genome.fa.s9.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  147  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48058395--48058501	30	3.7	28	76	13	108	29	2	3	63	1.26
48058411--48058516	10	10.7	10	74	9	56	29	2	2	65	1.21
48058410--48058501	19	4.8	19	73	11	71	30	2	2	65	1.16
48058421--48058616	18	10.3	19	66	14	82	28	3	2	66	1.20
48058411--48058541	29	4.5	29	76	8	115	28	3	2	66	1.19
48058374--48058523	58	2.5	58	84	7	187	26	4	4	65	1.28
48058429--48058540	10	11.5	10	71	12	72	25	3	2	68	1.18
48058440--48058540	40	2.5	40	82	6	116	24	3	2	68	1.21
48062410--48062454	23	2.0	23	86	4	65	31	15	4	48	1.65
48062814--48062861	15	3.2	15	87	0	69	62	2	6	29	1.31
48064195--48064266	34	2.1	34	97	0	135	23	27	20	27	1.99
48071385--48071484	35	2.9	34	89	3	137	16	14	28	42	1.86
48071596--48071670	36	2.1	36	92	0	123	29	2	22	45	1.66
48071810--48071907	35	2.8	35	92	3	162	15	12	29	42	1.83
48074548--48074581	17	1.9	18	94	5	61	14	0	29	55	1.40
48079779--48079818	19	2.0	21	85	9	57	25	30	5	40	1.77
48096423--48096588	43	3.9	43	81	5	167	25	15	26	31	1.96
48098927--48098961	18	1.9	19	88	11	56	31	25	2	40	1.70
48105720--48105845	49	2.6	49	82	3	146	29	19	26	23	1.99
48112581--48112642	16	3.8	16	69	23	56	43	0	19	37	1.51
48113497--48113622	49	2.6	49	87	3	173	30	19	26	23	1.98
48116746--48116869	43	2.9	43	80	2	142	22	16	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48124071--48124192	43	2.9	42	81	2	163	31	14	23	29	1.95
48124278--48124315	20	1.9	20	88	0	58	28	2	34	34	1.71
48125301--48125341	22	1.9	22	90	5	66	21	26	39	12	1.89
48128315--48128376	19	3.2	19	68	20	56	20	14	12	51	1.75
48128746--48128786	17	2.4	17	95	0	73	51	0	9	39	1.35
48129097--48129441	91	3.7	91	86	7	512	31	10	10	47	1.72
48135265--48135445	40	4.6	39	80	9	188	24	20	28	26	1.99
48135314--48135478	79	2.1	79	82	6	192	25	20	27	26	1.99
48139682--48139783	42	2.4	43	81	6	118	29	25	17	27	1.98
48140093--48140136	22	2.0	22	82	8	54	38	22	0	38	1.55
48150736--48150833	49	2.0	49	95	0	178	33	11	23	31	1.90
48152896--48152971	36	2.1	36	100	0	152	28	5	14	51	1.64
48154627--48154685	23	2.6	23	83	0	64	20	20	11	47	1.81
48159508--48159703	99	2.0	99	95	0	356	8	29	22	39	1.84
48160411--48160460	13	3.2	16	70	18	52	48	0	0	52	1.00
48160403--48160460	29	2.0	30	83	10	75	44	1	1	51	1.21
48160544--48160600	15	3.5	15	71	17	51	49	1	1	47	1.22
48177470--48177561	27	3.4	28	80	5	91	19	7	14	58	1.59
48184837--48184866	4	7.5	4	92	0	51	23	3	0	73	0.98
48192617--48192651	18	2.0	18	88	5	54	5	2	8	82	0.91
48199286--48199314	14	2.0	15	93	6	51	20	41	10	27	1.85
48201244--48201296	17	3.1	17	80	2	61	16	32	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48202815--48202854	21	1.9	21	84	0	53	32	5	2	60	1.32
48205872--48205930	23	2.4	25	83	5	77	15	3	8	72	1.21
48205946--48206006	28	2.2	27	77	16	63	26	1	4	67	1.20
48205974--48206031	22	2.6	21	75	10	53	27	0	5	67	1.12
48205921--48206022	14	7.4	14	69	25	51	27	0	5	65	1.22
48206010--48206041	10	3.3	10	91	8	57	37	0	0	62	0.95
48205905--48206060	83	1.9	83	93	2	269	28	1	5	64	1.25
48212563--48212592	15	2.1	14	93	6	51	53	0	0	46	1.00
48213381--48213432	23	2.3	23	93	0	86	76	7	1	13	1.07
48213382--48213425	11	3.9	11	82	5	61	75	6	2	15	1.12
48216187--48216257	19	3.6	18	71	22	52	19	1	21	57	1.48
48229243--48229274	3	10.7	3	100	0	64	34	0	0	65	0.93
48236942--48236993	22	2.4	22	78	12	54	57	3	5	32	1.40
48237794--48237985	78	2.5	78	90	1	289	28	14	18	39	1.89
48238250--48238293	21	2.2	20	87	4	61	59	0	34	6	1.24
48257306--48257342	12	3.1	12	92	0	65	10	27	37	24	1.88
48264198--48264341	66	2.2	65	82	5	164	26	25	24	23	2.00
48268381--48268512	48	2.8	46	80	7	149	44	34	5	15	1.70
48268373--48268513	23	6.1	22	75	8	120	43	36	4	14	1.68
48273213--48273240	12	2.3	12	100	0	56	50	0	7	42	1.30
48274719--48274775	28	2.0	28	93	0	96	38	8	19	33	1.82
48285765--48285895	70	1.9	66	83	9	165	44	13	5	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48292228--48292332	43	2.5	42	83	7	131	36	17	20	26	1.94
48299896--48300011	45	2.6	45	84	2	144	23	14	26	35	1.93
48299992--48300095	41	2.5	43	82	6	133	26	19	26	26	1.99
48307855--48307972	45	2.6	45	87	0	164	22	16	27	33	1.96
48308828--48308884	26	2.2	26	96	0	105	31	0	26	42	1.56
48315860--48315892	17	2.0	17	94	5	59	36	15	0	48	1.45
48316173--48316496	46	7.1	47	92	1	448	20	24	13	41	1.88
48318332--48318379	11	4.2	11	79	10	51	62	2	0	35	1.07
48318614--48318672	30	1.9	31	86	3	84	30	18	1	49	1.58
48323736--48323908	93	1.9	93	91	0	283	27	30	21	20	1.98
48323729--48323908	46	3.9	47	78	10	190	28	30	21	20	1.98
48331942--48332135	27	7.2	26	87	3	244	19	17	21	42	1.89
48331942--48332135	81	2.4	81	87	5	284	19	17	21	42	1.89
48342999--48343278	48	5.9	47	73	9	219	28	19	28	24	1.98
48343009--48343278	96	2.8	96	80	6	282	28	20	28	23	1.99
48343245--48343321	38	2.0	38	100	0	154	35	20	20	23	1.96
48354547--48354571	5	5.0	5	100	0	50	80	0	0	20	0.72
48358532--48358593	31	1.9	33	83	6	83	46	1	1	50	1.20
48360252--48360316	19	3.3	18	75	21	60	47	0	0	52	1.00
48360252--48360316	9	6.7	9	76	15	58	47	0	0	52	1.00
48360658--48360758	46	2.2	46	100	0	202	38	13	13	33	1.85
48363936--48364049	48	2.4	47	79	4	140	37	21	11	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48364096--48364130	18	1.9	18	94	0	61	37	20	0	42	1.52
48368368--48368420	26	2.0	27	85	7	74	24	15	22	37	1.92
48369908--48369963	26	2.2	26	96	0	103	35	25	8	30	1.86
48377613--48377779	56	3.0	57	82	5	189	35	23	13	27	1.92
48379319--48379385	30	2.2	30	86	0	89	49	4	16	29	1.65
48381383--48381432	22	2.3	22	96	0	91	38	34	12	16	1.85
48393584--48393633	21	2.4	21	93	0	82	18	18	38	26	1.93
48397667--48397727	3	21.7	3	75	18	60	62	3	0	34	1.12
48397654--48397726	13	5.5	13	72	19	62	58	2	1	36	1.21
48397659--48397727	8	8.0	8	75	24	61	60	2	1	34	1.20
48406325--48406383	20	3.0	19	73	14	57	40	10	10	38	1.73
48407011--48407104	23	4.1	23	85	0	134	22	25	4	47	1.69
48411516--48411609	23	4.1	23	84	0	125	23	25	3	47	1.66
48420012--48420186	49	3.5	49	83	6	235	29	25	19	25	1.99
48419999--48420187	100	1.9	100	94	0	333	28	25	19	25	1.99
48428050--48428137	24	3.6	24	71	19	76	35	3	0	61	1.13
48428151--48428205	23	2.4	23	87	3	76	38	1	7	52	1.40
48428172--48428198	10	2.7	10	100	0	54	40	0	7	51	1.30
48428304--48428412	14	8.2	13	69	24	61	35	4	1	57	1.30
48428323--48428516	27	7.8	25	72	15	134	31	7	6	55	1.52
48428323--48428467	25	5.6	27	77	9	110	31	6	6	55	1.49
48428269--48428403	66	2.0	66	83	5	166	34	5	2	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48428836--48429076	48	5.0	48	83	0	329	26	28	17	26	1.98
48428799--48429076	96	2.9	96	95	0	484	27	28	16	27	1.97
48431271--48431302	13	2.5	13	94	0	55	9	15	0	75	1.05
48432616--48432686	35	2.0	35	89	5	108	38	18	9	33	1.84
48435969--48436002	3	11.3	3	100	0	68	67	0	0	32	0.91
48441310--48441368	19	3.1	19	72	18	59	62	0	1	35	1.05
48442071--48442115	22	2.1	22	88	12	67	46	8	0	44	1.34
48443557--48444305	266	2.8	262	83	3	907	28	16	16	39	1.90
48444363--48444393	7	4.6	7	96	4	55	48	35	0	16	1.46
48447643--48447701	24	2.5	23	86	10	84	66	3	11	18	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259