Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  174  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56556053--56556165
43
2.6
44
83
5
124
23
19
27
29
1.98
56560410--56560778
46
8.0
46
93
0
576
38
14
24
22
1.92
56564474--56564517
22
2.0
22
90
0
70
54
2
2
40
1.25
56566387--56566426
10
3.9
10
93
6
71
32
17
20
30
1.95
56566386--56566426
21
2.0
21
100
0
82
34
17
19
29
1.94
56566472--56566541
25
2.8
25
97
0
131
25
27
22
24
2.00
56566472--56566566
50
1.9
50
82
8
122
26
25
23
25
2.00
56566762--56566828
31
2.2
31
94
0
116
38
13
25
22
1.90
56566762--56566844
31
2.7
31
88
3
107
36
14
25
24
1.93
56574227--56574277
25
2.0
25
92
0
84
31
23
17
27
1.97
56574317--56574345
10
2.9
10
100
0
58
31
17
20
31
1.96
56574631--56574700
31
2.3
31
94
0
122
38
15
22
22
1.92
56576237--56576266
3
10.0
3
100
0
60
33
0
0
66
0.92
56582611--56582656
20
2.3
20
81
7
58
10
28
15
45
1.79
56582566--56582685
20
6.0
20
67
16
52
14
26
16
42
1.86
56582548--56582741
100
1.9
100
86
2
273
14
25
18
42
1.88
56584511--56584682
43
4.0
43
72
11
127
34
23
16
25
1.95
56586740--56586817
24
3.2
24
88
0
120
37
3
39
19
1.70
56594706--56594878
46
3.7
46
78
10
208
23
21
26
28
1.99
56594703--56594873
93
1.8
93
94
0
306
23
21
26
28
1.99
56603526--56603698
46
3.7
46
76
10
190
22
20
26
30
1.98
56603523--56603693
93
1.8
93
92
0
288
22
20
27
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56605996--56606036
18
2.2
19
86
4
57
2
21
0
75
0.92
56605995--56606034
21
1.9
21
90
10
64
2
22
0
75
0.93
56607213--56607282
34
2.1
34
88
0
104
28
21
21
28
1.99
56619028--56619078
25
2.0
25
92
0
84
31
23
19
25
1.98
56619118--56619157
10
3.9
10
93
6
71
32
17
20
30
1.95
56619117--56619157
21
2.0
21
100
0
82
34
17
19
29
1.94
56619203--56619272
25
2.8
26
91
6
117
28
27
20
24
1.99
56619202--56619299
25
4.0
23
80
11
79
29
25
20
24
1.99
56619203--56619297
50
1.9
50
80
8
113
29
25
21
24
1.99
56619493--56619574
31
2.7
31
84
3
114
35
15
23
25
1.94
56621589--56621803
46
4.6
48
81
8
246
22
28
20
28
1.98
56621589--56621803
94
2.3
94
86
1
306
22
28
20
28
1.98
56623642--56623685
21
2.1
21
95
0
79
29
9
22
38
1.85
56623913--56623945
17
2.0
17
88
5
50
51
12
9
27
1.69
56632689--56632728
17
2.4
17
100
0
80
32
10
27
30
1.89
56639902--56639969
34
2.0
34
86
11
95
32
20
23
23
1.98
56641596--56641658
21
3.2
21
63
28
57
28
22
1
47
1.60
56641584--56641658
37
2.0
37
97
0
141
29
21
1
48
1.59
56643933--56644055
59
2.1
59
98
0
237
25
13
17
43
1.86
56644735--56644862
43
3.0
43
75
8
134
27
16
27
28
1.97
56652266--56652460
38
5.0
38
84
3
212
31
25
21
22
1.98
56657008--56657139
43
3.1
43
80
12
180
24
16
28
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56664767--56664809
16
2.8
15
75
6
50
39
18
0
41
1.51
56673915--56674085
39
4.4
39
93
0
288
30
25
16
27
1.97
56673880--56674085
78
2.6
78
90
0
259
30
26
17
25
1.97
56674584--56674646
20
3.2
20
82
10
58
22
0
0
77
0.76
56674598--56674645
5
9.6
5
91
8
80
16
0
0
83
0.65
56674598--56674646
26
1.9
25
95
4
89
16
0
0
83
0.64
56682403--56682569
39
4.3
39
88
3
228
29
26
17
25
1.98
56684903--56685051
43
3.5
44
71
14
143
26
18
28
25
1.98
56690201--56690233
7
4.7
7
100
0
66
42
45
12
0
1.41
56703226--56703330
24
4.5
23
76
7
95
36
16
21
25
1.94
56705591--56705646
22
2.5
23
72
16
55
30
17
14
37
1.90
56716895--56716932
20
1.9
20
84
10
51
47
15
2
34
1.60
56723352--56723388
17
2.2
17
95
0
65
59
10
8
21
1.56
56740999--56741053
27
2.0
27
92
0
92
40
25
10
23
1.87
56745569--56745661
6
15.3
6
84
2
105
18
3
4
74
1.12
56749304--56749367
7
8.7
7
74
17
51
26
1
3
68
1.13
56749317--56749367
18
2.8
19
88
8
72
23
1
3
70
1.14
56752360--56752420
6
10.8
5
81
16
59
18
1
4
75
1.06
56752360--56752420
18
3.6
16
80
10
68
18
1
4
75
1.06
56758085--56758127
6
6.5
6
82
17
50
79
0
0
20
0.74
56758086--56758126
21
2.0
22
90
9
68
78
0
0
21
0.76
56773798--56773831
15
2.3
15
90
10
52
23
5
2
67
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56778614--56778651
20
2.0
20
94
5
69
0
28
0
71
0.87
56778612--56778644
16
2.0
17
88
5
50
0
30
0
69
0.88
56778704--56778757
19
2.8
19
80
0
63
38
3
0
57
1.17
56785681--56785728
20
2.4
20
96
0
87
33
25
14
27
1.94
56786052--56786089
20
2.0
20
94
5
69
0
26
2
71
1.00
56786152--56786195
19
2.3
19
84
0
52
38
2
0
59
1.10
56789681--56789733
27
2.0
27
96
0
97
18
28
32
20
1.97
56790920--56790978
26
2.2
27
78
3
66
25
1
1
71
1.05
56808742--56808784
21
2.0
21
100
0
86
32
18
16
32
1.93
56810040--56810088
24
2.0
24
84
4
62
34
10
14
40
1.79
56810740--56810824
43
2.0
43
95
4
154
30
18
17
32
1.95
56811107--56811146
15
2.5
17
84
12
57
70
0
15
15
1.18
56811109--56811148
16
2.6
16
92
4
64
67
0
12
20
1.22
56811121--56811154
16
2.1
16
88
0
50
73
2
8
14
1.19
56811547--56811583
17
2.2
16
90
4
56
21
0
2
75
0.92
56811548--56811609
6
10.5
6
77
16
58
17
0
3
79
0.87
56811548--56811609
30
2.1
30
87
3
90
17
0
3
79
0.87
56823717--56823754
9
4.3
9
84
15
53
81
2
0
15
0.80
56823717--56823754
14
2.8
13
88
11
51
81
2
0
15
0.80
56823806--56823835
12
2.5
12
100
0
60
50
30
6
13
1.67
56823918--56823969
25
2.1
25
85
0
68
48
28
7
15
1.73
56825502--56825731
40
5.8
40
90
1
318
23
28
21
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56834032--56834259
40
5.8
40
85
5
241
25
28
19
26
1.99
56834032--56834259
79
2.9
79
86
5
289
25
28
19
26
1.99
56834032--56834255
119
1.9
119
84
5
301
25
29
19
26
1.98
56842448--56842714
40
6.7
40
97
0
500
21
27
20
30
1.98
56856532--56856592
28
2.1
29
82
8
72
34
14
0
50
1.43
56856551--56856635
30
3.0
28
77
16
93
32
9
2
55
1.45
56861432--56861756
169
1.9
169
93
2
564
41
18
10
30
1.83
56862789--56862924
61
2.2
61
82
3
166
19
28
30
20
1.97
56872720--56872760
19
2.2
18
86
4
55
34
17
0
48
1.47
56873253--56873277
3
8.3
3
100
0
50
32
0
0
68
0.90
56889841--56889882
20
2.2
20
86
4
59
23
0
2
73
0.94
56889905--56889970
34
1.9
34
84
0
87
45
15
6
33
1.70
56891945--56891974
15
2.0
15
100
0
60
0
20
0
80
0.72
56892490--56892647
63
2.5
64
88
4
232
29
19
22
27
1.98
56893466--56893525
26
2.3
26
91
0
93
30
13
18
38
1.89
56896286--56896440
40
3.9
40
87
1
231
14
15
27
43
1.85
56896976--56897012
5
7.6
5
88
11
51
18
0
0
81
0.70
56896984--56897018
17
2.0
17
88
5
52
22
0
0
77
0.78
56901943--56901967
12
2.1
12
100
0
50
52
8
8
32
1.60
56908259--56908306
20
2.4
21
82
10
64
39
14
10
35
1.80
56908477--56908533
23
2.4
24
80
16
66
36
15
21
26
1.93
56908767--56908809
15
2.8
16
79
10
54
76
6
0
16
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56917986--56918024
18
2.2
18
86
4
53
20
7
0
71
1.10
56918123--56918172
22
2.3
22
86
6
66
22
0
4
74
0.99
56918253--56918330
11
7.7
11
72
22
57
34
2
6
56
1.39
56941611--56941653
22
1.9
22
85
4
59
4
41
0
53
1.21
56942740--56942832
28
3.3
28
93
0
159
34
25
7
32
1.84
56942938--56943027
28
3.2
27
85
7
119
20
24
23
32
1.98
56942938--56943052
55
2.1
56
83
8
146
19
24
21
34
1.96
56944253--56944501
86
2.9
86
79
6
279
26
15
20
37
1.92
56946354--56946396
22
1.9
23
86
13
63
20
2
4
72
1.14
56946353--56946403
22
2.3
21
81
18
59
21
1
3
72
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259