genome.fa.s9.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  200  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63671782--63672137	150	2.4	149	89	4	476	34	14	21	28	1.93
63673476--63673717	49	4.9	49	95	0	421	23	16	30	29	1.96
63676843--63677209	46	7.6	49	86	8	422	34	14	22	28	1.93
63676843--63677209	98	3.7	97	83	9	483	34	14	22	28	1.93
63676857--63677209	196	1.8	196	91	0	589	35	14	22	28	1.93
63677173--63677282	37	3.0	37	94	1	195	37	16	21	24	1.93
63676843--63677198	150	2.4	149	89	4	476	34	14	21	28	1.93
63679115--63679221	53	2.0	53	96	0	196	35	21	18	24	1.96
63680681--63680751	27	2.7	26	77	4	79	57	4	4	33	1.37
63680743--63680809	21	3.2	20	80	15	75	61	0	7	31	1.24
63681558--63681588	10	3.1	10	90	0	53	9	0	6	83	0.79
63683124--63683154	12	2.6	12	94	0	53	35	29	35	0	1.58
63683309--63683421	33	3.4	34	78	11	110	18	43	10	27	1.83
63685051--63685084	17	2.0	17	88	11	52	23	26	20	29	1.99
63689896--63689929	17	2.0	17	88	11	52	23	26	20	29	1.99
63692844--63692906	27	2.3	27	77	0	63	30	25	23	20	1.99
63696278--63696340	31	2.0	31	100	0	126	39	12	12	34	1.82
63697350--63697540	18	10.6	18	75	10	158	36	16	13	34	1.87
63697350--63697552	54	3.8	54	76	6	196	36	16	12	34	1.87
63697351--63697552	72	2.8	70	78	5	215	36	16	12	34	1.87
63697669--63697775	47	2.3	47	88	0	160	39	21	20	18	1.93
63697804--63697828	12	2.1	12	100	0	50	40	20	24	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63703184--63703479	18	16.1	18	71	11	152	36	16	12	35	1.86
63703277--63703479	18	11.3	18	76	8	153	36	15	12	35	1.85
63703278--63703479	72	2.8	71	80	6	203	36	15	12	35	1.86
63703674--63703698	12	2.1	12	100	0	50	40	20	24	16	1.91
63704276--63704320	19	2.4	18	86	13	65	0	33	0	66	0.92
63707038--63707197	32	5.0	32	90	0	257	33	11	10	45	1.74
63709209--63709261	21	2.5	21	93	0	88	30	35	9	24	1.87
63710163--63710207	23	2.1	22	84	12	58	22	13	4	60	1.51
63711167--63711201	18	1.9	18	88	0	52	48	0	0	51	1.00
63711160--63711220	22	2.8	22	78	7	70	47	1	1	49	1.21
63716754--63716818	31	2.1	31	91	0	103	40	9	16	33	1.81
63718717--63718746	15	2.0	15	93	0	51	43	0	23	33	1.54
63719265--63719322	29	2.0	29	86	0	80	5	24	17	53	1.64
63721224--63721277	26	2.1	26	92	0	90	35	7	14	42	1.74
63722272--63722360	42	2.1	42	83	2	108	21	8	40	29	1.83
63725891--63725997	53	2.0	53	87	3	153	23	12	28	36	1.90
63725944--63726063	47	2.6	45	86	5	152	24	13	26	35	1.92
63728619--63728990	130	2.9	129	83	1	440	29	18	18	34	1.94
63732576--63732627	21	2.5	21	96	3	97	26	19	9	44	1.81
63740789--63741160	44	8.5	44	89	1	550	28	14	28	27	1.95
63747977--63748019	14	3.3	14	81	15	56	34	0	9	55	1.32
63764870--63765045	37	4.8	37	96	0	298	39	13	21	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63765008--63765131	46	2.8	46	91	3	200	33	16	22	27	1.96
63775508--63775536	13	2.1	14	93	6	51	51	0	3	44	1.18
63775767--63775820	23	2.4	23	78	9	58	50	1	1	46	1.23
63775995--63776078	28	3.0	28	87	1	123	19	4	30	45	1.71
63776377--63776405	13	2.1	14	93	6	51	44	3	0	51	1.18
63776601--63776629	13	2.1	14	93	6	51	51	0	3	44	1.18
63777141--63777204	31	2.0	32	85	8	87	45	0	7	46	1.32
63778133--63778176	15	2.9	15	82	0	61	36	2	13	47	1.56
63778685--63778758	19	4.2	19	69	20	63	45	4	21	28	1.70
63778701--63778766	33	2.0	33	100	0	132	45	9	18	27	1.79
63779958--63780087	60	2.2	60	87	5	183	26	23	20	30	1.98
63787166--63787201	17	2.2	17	90	9	58	22	38	30	8	1.83
63791125--63791155	16	2.0	16	93	6	55	6	16	0	77	0.97
63796635--63796722	21	4.0	21	79	5	86	14	30	27	27	1.95
63801560--63801618	29	2.0	30	86	6	84	20	40	0	38	1.53
63801695--63801754	18	3.4	18	69	17	54	23	26	0	50	1.50
63806830--63807221	131	3.0	130	87	2	536	37	19	17	25	1.93
63816689--63816714	4	6.5	4	100	0	52	76	0	0	23	0.78
63818125--63818196	36	2.0	36	100	0	144	36	11	22	30	1.89
63824164--63824220	19	3.1	18	73	14	53	63	1	0	35	1.05
63824153--63824230	20	4.0	20	75	13	63	62	1	0	35	1.03
63824375--63824409	10	3.4	10	88	7	52	71	0	5	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63824430--63824625	28	6.9	28	69	13	89	31	4	1	62	1.25
63824430--63824652	9	23.8	9	64	15	51	30	4	2	63	1.26
63824534--63824626	19	5.0	19	71	18	70	37	2	0	60	1.09
63833681--63833732	21	2.5	21	84	3	61	51	3	11	32	1.56
63838923--63838968	21	2.2	21	84	7	58	56	0	2	41	1.11
63839325--63839376	26	2.0	25	82	10	61	40	5	1	51	1.37
63839560--63839593	16	2.1	16	94	0	59	41	0	0	58	0.98
63840597--63840626	11	2.7	11	100	0	60	63	0	20	16	1.31
63852181--63852219	19	2.1	19	100	0	78	38	15	10	35	1.81
63853458--63853614	78	2.0	78	89	0	242	38	14	15	31	1.87
63862350--63862475	47	2.7	47	85	2	155	30	25	14	29	1.95
63862479--63862507	7	4.1	7	100	0	58	13	27	13	44	1.82
63862506--63862714	31	6.7	31	88	0	292	26	26	18	28	1.98
63862692--63862868	50	3.5	50	86	2	239	27	21	15	35	1.93
63865412--63865580	27	6.3	26	77	9	90	40	21	8	28	1.83
63865404--63865581	54	3.3	54	75	6	164	39	21	8	29	1.84
63865412--63865581	81	2.1	81	81	6	193	40	21	8	28	1.83
63865531--63865698	54	3.1	54	86	2	158	33	23	5	36	1.79
63865558--63865698	27	5.2	27	89	2	203	31	23	5	39	1.78
63866223--63866294	6	11.8	6	78	14	76	18	18	16	47	1.83
63866200--63866280	31	2.6	31	86	5	110	18	17	17	46	1.84
63871992--63872017	13	2.0	13	100	0	52	23	38	30	7	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63890196--63890236	21	2.0	21	100	0	82	58	17	14	9	1.62
63891687--63891725	3	13.0	3	94	0	69	30	2	33	33	1.72
63914732--63914796	20	3.3	20	70	12	62	43	1	0	55	1.09
63914744--63914808	20	3.3	19	76	6	67	46	3	0	50	1.17
63914839--63914899	17	3.5	17	68	24	54	67	3	3	26	1.22
63919632--63919725	45	2.1	45	95	0	170	32	19	13	34	1.91
63921249--63921293	23	1.9	24	86	4	65	40	0	0	60	0.97
63921254--63921292	15	2.5	15	79	4	51	43	0	0	56	0.99
63921794--63921867	31	2.4	31	81	9	87	41	0	5	52	1.24
63923902--63923968	33	2.0	33	97	0	125	31	4	22	41	1.73
63924760--63924829	26	2.7	26	86	6	99	21	24	17	37	1.94
63924786--63924862	23	3.2	23	88	5	100	16	24	22	36	1.94
63924810--63924880	23	3.1	22	86	8	72	18	26	21	33	1.96
63924988--63925035	25	1.9	25	87	8	71	29	22	8	39	1.83
63927905--63928050	37	4.0	37	93	1	242	24	21	16	36	1.94
63928014--63928282	46	5.6	46	83	10	331	28	22	14	34	1.93
63928103--63928136	7	4.7	7	88	3	50	26	26	2	44	1.69
63928057--63928276	52	4.3	52	83	8	290	28	22	13	35	1.92
63928031--63928282	98	2.6	98	94	0	441	29	21	14	34	1.93
63933653--63933693	21	2.0	21	90	0	64	46	19	0	34	1.50
63937707--63937776	30	2.4	30	83	9	92	17	7	0	75	1.01
63937702--63937779	5	14.8	5	80	9	50	17	6	0	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63937885--63937996	42	2.6	42	87	4	154	29	33	12	24	1.92
63937885--63938018	42	3.2	42	85	5	119	31	35	11	20	1.89
63938776--63938988	118	1.8	118	96	0	399	22	15	31	30	1.95
63939135--63939168	9	3.9	9	92	7	61	91	0	8	0	0.43
63939133--63939205	12	6.6	11	73	14	62	83	0	12	4	0.78
63939135--63939167	17	1.9	17	100	0	66	90	0	9	0	0.44
63940974--63941038	32	2.0	32	100	0	130	43	9	9	38	1.69
63942634--63942907	46	6.0	46	90	2	374	22	22	14	39	1.92
63946115--63946149	3	11.7	3	100	0	70	34	0	0	65	0.93
63967692--63967720	6	4.8	6	100	0	58	13	0	68	17	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259