genome.fa.s9.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  141  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45800619--45800756	73	1.9	73	90	0	222	41	13	16	28	1.86
45804881--45804958	39	1.9	42	84	7	108	60	5	26	7	1.45
45808041--45808927	444	2.0	444	99	0	1747	31	13	20	34	1.91
45813137--45813174	20	1.9	19	89	5	58	15	7	2	73	1.17
45826670--45826765	45	2.1	45	82	3	113	22	19	13	43	1.86
45826776--45826847	37	1.9	37	88	0	108	25	18	13	43	1.86
45828050--45828202	76	2.0	77	97	1	290	50	18	11	19	1.77
45849183--45849276	46	2.0	46	100	0	188	29	23	20	26	1.99
45849857--45849895	12	3.2	12	88	3	51	23	0	5	71	1.05
45854012--45854186	60	2.9	58	81	10	185	24	20	29	26	1.99
45854692--45854727	14	2.6	14	90	0	54	27	22	8	41	1.82
45861652--45861707	22	2.6	20	78	13	58	33	17	14	33	1.90
45871282--45871328	24	2.0	24	86	0	67	17	10	48	23	1.77
45871350--45871396	24	2.0	24	87	8	69	34	14	12	38	1.85
45876406--45876434	13	2.2	13	100	0	58	37	17	6	37	1.76
45876861--45876937	20	3.8	20	71	6	66	36	19	31	12	1.90
45879473--45879540	34	2.0	35	94	2	120	27	35	7	29	1.84
45881020--45881044	13	1.9	13	100	0	50	48	16	4	32	1.64
45881067--45881299	9	25.3	9	68	20	74	56	15	2	24	1.52
45881067--45881271	13	15.2	13	68	25	63	56	16	2	24	1.52
45881073--45881225	24	6.7	23	71	21	92	58	15	1	24	1.48
45881117--45881181	19	3.4	20	81	14	75	58	9	3	29	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45881084--45881280	31	6.0	31	70	19	121	56	15	2	24	1.52
45881073--45881371	69	4.4	68	84	3	345	56	15	2	26	1.51
45881095--45881380	15	20.3	15	67	23	74	56	14	2	26	1.52
45881073--45881371	137	2.2	136	84	3	379	56	15	2	26	1.51
45881413--45881571	13	12.4	13	68	17	82	51	21	6	20	1.69
45881405--45881526	54	2.3	54	86	2	174	50	22	4	22	1.65
45881672--45881736	30	2.2	30	86	5	87	61	6	9	23	1.48
45892258--45892306	24	2.0	24	92	0	80	36	20	10	32	1.86
45903190--45903457	46	5.7	47	81	9	309	29	18	28	23	1.98
45903190--45903459	93	2.9	93	87	4	359	29	18	28	23	1.98
45903193--45903457	139	1.9	142	88	6	407	29	18	28	23	1.98
45908134--45908193	30	2.0	30	100	0	120	50	0	30	20	1.49
45916341--45916437	40	2.5	38	81	8	117	18	21	27	31	1.97
45922950--45922977	14	2.0	14	100	0	56	71	0	28	0	0.86
45925796--45925972	79	2.2	79	86	5	234	24	22	27	24	2.00
45925796--45925939	40	3.6	40	93	3	238	22	23	28	25	1.99
45933820--45934004	40	4.7	40	89	7	279	24	23	26	25	2.00
45933820--45934004	79	2.3	79	89	5	286	24	23	26	25	2.00
45940040--45940096	29	1.9	30	82	3	71	24	22	3	49	1.66
45944430--45944497	30	2.3	29	82	10	75	30	16	4	48	1.65
45947882--45948026	40	3.6	40	95	0	263	22	23	28	25	1.99
45948285--45948328	22	2.0	21	83	16	54	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45958760--45958819	27	2.3	27	85	2	77	21	23	20	35	1.96
45973032--45973228	99	2.0	99	93	0	340	41	18	13	26	1.88
45983007--45983031	9	2.8	9	100	0	50	8	0	32	60	1.26
45984484--45984527	14	2.9	15	80	13	54	31	6	22	38	1.81
45988618--45988772	43	3.6	41	77	10	134	25	18	27	28	1.98
45988613--45988776	86	1.9	86	83	2	213	25	18	27	29	1.98
45995185--45995250	9	7.1	9	77	6	60	42	0	1	56	1.08
45995161--45995250	10	9.0	10	70	12	53	44	0	2	53	1.13
45995185--45995235	17	2.9	17	79	5	57	39	0	1	58	1.09
46009630--46009745	37	3.1	37	94	0	196	25	31	18	24	1.98
46009864--46010345	47	10.1	47	92	3	793	29	30	8	31	1.87
46009864--46010345	96	5.0	96	96	1	828	29	30	8	31	1.87
46009864--46010345	143	3.4	143	93	2	815	29	30	8	31	1.87
46013225--46013395	45	3.7	45	83	11	197	23	31	19	25	1.98
46025076--46025126	27	1.9	26	84	4	66	17	23	19	39	1.92
46038463--46038504	22	1.9	22	85	9	59	26	11	33	28	1.92
46047271--46047386	46	2.5	44	87	8	153	28	19	27	24	1.99
46054790--46054962	93	1.9	93	92	0	292	27	28	21	21	1.99
46054783--46054958	46	3.8	46	76	12	180	28	28	21	21	1.98
46057841--46058065	40	5.7	40	86	5	296	24	22	28	25	2.00
46057841--46058088	119	2.1	119	80	8	274	25	21	28	25	1.99
46065222--46065446	40	5.7	40	84	5	278	24	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46065229--46065479	119	2.1	119	81	7	278	26	20	27	25	1.99
46082420--46082556	60	2.3	59	83	8	161	28	19	25	26	1.99
46087300--46087436	60	2.3	59	83	8	161	27	20	26	25	1.99
46090952--46090980	14	2.1	14	100	0	58	37	20	20	20	1.94
46091858--46091940	25	3.4	25	81	1	105	44	12	20	22	1.84
46093860--46094063	40	5.1	40	86	4	263	26	28	23	22	1.99
46097138--46097245	40	2.8	39	87	5	148	25	27	22	25	2.00
46100464--46100848	47	8.2	47	91	1	594	32	10	30	25	1.89
46100626--46100700	23	3.2	23	63	29	59	36	8	28	28	1.85
46100967--46101046	37	2.2	37	84	4	99	25	17	30	27	1.97
46102383--46102497	40	2.8	40	84	3	133	26	29	22	20	1.99
46105378--46105555	27	6.6	27	83	3	205	26	15	28	29	1.96
46105379--46105534	82	1.9	81	88	3	233	26	15	28	29	1.96
46105375--46105555	82	2.2	81	83	2	229	27	15	27	29	1.96
46125951--46126323	49	7.7	50	74	10	326	26	18	26	28	1.98
46126110--46126376	140	1.9	140	100	0	534	27	17	27	27	1.97
46146194--46146323	45	2.9	44	88	2	188	28	26	21	23	1.99
46146321--46146448	38	3.4	38	88	0	175	33	24	19	22	1.97
46152598--46152655	10	5.7	10	75	4	53	32	18	29	18	1.96
46152598--46152663	20	3.2	20	80	2	69	30	18	28	22	1.97
46154644--46154683	18	2.1	20	86	9	57	2	22	2	72	1.09
46154730--46154776	17	2.6	17	78	18	51	4	25	4	65	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46156699--46156765	20	3.3	20	78	2	71	29	16	28	25	1.97
46158487--46158517	3	10.3	3	92	0	53	70	0	29	0	0.87
46158463--46158517	18	3.1	18	86	0	74	72	0	20	7	1.07
46162173--46162299	23	5.7	23	71	14	104	51	2	1	44	1.24
46162202--46162243	20	2.3	18	80	15	50	52	0	0	47	1.00
46162137--46162301	88	1.9	88	97	0	312	49	3	3	44	1.33
46162207--46162244	20	1.9	20	94	0	67	50	0	0	50	1.00
46164750--46164802	25	2.1	25	96	0	97	24	11	22	41	1.86
46177031--46177084	22	2.5	22	81	3	65	14	31	35	18	1.91
46181277--46181427	42	3.6	42	80	1	176	29	23	16	29	1.96
46184694--46184898	40	5.1	40	89	1	304	22	23	27	26	2.00
46205491--46205735	40	6.1	40	90	2	343	23	22	27	26	2.00
46210882--46210914	17	1.9	17	93	0	57	21	18	21	39	1.93
46216185--46216228	19	2.3	19	92	0	70	6	34	9	50	1.61
46216815--46216849	18	2.0	18	94	5	63	17	28	40	14	1.88
46219431--46219533	53	1.9	53	94	0	179	24	34	27	13	1.93
46228761--46228786	13	2.0	13	100	0	52	76	0	0	23	0.78
46229268--46229301	18	1.9	18	88	5	52	14	5	0	79	0.91
46231838--46231941	34	3.1	34	83	5	129	24	20	12	43	1.86
46231920--46232099	35	5.2	35	72	7	134	34	20	13	31	1.91
46231842--46232037	34	5.7	34	71	9	121	29	20	11	38	1.87
46231888--46232086	104	1.9	104	83	0	254	32	21	12	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46231914--46232129	104	2.1	104	79	1	227	33	19	13	32	1.91
46233476--46233695	46	5.0	46	84	9	260	20	24	15	39	1.92
46233609--46233684	38	2.0	38	97	0	143	22	27	18	31	1.97
46235811--46235888	27	2.9	28	70	14	72	56	5	1	37	1.30
46237190--46237366	69	2.6	69	80	3	194	27	24	13	34	1.93
46244871--46244949	37	2.1	37	90	0	122	25	31	18	24	1.98
46245068--46245931	47	18.1	47	94	2	1458	29	30	8	31	1.87
46245068--46245931	96	9.0	94	95	2	1458	29	30	8	31	1.87
46245068--46245931	143	6.0	142	95	1	1480	29	30	8	31	1.87
46249598--46249634	8	4.6	8	93	0	65	0	24	18	56	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259