genome.fa.s9.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  209  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66211203--66211238	14	2.6	14	100	0	72	36	19	8	36	1.82
66212073--66212149	33	2.3	33	84	0	91	22	41	18	18	1.90
66216062--66216111	12	4.2	12	80	10	66	62	18	0	20	1.34
66216065--66216118	12	4.5	12	79	9	65	61	16	0	22	1.35
66216406--66216448	13	3.2	13	80	12	52	2	25	0	72	0.97
66216468--66216514	11	4.4	11	86	5	51	2	27	0	70	0.99
66217308--66217344	13	2.5	15	87	12	51	51	0	5	43	1.24
66217332--66217369	20	1.9	20	94	0	67	55	0	5	39	1.23
66224356--66224414	18	3.2	18	70	15	57	35	16	10	37	1.83
66224956--66225006	24	2.1	24	85	7	68	80	1	5	11	0.97
66229604--66229698	18	5.3	18	75	0	82	36	15	12	34	1.86
66229598--66229715	36	3.3	35	75	2	110	34	15	12	37	1.85
66230638--66230671	11	3.0	11	87	8	50	29	11	0	58	1.33
66231142--66231183	13	3.2	13	81	18	52	52	2	0	45	1.13
66233305--66233333	13	2.1	14	93	6	51	51	6	0	41	1.28
66243481--66243587	53	2.0	54	90	5	173	34	17	12	35	1.87
66246255--66246290	2	18.0	2	100	0	72	50	0	50	0	1.00
66264031--66264430	133	3.0	134	86	4	508	36	18	18	27	1.94
66273421--66273460	19	2.2	18	86	4	53	42	10	5	42	1.60
66277965--66278062	42	2.3	42	85	3	144	50	12	5	32	1.62
66278079--66278118	19	2.2	18	90	4	62	42	12	2	42	1.56
66289566--66289590	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66293658--66293899	121	2.0	121	95	1	441	38	5	11	43	1.64
66294387--66294434	3	16.0	3	100	0	96	0	33	33	33	1.58
66295935--66295969	16	2.2	16	94	0	61	48	20	11	20	1.79
66302372--66302423	23	2.3	22	75	21	54	9	23	1	65	1.32
66302417--66302455	18	2.2	18	85	0	51	12	23	2	61	1.43
66304814--66304841	4	7.0	4	100	0	56	75	0	0	25	0.81
66309230--66309269	20	2.0	20	90	0	62	50	2	32	15	1.57
66334031--66334078	12	4.3	12	75	20	59	47	12	0	39	1.41
66334043--66334081	20	2.0	20	100	0	78	43	10	0	46	1.37
66345938--66345975	17	2.3	17	86	4	51	47	2	2	47	1.30
66350982--66351019	17	2.2	18	85	4	51	31	26	5	36	1.79
66352681--66352865	92	2.0	93	97	1	354	15	11	16	55	1.69
66353728--66353772	21	2.1	21	95	0	81	24	24	15	35	1.94
66375539--66375569	2	15.5	2	100	0	62	0	48	0	51	1.00
66385859--66385891	14	2.4	14	95	5	59	36	27	0	36	1.57
66390380--66390423	22	2.0	22	100	0	88	45	22	13	18	1.84
66392124--66392155	13	2.5	13	89	0	55	9	15	21	53	1.70
66393885--66393912	5	5.6	5	100	0	56	82	0	0	17	0.68
66414340--66414480	42	3.4	42	78	3	122	18	21	14	45	1.85
66417014--66417074	31	2.0	31	100	0	122	29	22	3	44	1.69
66420430--66420475	16	2.8	17	80	12	60	52	0	47	0	1.00
66432079--66432294	44	5.0	44	71	10	153	29	19	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66432261--66432427	86	1.9	86	93	2	291	28	21	25	24	1.99
66432271--66432542	86	3.2	87	83	5	279	28	20	25	26	1.99
66434791--66434834	10	4.4	10	91	0	70	36	0	0	63	0.95
66434791--66434861	10	6.4	12	76	15	64	38	5	0	56	1.23
66434791--66434861	22	3.3	22	84	3	83	38	5	0	56	1.23
66434791--66434841	10	4.9	10	86	9	66	35	1	0	62	1.06
66436930--66436973	19	2.3	20	84	7	56	27	20	11	40	1.86
66439500--66439562	20	3.4	19	74	24	62	73	6	7	12	1.25
66441772--66442086	44	7.2	43	65	13	122	26	22	25	26	2.00
66441766--66442087	88	3.7	88	93	0	545	27	22	24	26	2.00
66442204--66442579	85	4.4	87	72	8	293	30	20	22	27	1.98
66442204--66442579	44	8.7	43	72	9	203	30	20	22	27	1.98
66442206--66442529	173	1.9	174	95	1	589	30	20	21	27	1.98
66442566--66442732	86	1.9	86	93	2	291	28	21	25	24	1.99
66442576--66442847	86	3.2	87	83	5	279	28	20	25	26	1.99
66445095--66445138	10	4.4	10	91	0	70	36	0	0	63	0.95
66445095--66445165	10	6.4	12	76	15	64	38	5	0	56	1.23
66445095--66445165	22	3.3	22	84	3	83	38	5	0	56	1.23
66445095--66445145	10	4.9	10	86	9	66	35	1	0	62	1.06
66447479--66447525	23	2.0	23	95	0	85	46	6	12	34	1.67
66449364--66449452	39	2.3	38	77	11	90	35	1	5	57	1.30
66453833--66453902	32	2.3	30	82	9	79	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66454391--66454429	19	2.1	19	100	0	78	15	30	15	38	1.88
66455284--66455339	28	2.0	28	82	6	69	55	0	0	44	0.99
66455305--66455345	20	2.0	21	85	4	57	58	0	0	41	0.98
66460791--66460821	4	7.5	4	92	7	53	22	0	0	77	0.77
66460791--66460821	13	2.5	13	94	5	55	22	0	0	77	0.77
66460831--66460879	24	2.1	23	85	14	66	44	0	2	53	1.12
66460892--66460980	23	4.1	21	72	22	78	37	2	0	60	1.09
66460967--66461017	21	2.4	21	81	15	61	37	0	1	60	1.08
66461217--66461242	4	6.5	4	100	0	52	23	0	0	76	0.78
66461282--66461324	19	2.1	22	87	12	65	39	0	0	60	0.97
66461250--66461322	23	3.4	22	75	7	69	43	0	4	52	1.20
66461323--66461392	23	3.1	22	80	10	79	42	0	1	55	1.08
66461740--66461772	14	2.3	15	94	5	59	57	0	0	42	0.98
66461747--66461863	31	3.6	31	72	20	96	58	0	1	38	1.14
66461830--66461883	21	2.6	21	88	5	74	61	1	1	35	1.18
66461938--66461977	4	9.5	4	84	10	53	75	0	2	22	0.93
66461941--66461977	13	2.8	13	95	0	65	75	0	2	21	0.92
66461932--66461977	17	2.6	17	83	10	58	73	0	2	23	0.94
66477961--66478013	25	2.1	25	100	0	106	49	15	3	32	1.62
66491588--66491633	24	1.9	24	82	8	58	56	4	15	23	1.57
66491773--66491879	53	2.0	53	100	0	214	48	9	8	33	1.65
66494198--66494230	14	2.3	15	94	5	59	45	0	3	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66494894--66494945	24	2.2	24	83	10	63	55	0	3	40	1.18
66497101--66497171	27	2.7	27	81	14	87	54	0	1	43	1.08
66497356--66497390	13	2.8	12	87	8	52	31	0	2	65	1.07
66497548--66497577	10	2.9	10	95	5	51	33	0	0	66	0.92
66497565--66497616	23	2.3	22	75	15	52	44	3	3	48	1.39
66497744--66497787	22	2.0	22	100	0	88	31	18	13	36	1.90
66503646--66503684	14	2.7	15	84	15	55	10	25	0	64	1.25
66503665--66503701	19	1.9	19	88	0	56	8	24	0	67	1.17
66509084--66509113	14	2.1	14	93	0	51	66	3	0	30	1.07
66516745--66517010	46	5.7	47	75	11	194	28	18	29	24	1.98
66523198--66523240	19	2.3	19	83	0	50	53	20	6	18	1.67
66524865--66524896	6	5.3	6	96	0	55	53	12	18	15	1.73
66525068--66525118	20	2.5	20	78	18	52	35	0	1	62	1.06
66525807--66525856	11	4.2	12	85	10	68	52	0	2	46	1.12
66533945--66534034	46	2.0	46	88	0	135	34	10	13	42	1.77
66534100--66534146	17	2.7	18	84	15	64	36	0	8	55	1.31
66553821--66553847	5	5.4	5	100	0	54	62	37	0	0	0.95
66561448--66561478	12	2.6	12	94	0	53	74	0	0	25	0.82
66562211--66562350	6	23.3	6	100	0	280	50	16	0	33	1.46
66569919--66569983	6	10.2	6	75	18	60	18	3	1	76	0.99
66569937--66569985	20	2.4	22	80	19	70	14	4	2	79	0.97
66569919--66570001	40	2.1	40	82	8	98	16	4	3	74	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66571075--66571104	10	3.0	10	90	0	51	76	0	13	10	1.01
66581764--66581790	6	4.5	6	100	0	54	14	0	0	85	0.61
66582864--66582930	34	2.0	34	100	0	134	17	26	7	47	1.74
66585155--66585201	25	2.0	25	83	8	62	27	14	4	53	1.60
66585344--66585373	13	2.3	13	94	0	51	36	26	0	36	1.57
66585462--66585583	46	2.7	46	89	2	183	18	23	15	42	1.88
66585556--66585598	14	2.9	15	89	6	54	25	27	13	32	1.94
66585564--66585598	14	2.5	14	95	0	61	25	28	11	34	1.91
66585518--66585644	60	2.1	60	89	0	191	22	24	14	39	1.91
66585578--66585776	38	4.7	46	79	18	250	25	24	14	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259