genome.fa.s9.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  158  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51648843--51648895	19	2.8	18	76	18	63	18	15	15	50	1.77
51648823--51648895	38	1.9	38	88	0	110	20	17	15	46	1.84
51648843--51648918	24	3.3	23	72	22	63	19	15	13	51	1.76
51651538--51651641	37	2.8	37	84	8	140	26	9	47	16	1.77
51652447--51652478	15	2.1	15	94	0	55	28	6	0	65	1.16
51652555--51652593	14	2.7	15	88	4	53	51	35	0	12	1.40
51654434--51654558	62	2.0	62	85	0	169	23	4	16	56	1.59
51654689--51654735	23	2.0	23	100	0	94	36	8	4	51	1.52
51657844--51657951	28	3.9	28	80	7	112	29	12	21	36	1.91
51657841--51657965	28	4.5	28	78	7	110	28	15	21	34	1.94
51660045--51660114	27	2.5	28	81	6	81	38	1	1	58	1.16
51660045--51660114	28	2.5	28	79	6	72	38	1	1	58	1.16
51661588--51661633	23	1.9	25	86	8	69	34	4	8	52	1.52
51671747--51671897	27	5.6	27	89	1	212	30	28	13	27	1.94
51671747--51671897	55	2.8	54	88	1	221	30	28	13	27	1.94
51671747--51671897	82	1.9	81	87	1	221	30	28	13	27	1.94
51676211--51676311	43	2.4	43	85	5	134	42	10	7	38	1.69
51678033--51678128	17	5.2	18	68	28	60	53	5	3	38	1.39
51678002--51678146	68	2.1	70	80	7	161	54	4	3	37	1.39
51684089--51684133	18	2.5	18	85	7	65	26	4	4	64	1.32
51686392--51686435	21	2.2	20	84	12	54	36	4	2	56	1.32
51688536--51688579	17	2.4	18	81	7	54	27	4	2	65	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51688551--51688602	21	2.4	21	81	18	63	25	3	1	69	1.16
51688905--51688942	18	2.1	18	95	0	67	23	5	2	68	1.23
51688915--51688954	15	2.7	14	85	11	53	27	5	0	67	1.11
51688934--51688962	12	2.4	12	100	0	58	24	6	0	68	1.13
51692169--51692220	24	2.2	24	82	0	59	53	7	3	34	1.48
51718743--51718838	49	2.0	49	85	4	131	31	29	17	21	1.96
51726923--51726985	32	2.0	32	87	0	90	30	23	15	30	1.96
51727320--51727410	27	3.4	26	86	3	119	23	21	18	36	1.95
51746292--51746329	20	1.9	20	88	0	58	10	36	31	21	1.87
51754368--51754416	20	2.5	20	96	3	91	55	6	6	32	1.49
51754368--51754416	10	5.0	10	80	5	64	55	6	6	32	1.49
51756772--51756842	26	2.7	25	80	4	61	70	4	22	2	1.18
51756822--51756869	16	3.1	16	93	3	80	64	6	27	2	1.28
51756781--51756852	26	2.8	26	82	0	81	66	4	26	2	1.23
51757073--51757127	27	2.0	27	100	0	110	45	3	7	43	1.49
51758734--51758770	19	2.0	19	89	5	58	56	2	0	40	1.13
51758767--51758799	17	2.0	16	94	5	57	45	0	0	54	0.99
51758761--51758800	19	2.2	19	86	8	57	50	0	0	50	1.00
51758761--51758801	18	2.2	19	86	4	57	51	0	0	48	1.00
51758825--51758850	10	2.6	10	100	0	52	46	7	0	46	1.31
51759444--51759483	21	1.9	21	85	10	55	42	7	7	42	1.61
51759580--51759621	16	2.6	16	81	7	50	35	2	2	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51768089--51768164	38	2.0	38	100	0	152	31	13	23	31	1.93
51769351--51769494	40	3.6	40	84	4	182	26	24	25	23	2.00
51780558--51780820	40	6.6	40	87	3	201	24	20	28	26	1.99
51780558--51780820	80	3.3	80	84	2	307	24	20	28	26	1.99
51780611--51780855	80	3.1	80	84	2	244	24	20	28	26	1.99
51788496--51788718	40	5.6	40	86	3	236	24	21	28	26	1.99
51788571--51788753	79	2.3	80	83	1	226	25	20	28	25	1.99
51806410--51806619	40	5.3	40	91	0	260	23	20	28	27	1.99
51806357--51806619	80	3.3	80	83	2	298	24	20	28	26	1.99
51810139--51810197	23	2.6	23	94	0	109	55	6	3	33	1.43
51810139--51810198	11	5.3	11	72	7	57	55	6	3	35	1.43
51818960--51819126	84	2.0	83	90	1	262	35	22	18	23	1.95
51825336--51825368	14	2.4	14	90	10	50	60	0	0	39	0.97
51826283--51826314	16	2.0	16	100	0	64	37	31	6	25	1.81
51836253--51836281	14	2.0	15	93	6	51	3	0	20	75	0.94
51837054--51837133	21	3.8	21	72	9	72	15	37	25	22	1.93
51837054--51837141	43	2.0	43	86	0	122	14	39	22	22	1.91
51840052--51840089	18	2.1	18	95	0	67	31	0	13	55	1.38
51844432--51844515	31	2.7	31	96	1	152	27	27	17	27	1.98
51844539--51844672	42	3.2	42	98	0	259	33	20	14	31	1.93
51844820--51844889	25	2.8	25	93	4	115	25	22	25	25	2.00
51845699--51845763	27	2.4	27	79	5	69	21	23	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51845721--51845772	27	1.9	28	84	7	72	17	21	23	38	1.93
51845817--51845949	27	4.9	27	73	15	96	32	6	19	42	1.76
51845822--51845913	27	3.4	27	79	11	98	31	6	19	42	1.77
51845794--51846002	54	3.9	54	76	7	156	31	8	20	40	1.82
51845797--51846002	109	1.9	108	80	3	243	30	7	20	40	1.81
51845878--51846002	27	4.7	26	82	6	135	28	6	21	43	1.77
51846034--51846217	27	6.5	27	76	11	145	39	8	23	28	1.84
51846034--51846239	54	3.7	54	78	14	193	38	9	23	28	1.86
51846078--51846146	35	2.0	35	91	5	113	34	8	20	36	1.83
51846052--51846227	54	3.0	61	79	15	208	38	7	22	31	1.83
51846112--51846239	27	4.7	27	88	0	184	38	9	24	28	1.86
51855432--51855480	25	2.0	25	95	0	89	26	24	16	32	1.96
51856535--51856657	64	1.9	63	93	1	210	27	26	19	26	1.99
51857047--51857132	34	2.6	33	87	5	113	43	20	3	32	1.69
51873335--51873397	28	2.2	28	100	0	126	23	26	26	22	2.00
51878763--51878829	5	13.4	5	96	0	125	41	0	0	58	0.98
51878834--51878863	15	1.9	16	93	6	53	46	3	13	36	1.60
51879342--51879394	3	17.7	3	92	0	88	33	1	1	62	1.17
51880314--51880394	21	3.8	21	75	1	90	16	16	23	44	1.86
51880667--51880758	40	2.3	40	79	3	96	32	22	19	25	1.97
51880730--51880908	75	2.4	75	86	0	223	32	19	18	29	1.96
51881257--51881295	14	2.8	14	88	0	60	25	0	25	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51881291--51881351	22	2.8	20	80	11	68	26	3	26	44	1.69
51883645--51883740	39	2.5	39	82	0	102	21	25	32	20	1.98
51891575--51891675	38	2.7	37	81	3	96	23	22	30	22	1.99
51900761--51900814	15	3.7	15	73	11	58	22	0	35	42	1.54
51900977--51901007	16	1.9	16	93	0	53	45	9	3	41	1.53
51900983--51901039	25	2.2	25	81	3	69	38	10	3	47	1.55
51901315--51901353	17	2.3	17	81	0	51	43	25	0	30	1.55
51903335--51903374	17	2.3	18	91	4	64	30	12	27	30	1.93
51909449--51909707	73	3.5	73	98	0	491	28	6	24	40	1.79
51913947--51914205	73	3.5	73	96	0	473	28	6	23	40	1.80
51916223--51916288	34	1.9	34	84	9	89	36	4	4	54	1.41
51916223--51916291	35	2.0	35	83	11	88	36	4	4	55	1.40
51916425--51916656	43	5.4	43	87	2	333	25	18	27	28	1.98
51919606--51919802	85	2.3	85	84	3	252	25	18	26	29	1.98
51919645--51919829	85	2.2	84	81	5	203	27	17	23	31	1.97
51927006--51927158	42	3.6	42	79	4	155	26	20	25	28	1.99
51927004--51927158	84	1.8	85	91	1	258	25	20	25	28	1.99
51931776--51931830	29	2.0	28	82	7	67	50	0	1	47	1.11
51932901--51932947	14	3.4	14	79	8	51	31	2	4	61	1.27
51933024--51933058	18	1.9	18	94	0	61	28	2	0	68	1.04
51932940--51933226	139	2.1	140	82	5	350	42	11	5	40	1.64
51936355--51936605	126	2.0	126	88	1	369	31	13	14	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51937370--51937408	18	2.2	18	90	0	60	48	10	10	30	1.70
51938572--51938628	25	2.3	25	100	0	114	59	0	3	36	1.14
51940118--51940161	23	1.9	23	81	9	54	31	4	9	54	1.52
51942463--51942592	49	2.7	50	79	8	142	30	20	26	22	1.98
51946346--51946416	35	2.0	35	94	0	124	36	19	9	33	1.85
51951583--51951705	49	2.5	49	84	6	144	25	26	20	27	1.99
51951766--51951891	46	2.7	46	81	6	137	23	27	20	27	1.99
51954234--51954408	46	3.8	46	78	13	178	28	28	21	21	1.99
51954243--51954413	93	1.8	93	91	0	279	27	28	21	22	1.99
51963580--51963628	23	2.2	22	85	3	62	6	20	2	71	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259