genome.fa.s9.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  214  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67767906--67767957	21	2.5	21	90	0	77	15	28	26	28	1.96
67771688--67771720	17	2.0	17	88	5	50	36	12	0	51	1.39
67772001--67772274	46	6.0	46	90	0	388	20	24	14	40	1.90
67772006--67772278	92	3.0	92	91	0	429	20	24	14	40	1.90
67776364--67776646	18	15.3	18	70	11	142	36	15	12	34	1.86
67776445--67776646	72	2.8	71	79	5	201	37	15	12	34	1.85
67780153--67780188	12	2.9	12	91	4	54	75	2	16	5	1.12
67780435--67780468	16	2.1	17	88	5	52	32	0	32	35	1.58
67790097--67790124	7	4.0	7	100	0	56	14	14	28	42	1.84
67792341--67792589	50	4.8	50	84	4	275	20	29	23	26	1.99
67792340--67792586	100	2.4	105	86	7	344	21	29	23	25	1.99
67792683--67792714	13	2.5	13	94	0	55	56	12	0	31	1.37
67792986--67793029	5	8.2	5	94	5	61	56	0	0	43	0.99
67794206--67794375	91	1.9	91	91	0	277	40	9	15	35	1.79
67809963--67810021	30	2.0	30	86	6	84	32	22	3	42	1.70
67811270--67811300	14	2.2	14	100	0	62	45	12	6	35	1.68
67819533--67819646	45	2.6	45	84	8	137	25	28	22	22	1.99
67819814--67820009	43	4.6	43	92	1	295	33	20	14	31	1.93
67821842--67821878	20	1.9	18	89	10	56	35	21	0	43	1.53
67833836--67833880	21	2.1	21	91	0	72	31	17	20	31	1.96
67836047--67836083	16	2.2	18	85	9	51	0	27	0	72	0.84
67839759--67840021	39	6.7	39	92	2	343	30	28	22	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67847497--67847530	5	6.8	5	96	0	50	5	0	61	32	1.20
67859335--67859371	18	2.0	20	89	10	60	32	0	0	67	0.91
67859826--67859869	20	2.1	21	83	4	54	68	6	2	22	1.25
67860037--67860084	22	2.2	22	84	0	60	41	4	0	54	1.20
67865483--67865511	3	9.7	3	100	0	58	0	65	0	34	0.93
67877295--67877344	17	2.7	20	78	18	70	10	0	44	46	1.37
67881934--67881983	17	2.7	20	78	18	70	10	0	44	46	1.37
67884953--67884997	18	2.6	17	78	3	54	48	2	2	46	1.26
67885018--67885068	8	5.9	8	75	24	50	50	1	0	47	1.12
67885018--67885068	18	2.8	18	80	11	68	50	1	0	47	1.12
67891874--67891914	20	2.0	20	100	0	82	43	9	29	17	1.80
67893357--67893387	11	2.8	11	95	0	53	29	3	48	19	1.64
67897435--67897527	18	5.2	18	88	0	132	32	15	23	29	1.95
67897433--67897527	36	2.6	36	91	0	154	31	15	23	29	1.95
67898072--67898102	11	2.8	11	95	0	53	29	3	48	19	1.64
67900847--67900922	35	2.2	34	90	6	127	43	7	9	39	1.66
67900855--67900926	35	2.1	35	100	0	144	44	8	8	38	1.65
67905007--67905035	6	4.8	6	100	0	58	13	17	68	0	1.20
67910687--67910880	96	2.0	96	83	4	239	13	32	18	35	1.89
67915079--67915281	46	4.3	48	88	7	265	35	14	21	28	1.92
67915013--67915281	98	2.7	98	93	0	457	34	14	22	28	1.93
67915245--67915390	37	4.0	37	93	1	242	36	16	21	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67916646--67916813	58	3.0	58	87	10	237	22	13	30	33	1.92
67916665--67916755	28	3.2	28	66	22	80	25	15	31	27	1.95
67916706--67916848	49	2.9	49	93	0	232	23	13	30	32	1.94
67920037--67920239	46	4.3	48	88	7	265	35	14	21	28	1.92
67919971--67920239	98	2.7	98	93	0	457	34	14	22	28	1.93
67920203--67920348	37	4.0	37	93	1	242	36	16	21	24	1.94
67936345--67936603	46	5.6	46	87	2	351	41	13	23	21	1.89
67936345--67936605	138	1.9	138	93	1	452	41	13	23	21	1.89
67937930--67937958	11	2.5	12	94	5	51	0	27	0	72	0.85
67938109--67938158	17	2.8	17	84	6	64	34	18	6	42	1.74
67939799--67939833	13	2.6	13	90	4	52	54	0	20	25	1.45
67948305--67948457	77	2.0	78	90	3	247	49	6	11	33	1.64
67955284--67955415	40	3.3	40	84	0	165	30	12	21	35	1.91
67955386--67955537	78	1.9	78	89	0	232	32	15	19	31	1.94
67962653--67962867	46	4.7	46	88	0	268	40	12	24	21	1.88
67963165--67963197	17	2.0	17	94	5	59	48	0	15	36	1.45
67965463--67965558	40	2.4	41	82	6	117	26	17	31	25	1.97
67968314--67968370	30	1.9	30	92	3	98	68	1	0	29	1.00
67968313--67968377	29	2.2	29	86	5	96	64	4	0	30	1.14
67969430--67969458	3	9.7	3	100	0	58	31	0	0	68	0.89
67988708--67988813	52	2.0	52	100	0	212	33	15	16	33	1.90
67991551--67991582	13	2.3	15	89	10	50	25	21	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68001536--68001572	18	2.2	18	85	9	51	81	2	10	5	0.96
68008898--68008938	21	2.0	21	90	0	64	26	41	7	24	1.81
68009969--68010003	15	2.3	15	100	0	70	51	11	20	17	1.75
68014783--68014814	15	2.1	15	100	0	64	53	0	18	28	1.45
68015097--68015179	43	2.0	42	95	2	148	45	8	22	22	1.79
68017507--68017539	10	3.4	10	91	4	50	33	0	0	66	0.92
68017494--68017537	22	2.0	22	82	8	54	34	2	0	63	1.07
68023793--68023858	32	2.1	32	100	0	132	33	12	24	30	1.91
68026378--68026411	15	2.2	16	94	5	61	70	0	0	29	0.87
68026376--68026409	17	1.9	17	88	5	50	70	0	0	29	0.87
68042302--68042356	27	2.0	27	100	0	110	43	16	14	25	1.86
68045361--68045390	14	2.1	14	93	0	51	23	0	3	73	0.98
68053696--68054042	50	6.8	50	81	6	380	20	28	24	26	1.99
68053696--68054038	100	3.4	100	91	5	530	20	28	24	26	1.99
68054137--68054168	13	2.5	13	94	0	55	56	12	0	31	1.37
68054380--68054437	30	1.9	30	89	0	89	31	24	3	41	1.71
68061385--68061734	50	6.8	50	82	4	389	20	29	24	26	1.99
68061385--68061730	101	3.4	101	93	4	552	20	28	24	26	1.99
68061384--68061731	151	2.3	154	82	6	436	20	29	24	25	1.99
68061829--68061860	13	2.5	13	94	0	55	56	12	0	31	1.37
68062072--68062128	29	1.9	30	85	3	80	31	24	3	40	1.72
68066959--68067083	46	2.7	46	86	2	171	41	12	24	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68072291--68072333	23	1.9	22	90	4	68	32	6	0	60	1.23
68072391--68072436	22	2.1	22	84	8	58	54	0	10	34	1.36
68074475--68074540	31	2.2	31	86	2	89	43	0	4	51	1.22
68074788--68074824	20	1.9	20	88	5	58	37	0	0	62	0.96
68076012--68076066	24	2.3	24	83	0	74	40	18	18	23	1.91
68076223--68076272	25	2.0	25	100	0	100	40	32	4	24	1.73
68088437--68088494	29	2.0	29	100	0	116	37	41	6	13	1.72
68097994--68098127	3	45.0	3	67	14	55	61	1	8	29	1.34
68098308--68098632	3	107.3	3	65	13	89	57	3	8	30	1.44
68100306--68100431	64	2.0	64	93	0	216	32	22	18	26	1.97
68100370--68100682	75	4.2	75	91	1	457	34	17	15	31	1.92
68110798--68110969	93	1.8	93	93	0	299	28	28	20	22	1.99
68110799--68110966	46	3.6	46	78	10	189	29	27	20	22	1.98
68113788--68113839	22	2.4	21	87	6	68	65	3	3	26	1.27
68113687--68113822	3	45.0	3	69	12	73	61	0	7	30	1.29
68114000--68114230	3	77.0	3	68	10	98	58	2	7	31	1.39
68114635--68114661	7	3.9	7	100	0	54	11	0	0	88	0.50
68115148--68115174	7	3.9	7	100	0	54	11	0	44	44	1.39
68115111--68115197	45	2.0	44	83	2	111	14	1	39	44	1.53
68116180--68116287	45	2.4	45	83	8	125	26	26	23	23	2.00
68116617--68116735	59	2.0	59	96	0	220	29	32	26	10	1.91
68116652--68116692	16	2.6	16	96	0	73	29	29	31	9	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68116737--68116937	38	5.3	38	85	3	269	30	25	21	22	1.99
68121491--68121524	7	4.9	7	88	0	50	32	2	26	38	1.71
68125490--68125544	27	2.1	26	83	10	67	74	3	3	18	1.11
68125654--68125686	17	1.9	17	88	11	50	24	3	3	69	1.16
68143557--68143600	17	2.5	17	92	3	70	75	2	9	13	1.14
68143755--68144216	216	2.1	214	94	0	807	40	9	6	43	1.63
68144166--68144204	19	2.1	19	85	9	53	30	2	0	66	1.05
68144279--68144321	17	2.5	17	92	3	68	4	9	9	76	1.14
68155401--68155430	16	1.9	16	93	6	53	43	0	13	43	1.43
68156284--68156353	16	4.7	15	70	22	51	32	1	0	65	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259