38	2.1	38	100	0	160	30	12	16	41	1.85
10713212--10713313	28	3.5	27	71	19	80	24	28	20	26	1.99
10713213--10713340	60	2.1	59	84	9	161	25	25	21	28	1.99
10715354--10715397	19	2.4	18	85	7	54	45	6	0	47	1.29
10718008--10718047	20	2.0	21	90	5	64	37	22	22	17	1.94
10722701--10722816	43	2.7	42	77	2	133	23	36	26	13	1.92
10722803--10722911	43	2.6	43	85	4	114	22	31	29	16	1.96
10722820--10722922	43	2.4	43	90	0	152	18	31	32	18	1.95
10723244--10723311	24	2.8	24	95	0	118	13	39	38	8	1.75
10736597--10736643	6	7.8	6	76	9	51	76	2	4	17	1.04
10739796--10739949	76	2.0	76	96	0	281	24	16	14	44	1.84
10741857--10741889	13	2.6	13	90	4	50	48	12	0	39	1.40
10747559--10747702	46	3.1	45	71	18	118	29	27	18	23	1.98
10748105--10748164	30	2.0	30	86	0	84	33	25	5	36	1.78
10763686--10763733	16	3.0	17	79	11	57	0	25	0	75	0.81
10763688--10763727	12	3.1	13	89	10	64	0	22	0	77	0.77
10769926--10770154	116	2.0	116	91	0	368	44	15	6	33	1.74
10770496--10770603	48	2.2	48	86	0	144	33	12	14	38	1.85
10779232--10779318	44	2.0	44	90	0	138	32	29	26	11	1.91
10779222--10779317	22	4.4	22	86	0	120	31	30	28	10	1.90
10779234--10779330	44	2.2	44	84	0	131	32	28	26	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10779563--10779654	27	3.4	26	79	7	85	27	18	16	38	1.92
10782946--10783067	43	2.9	42	78	7	131	28	22	17	31	1.97
10796169--10796211	16	2.6	16	79	17	52	67	0	4	27	1.10
10798152--10798271	47	2.6	47	78	2	116	30	29	6	34	1.83
10801122--10801166	21	2.1	21	84	8	56	75	0	11	13	1.05
10807692--10807821	57	2.3	58	79	4	147	30	17	22	30	1.97
10822443--10822516	29	2.6	29	84	4	87	28	14	32	24	1.95
10827283--10827510	40	5.5	42	82	7	281	23	22	28	26	1.99
10827283--10827484	83	2.4	83	93	0	341	22	21	28	26	1.99
10827283--10827510	83	2.8	82	90	2	291	23	22	28	26	1.99
10835371--10835638	40	6.6	40	80	7	299	23	21	28	27	1.99
10835371--10835612	83	2.9	83	91	2	362	22	20	28	27	1.99
10835382--10835638	123	2.1	121	81	7	297	23	21	28	26	1.99
10838915--10838956	22	2.1	19	86	13	57	45	2	0	52	1.13
10838912--10838953	16	2.7	15	79	20	50	45	2	0	52	1.13
10854344--10854509	46	3.6	46	79	13	223	29	28	19	21	1.98
10854292--10854514	93	2.4	93	99	0	437	29	27	20	22	1.98
10854297--10854463	47	3.6	47	79	13	218	28	28	19	22	1.98
10854290--10854530	46	5.2	46	70	15	185	29	28	19	22	1.98
10859567--10859598	16	2.0	16	100	0	64	25	12	18	43	1.85
10866870--10866925	22	2.5	23	91	5	96	41	14	5	39	1.68
10883340--10883562	39	5.7	40	83	5	258	26	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10883307--10883562	79	3.2	80	80	7	265	26	26	20	26	1.99
10891290--10891547	79	3.3	78	82	7	279	25	26	20	26	1.99
10891323--10891545	119	1.9	120	86	4	326	26	27	21	25	1.99
10891323--10891547	40	5.7	40	85	3	285	26	27	21	25	1.99
10894447--10894477	15	2.1	15	100	0	62	32	12	19	35	1.90
10904208--10904285	40	2.0	40	82	5	95	30	16	20	32	1.95
10909352--10909412	30	2.1	29	90	9	97	59	18	13	9	1.61
10909356--10909417	15	4.2	14	78	15	63	59	16	12	11	1.61
10920304--10920447	46	3.1	45	71	18	118	29	27	18	23	1.98
10920849--10920908	30	2.0	30	86	0	84	33	25	5	36	1.78
10927847--10928017	93	1.8	93	91	2	281	29	28	19	21	1.98
10927842--10928014	46	3.7	46	78	11	192	30	27	19	21	1.98
10927892--10928033	46	3.1	45	74	18	132	28	28	19	23	1.98
10935309--10935420	43	2.6	43	86	10	158	31	27	17	23	1.97
10939961--10940212	84	3.0	84	84	3	258	28	25	21	23	1.99
10939961--10940213	43	6.0	43	73	9	196	28	25	21	24	1.99
10940074--10940230	43	3.7	43	75	10	160	28	23	21	26	1.99
10940530--10940571	21	2.0	21	90	0	66	4	54	16	23	1.61
10941132--10941169	19	2.1	18	85	9	51	52	0	7	39	1.31
10946287--10946330	21	2.1	21	82	0	52	38	11	11	38	1.77
10946711--10946750	21	1.9	21	94	0	71	47	12	10	30	1.74
10951943--10951973	15	2.1	15	93	0	53	32	9	0	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10952006--10952047	22	1.9	22	90	0	66	40	33	7	19	1.78
10952342--10952393	25	2.1	25	96	0	95	42	21	7	28	1.80
10952805--10953039	41	5.8	41	85	4	289	19	22	21	36	1.95
10969373--10969414	18	2.3	19	80	12	52	76	0	7	16	1.00
10969382--10969415	6	5.7	6	85	0	50	76	0	5	17	0.98
10975893--10975931	20	2.0	20	85	10	53	7	28	5	58	1.47
10986406--10986467	31	2.0	32	96	3	117	50	14	3	32	1.59
10987308--10987342	16	2.2	16	90	5	54	25	8	0	65	1.21
10996231--10996256	12	2.2	12	100	0	52	7	23	42	26	1.81
10997311--10997493	40	4.5	40	81	2	215	33	27	14	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259