Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  118  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38362897--38362959
21
3.0
21
88
2
90
30
3
33
33
1.74
38363095--38363156
10
5.9
10
74
10
52
33
32
3
30
1.74
38363095--38363157
21
3.0
21
88
2
90
33
33
3
30
1.74
38367960--38368021
10
5.9
10
74
10
52
33
32
3
30
1.74
38367960--38368022
21
3.0
21
88
2
90
33
33
3
30
1.74
38369612--38369636
13
1.9
13
100
0
50
36
16
32
16
1.90
38370142--38370179
10
3.8
10
83
13
51
21
18
31
28
1.97
38370119--38370179
20
3.0
20
83
9
63
27
14
27
29
1.95
38370143--38370180
20
1.9
20
94
0
67
18
18
34
28
1.95
38372238--38372334
30
3.2
30
75
2
106
28
15
26
28
1.96
38374457--38374488
12
2.8
12
95
4
57
6
15
0
78
0.95
38374570--38374619
6
8.2
6
81
16
50
2
20
2
76
0.99
38374559--38374629
37
1.9
37
86
11
101
4
18
1
76
1.03
38375518--38375554
11
3.2
12
85
14
51
13
5
8
72
1.24
38375634--38375681
12
3.8
12
82
15
60
8
6
4
81
0.98
38377262--38377358
30
3.2
30
75
2
106
28
15
26
28
1.96
38382288--38382335
15
3.3
14
80
8
60
4
18
0
77
0.93
38382288--38382346
21
2.8
21
87
5
75
6
22
0
71
1.09
38389726--38389772
20
2.3
20
85
0
67
21
12
36
29
1.91
38392603--38392637
9
3.8
9
88
3
52
2
8
2
85
0.79
38394170--38394216
20
2.3
20
85
0
67
21
12
36
29
1.91
38397045--38397080
10
3.8
9
89
10
54
2
8
2
86
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38397036--38397099
22
3.0
21
81
6
67
4
14
3
78
1.04
38398606--38398652
20
2.3
20
85
0
67
21
12
36
29
1.91
38401476--38401514
10
3.8
10
89
3
60
2
10
2
84
0.81
38401470--38401530
20
2.8
21
85
14
79
4
14
3
77
1.07
38403041--38403087
20
2.3
20
85
0
67
21
12
36
29
1.91
38407098--38407194
30
3.2
30
75
2
106
28
15
26
28
1.96
38409225--38409274
12
4.0
12
94
5
82
72
2
10
16
1.21
38410433--38410466
18
1.9
18
88
5
52
52
2
35
8
1.47
38415372--38415408
12
2.9
13
88
8
58
78
2
5
13
1.03
38420081--38420127
20
2.3
20
81
0
58
29
34
12
23
1.92
38421643--38421691
24
2.0
25
84
4
64
79
2
14
4
0.97
38421627--38421681
16
3.4
16
74
18
51
78
3
14
3
1.03
38422709--38422814
48
2.2
47
85
9
135
59
1
24
14
1.45
38424485--38424531
20
2.3
20
81
0
58
29
34
12
23
1.92
38428561--38428620
29
2.1
29
93
0
102
41
30
0
28
1.56
38428567--38428614
15
3.3
15
73
5
53
43
27
0
29
1.55
38429944--38429993
18
2.8
18
87
0
73
58
0
28
14
1.37
38429941--38430018
24
3.2
24
79
0
93
58
0
28
12
1.34
38430879--38430975
30
3.2
30
75
2
106
28
26
15
28
1.96
38431988--38432017
7
4.3
7
100
0
60
16
13
16
53
1.73
38432687--38432725
11
3.5
11
89
6
60
71
5
0
23
1.05
38432693--38432723
12
2.6
12
100
0
62
80
6
0
12
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38433631--38433701
37
1.9
37
86
11
101
76
2
18
2
1.04
38433641--38433690
6
8.2
6
83
14
50
76
2
20
2
0.99
38433751--38433781
12
2.6
12
100
0
62
45
12
16
25
1.83
38433901--38433931
12
2.6
12
100
0
62
45
12
16
25
1.83
38433675--38433990
150
2.1
150
99
0
623
56
6
24
13
1.61
38436112--38436208
30
3.2
30
75
2
106
28
26
15
28
1.96
38437221--38437250
7
4.3
7
100
0
60
16
13
16
53
1.73
38438063--38438106
21
2.0
22
86
4
63
34
34
6
25
1.82
38440852--38440891
11
3.6
11
96
0
71
77
5
7
10
1.11
38440852--38440904
11
4.6
11
88
6
70
75
3
7
13
1.15
38449206--38449250
14
3.3
14
78
6
56
35
0
15
48
1.45
38451714--38451810
30
3.2
30
73
2
97
28
15
27
27
1.96
38452026--38452085
29
2.1
29
93
0
102
41
30
0
28
1.56
38452032--38452079
15
3.3
15
73
5
53
43
27
0
29
1.55
38458288--38458312
12
2.1
12
100
0
50
52
16
0
32
1.44
38460498--38460572
11
6.1
12
73
15
55
70
6
8
14
1.31
38460508--38460620
28
4.0
28
75
10
88
68
7
11
13
1.39
38460498--38460583
40
2.2
38
78
13
95
72
6
8
12
1.28
38461636--38461669
18
1.9
18
88
5
52
52
2
35
8
1.47
38464252--38464289
10
3.8
10
83
13
51
28
31
18
21
1.97
38464251--38464288
20
1.9
20
94
0
67
28
34
18
18
1.95
38466021--38466059
13
2.9
13
92
3
60
74
2
7
15
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38470751--38470782
11
2.6
13
90
9
50
75
3
9
12
1.16
38471845--38471883
18
2.2
18
85
0
51
71
5
15
7
1.26
38473579--38473616
10
3.8
10
83
13
51
28
31
18
21
1.97
38473578--38473615
20
1.9
20
94
0
67
28
34
18
18
1.95
38475835--38475880
20
2.3
20
84
0
56
23
19
17
39
1.92
38475827--38475900
30
2.5
30
84
8
80
22
20
18
37
1.94
38477482--38477546
13
4.7
13
77
18
69
75
6
4
13
1.15
38477483--38477558
12
5.6
13
73
22
59
75
3
6
14
1.16
38481791--38481850
22
2.7
23
73
19
63
66
6
0
26
1.16
38481800--38481833
4
8.0
4
90
9
50
73
2
0
23
0.97
38483067--38483091
13
1.9
13
100
0
50
36
16
32
16
1.90
38483310--38483334
13
1.9
13
100
0
50
36
16
32
16
1.90
38482996--38483480
243
2.0
243
100
0
970
30
21
18
28
1.97
38483709--38483949
120
2.0
120
100
0
482
49
16
7
26
1.72
38485799--38485832
4
8.0
4
90
9
50
73
2
0
23
0.97
38487184--38487236
23
2.4
22
76
20
56
9
18
1
69
1.25
38489368--38489464
30
3.2
30
75
2
106
28
15
26
28
1.96
38491643--38491673
12
2.6
12
100
0
62
25
16
12
45
1.83
38491733--38491782
6
8.2
6
81
16
50
2
20
2
76
0.99
38491723--38491782
16
3.8
16
75
14
54
3
18
1
76
1.00
38492707--38492764
12
5.2
11
79
12
57
8
12
6
72
1.28
38492733--38492771
11
3.2
13
86
13
57
12
5
7
74
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38494475--38494571
30
3.2
30
75
2
106
28
15
26
28
1.96
38495664--38498321
987
2.7
987
99
0
5264
40
16
17
25
1.90
38503801--38503891
18
5.5
17
70
23
61
13
23
1
62
1.37
38504872--38504929
30
1.9
29
83
13
73
5
17
5
72
1.22
38504926--38504983
13
4.5
13
78
17
59
17
5
5
72
1.22
38505516--38505551
16
2.2
16
100
0
72
38
16
0
44
1.48
38509927--38509980
24
2.2
25
78
15
60
11
22
3
62
1.43
38512231--38512257
14
1.9
14
100
0
54
14
7
7
70
1.32
38516073--38516132
12
5.0
12
93
0
93
15
8
3
73
1.20
38518075--38518160
18
4.6
18
71
7
64
72
3
17
6
1.22
38518071--38518160
6
14.7
6
70
12
58
72
3
17
6
1.21
38518121--38518158
13
2.8
13
82
17
51
71
0
18
10
1.14
38520021--38520066
20
2.3
20
84
0
56
23
19
17
39
1.92
38520013--38520086
30
2.5
30
84
8
80
22
20
18
37
1.94
38523502--38523544
21
2.0
21
90
0
68
76
0
18
4
0.95
38523594--38523627
15
2.3
15
89
0
50
73
0
23
2
0.97
38528667--38528707
17
2.4
18
80
8
50
14
24
4
56
1.58
38530959--38530997
10
3.7
10
89
6
51
12
7
2
76
1.09
38530945--38530987
12
3.5
12
96
3
77
16
6
0
76
0.99
38532285--38532309
12
2.1
12
100
0
50
32
0
16
52
1.44
38532522--38532569
13
3.5
13
75
10
51
14
8
2
75
1.13
38535323--38535350
4
7.0
4
100
0
56
75
0
0
25
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38536754--38536814
10
6.1
10
78
12
63
34
13
22
29
1.92
38536755--38536815
20
3.0
20
83
9
79
34
13
24
27
1.93
38538887--38538921
18
1.9
18
88
11
54
22
20
0
57
1.41
38539851--38539907
12
4.5
12
78
18
62
15
5
5
73
1.19
38541252--38541312
10
6.1
10
78
12
63
34
13
22
29
1.92
38541253--38541313
20
3.0
20
83
9
79
34
13
24
27
1.93
38548508--38548557
18
2.8
18
87
0
73
14
28
0
58
1.37
38553001--38553048
15
3.3
15
73
5
53
29
0
27
43
1.55
38552995--38553038
14
3.1
14
74
6
52
27
0
34
38
1.57
38552995--38553054
29
2.1
29
93
0
102
28
0
30
41
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259