Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  253  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79388449--79388520
34
2.1
33
82
10
83
34
11
1
52
1.45
79388674--79388782
53
2.1
49
83
8
137
32
6
2
58
1.37
79388693--79388895
83
2.4
84
75
15
222
33
4
2
58
1.33
79388770--79388808
19
2.0
19
85
14
53
30
5
2
61
1.31
79388836--79388895
31
1.9
31
93
0
102
38
5
0
56
1.21
79389145--79389192
21
2.2
23
81
7
55
37
4
0
58
1.18
79389601--79389650
19
2.7
18
82
11
66
34
0
2
64
1.05
79389659--79389698
19
2.2
18
86
4
53
42
0
2
55
1.13
79390019--79390059
12
3.4
12
96
0
73
14
24
9
51
1.72
79401595--79401633
5
7.6
5
82
5
51
79
2
0
17
0.84
79407247--79407280
16
2.1
16
88
0
50
29
0
0
70
0.87
79407524--79407557
17
2.0
17
94
0
59
23
2
0
73
0.97
79421957--79422033
33
2.4
32
82
4
91
46
16
9
27
1.77
79422251--79422303
26
2.0
26
85
7
72
35
5
3
54
1.42
79422748--79422793
24
2.0
23
82
4
56
30
6
0
63
1.20
79427091--79427148
30
1.9
30
96
0
107
44
17
8
29
1.78
79435284--79435322
20
1.9
21
89
5
62
53
0
10
35
1.35
79441086--79441123
20
1.9
20
84
10
51
42
13
0
44
1.43
79441682--79441745
31
2.1
30
82
8
76
48
1
1
48
1.20
79441714--79441757
22
2.0
23
82
13
56
50
0
2
47
1.13
79448383--79448408
6
4.3
6
100
0
52
65
0
0
34
0.93
79449379--79449434
29
1.9
29
85
0
76
46
12
1
39
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79453093--79453133
21
2.0
21
90
0
64
19
29
21
29
1.98
79467636--79467671
16
2.2
16
100
0
72
27
0
5
66
1.13
79467709--79467779
34
2.1
35
97
2
135
28
12
35
23
1.92
79471826--79471854
6
4.8
6
100
0
58
86
0
13
0
0.58
79479093--79479148
23
2.4
24
88
8
80
33
1
1
62
1.16
79499030--79499058
10
2.9
10
100
0
58
0
0
58
41
0.98
79510657--79510725
29
2.3
31
82
5
88
43
8
5
42
1.59
79515244--79515293
3
16.7
3
100
0
100
34
0
0
66
0.92
79519425--79519467
19
2.1
21
87
12
63
46
0
0
53
1.00
79536000--79536042
18
2.4
18
84
11
61
51
6
0
41
1.29
79537410--79537478
16
4.2
16
92
3
120
24
1
37
36
1.65
79537410--79537478
33
2.1
32
94
2
120
24
1
37
36
1.65
79537459--79537549
45
2.0
45
85
2
121
27
6
28
37
1.82
79537715--79537749
18
2.0
17
88
5
52
54
0
0
45
0.99
79537698--79537960
120
2.2
120
98
0
508
47
6
1
44
1.38
79542526--79542596
30
2.4
30
79
11
83
50
2
4
42
1.36
79542535--79542596
15
4.2
15
80
10
65
53
3
3
40
1.33
79543491--79543537
19
2.4
21
83
16
66
34
10
2
53
1.48
79553086--79553128
17
2.5
18
81
11
54
46
2
0
51
1.13
79553681--79553730
17
2.7
20
78
18
70
10
0
44
46
1.37
79558320--79558369
17
2.7
20
78
18
70
10
0
44
46
1.37
79561442--79561481
20
2.0
20
85
0
53
25
7
25
42
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79562368--79562404
18
2.1
18
100
0
74
40
21
16
21
1.91
79564108--79564146
17
2.2
18
90
4
62
23
12
15
48
1.79
79575215--79575269
28
2.0
28
82
10
69
36
12
1
49
1.52
79579346--79579384
14
2.7
14
80
4
51
51
7
10
30
1.64
79597576--79597749
69
2.5
70
89
1
262
37
20
12
29
1.88
79600126--79600326
81
2.4
82
90
4
307
31
12
14
40
1.84
79605088--79605144
21
2.9
21
71
12
66
57
0
0
42
0.98
79613143--79613192
9
4.9
10
77
18
50
36
2
2
60
1.20
79614781--79614826
25
2.0
25
83
12
62
36
8
26
28
1.86
79616316--79616393
39
1.9
38
82
10
93
55
1
10
33
1.42
79621500--79621549
26
1.9
26
87
0
73
16
12
10
62
1.55
79623277--79623317
16
2.6
16
88
7
57
34
48
12
4
1.62
79623498--79623540
22
1.9
23
90
4
70
65
0
2
32
1.06
79623505--79623547
19
2.3
18
84
7
59
65
2
2
30
1.18
79623498--79623555
22
2.5
22
83
8
62
65
1
3
29
1.19
79624398--79624436
15
2.4
16
87
8
53
35
0
0
64
0.94
79624849--79624907
21
2.8
22
85
7
70
23
0
6
69
1.12
79624878--79624937
26
2.4
24
83
8
75
28
0
3
68
1.05
79626217--79626336
59
2.0
59
98
0
231
25
8
11
54
1.64
79633348--79633388
16
2.5
17
88
4
57
31
0
2
65
1.05
79635029--79635072
15
3.1
14
81
9
54
68
2
0
29
1.02
79635029--79635088
15
4.1
14
77
12
50
68
1
0
30
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79635036--79635098
26
2.3
27
81
13
76
66
4
0
28
1.12
79635195--79635252
26
2.2
25
82
11
64
58
3
6
31
1.41
79635201--79635252
26
1.9
27
84
7
70
59
3
7
28
1.43
79635967--79636024
18
3.4
17
77
13
57
58
5
8
27
1.49
79639847--79639880
18
1.9
18
94
5
61
64
0
0
35
0.94
79647357--79647394
20
1.9
20
89
10
60
39
0
10
50
1.37
79648133--79648163
6
5.2
6
100
0
62
19
16
48
16
1.81
79650922--79650978
27
2.2
27
87
6
82
61
7
3
28
1.39
79650931--79651014
26
3.2
25
76
8
80
61
7
4
26
1.42
79651247--79651282
19
2.0
17
89
10
54
44
2
2
50
1.31
79651330--79651386
26
2.2
26
87
3
80
61
3
7
28
1.39
79653935--79654027
30
3.1
31
65
22
88
38
8
6
46
1.60
79653910--79654026
60
2.0
60
100
0
234
40
7
5
47
1.54
79654546--79654586
17
2.5
16
84
7
55
26
2
2
68
1.15
79655437--79655467
11
2.7
11
95
5
53
70
0
0
29
0.87
79658688--79658737
20
2.5
20
86
3
64
52
8
14
26
1.68
79660321--79660357
17
2.1
19
85
10
51
37
0
0
62
0.96
79671671--79671731
22
2.8
22
80
2
61
68
6
6
18
1.33
79671823--79672021
3
65.7
3
70
11
84
54
2
10
32
1.47
79671945--79671980
16
2.3
15
90
4
54
52
0
19
27
1.46
79672086--79672128
16
2.8
15
86
6
59
62
0
6
30
1.21
79672339--79672374
3
11.7
3
94
5
63
63
0
0
36
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79672862--79672916
25
2.1
27
86
6
78
43
18
3
34
1.67
79673365--79673402
17
2.4
17
82
8
53
47
39
2
10
1.52
79682367--79682646
48
5.8
48
80
4
271
27
16
28
28
1.97
79682408--79682682
144
1.9
144
81
3
329
28
15
26
29
1.96
79691356--79691465
45
2.6
41
77
9
107
31
5
29
33
1.80
79691627--79691814
61
3.1
61
70
14
199
48
6
1
42
1.39
79691711--79691769
15
4.0
15
78
14
61
52
1
0
45
1.10
79691595--79691844
120
2.1
120
96
0
464
49
6
2
42
1.39
79691688--79691772
43
2.0
43
82
8
104
54
2
1
42
1.21
79691740--79691979
103
2.3
103
87
1
338
52
4
1
41
1.30
79691838--79691983
18
8.5
18
63
20
62
54
2
0
41
1.19
79691853--79691939
37
2.3
37
81
13
97
51
4
1
42
1.29
79692891--79692946
22
2.6
22
78
15
55
39
0
1
58
1.08
79692901--79692947
22
2.2
22
85
11
62
34
0
2
63
1.06
79693343--79693403
28
2.1
30
88
11
92
26
8
1
63
1.31
79697565--79697635
26
2.7
27
80
8
76
61
1
4
32
1.23
79697761--79697799
19
2.1
18
85
4
51
64
0
5
30
1.15
79703905--79703944
6
6.7
6
100
0
80
15
35
17
32
1.91
79706129--79706195
26
2.5
28
82
4
75
47
29
4
17
1.67
79706216--79706258
23
1.9
23
85
4
61
58
2
6
32
1.38
79714730--79714761
6
5.3
6
96
0
55
43
15
21
18
1.87
79716673--79716978
109
2.8
109
87
1
429
32
17
16
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79717814--79717853
20
2.0
20
85
9
55
2
17
25
55
1.55
79718719--79718758
20
2.0
20
85
9
55
2
17
25
55
1.55
79723292--79723399
26
4.2
26
91
0
180
37
24
6
32
1.81
79724832--79724868
3
12.0
3
88
5
56
67
0
2
29
1.04
79732206--79732248
19
2.3
19
79
0
50
34
0
0
65
0.93
79751149--79751191
18
2.4
18
88
7
61
55
2
0
41
1.12
79754279--79754333
5
11.0
5
100
0
110
20
0
0
80
0.72
79759526--79759565
13
3.1
13
81
0
53
40
7
5
47
1.54
79769902--79769957
27
2.1
27
100
0
112
28
10
3
57
1.49
79776326--79776367
15
2.8
15
85
0
57
57
7
2
33
1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259