genome.fa.s9.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  151  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49427555--49427596	21	2.0	21	100	0	84	57	23	0	19	1.41
49428978--49429051	33	2.3	33	86	6	98	22	24	14	37	1.92
49434157--49434304	51	2.9	50	88	4	224	29	25	14	31	1.94
49434340--49434439	24	4.0	24	76	14	103	25	24	13	38	1.91
49434349--49434448	52	1.9	52	91	0	164	26	25	11	38	1.89
49443256--49443427	93	1.8	93	93	0	299	27	29	21	20	1.98
49443248--49443423	46	3.8	45	82	7	210	28	28	21	21	1.98
49445817--49445866	15	3.4	15	86	2	66	60	12	18	10	1.59
49445828--49445875	15	3.2	15	79	5	53	56	14	16	12	1.68
49448806--49448978	46	3.8	45	77	7	177	28	28	21	20	1.98
49448812--49448983	93	1.8	93	89	0	272	27	30	21	20	1.98
49453323--49453439	42	2.7	43	79	8	123	23	17	25	32	1.97
49454215--49454290	34	2.2	34	83	4	100	25	19	26	28	1.99
49459476--49459530	25	2.2	24	96	3	101	32	10	20	36	1.87
49465968--49466166	51	3.9	51	93	1	319	29	24	13	32	1.94
49481403--49481455	26	2.0	26	96	0	97	37	13	26	22	1.91
49488247--49488282	14	2.6	14	100	0	72	58	13	8	19	1.61
49488391--49488424	16	2.1	16	88	5	50	73	8	8	8	1.25
49488803--49488829	9	3.0	9	100	0	54	11	33	0	55	1.35
49502654--49502754	43	2.3	43	85	6	125	29	15	21	32	1.95
49503843--49503887	22	2.0	22	91	0	72	33	4	24	37	1.76
49505342--49505437	49	2.0	49	97	0	183	36	6	22	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49508966--49509006	18	2.3	18	100	0	82	39	9	14	36	1.79
49509539--49509684	43	3.4	43	85	1	186	28	15	22	32	1.95
49512254--49512309	26	2.2	26	87	6	78	25	3	19	51	1.62
49512264--49512315	26	2.0	26	100	0	104	19	3	23	53	1.61
49515027--49515132	53	2.0	53	83	7	135	46	22	3	27	1.69
49515590--49515661	36	2.0	36	100	0	144	38	5	22	33	1.77
49517533--49517633	29	3.5	29	89	1	150	26	14	28	29	1.95
49521456--49521717	39	6.7	40	88	7	337	24	27	22	25	2.00
49529484--49529745	39	6.7	40	87	7	328	24	27	22	25	2.00
49534738--49534777	16	2.5	16	100	0	80	30	5	12	52	1.60
49537824--49538002	27	6.6	27	92	1	268	26	13	29	30	1.94
49537824--49538002	55	3.3	54	90	1	268	26	13	29	30	1.94
49537824--49538002	82	2.2	82	89	2	270	26	13	29	30	1.94
49545918--49546095	27	6.6	27	83	3	214	26	15	28	30	1.96
49545919--49546074	82	1.9	81	89	3	242	26	15	28	30	1.96
49545915--49546095	82	2.2	81	84	2	238	26	15	27	30	1.96
49559893--49559918	12	2.2	12	100	0	52	50	7	0	42	1.31
49560398--49560604	27	7.6	27	90	2	297	25	14	28	31	1.94
49560398--49560604	55	3.8	55	89	1	308	25	14	28	31	1.94
49560398--49560604	82	2.5	83	91	1	319	25	14	28	31	1.94
49561477--49562078	300	2.0	300	99	0	1186	33	17	21	28	1.96
49566791--49566946	19	8.4	18	66	17	61	47	12	17	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49566806--49566946	31	4.5	31	88	0	174	47	12	17	21	1.81
49566791--49566946	6	25.3	6	67	17	70	47	12	17	22	1.81
49567078--49567151	27	2.8	27	87	2	105	37	21	22	17	1.94
49567746--49567941	27	7.3	27	85	0	232	25	21	19	33	1.97
49567765--49567941	81	2.2	81	88	4	259	24	21	20	33	1.97
49567979--49568208	27	8.5	26	80	6	165	30	9	21	38	1.85
49567962--49568208	54	4.6	54	79	5	230	30	8	21	39	1.84
49567985--49568208	81	2.8	81	80	5	231	30	9	20	39	1.84
49570195--49570237	21	2.0	21	91	8	70	67	4	6	20	1.33
49600290--49600460	93	1.8	93	93	0	297	28	29	21	21	1.98
49600284--49600457	46	3.8	46	79	10	201	29	28	20	21	1.98
49607813--49607923	57	2.0	56	82	8	136	25	29	17	27	1.97
49607813--49607921	28	3.9	29	83	7	127	24	30	17	27	1.97
49608136--49608178	16	2.7	16	88	0	59	6	16	20	55	1.64
49615489--49615570	28	2.9	28	82	10	98	28	29	17	25	1.97
49615797--49615834	16	2.4	16	86	8	51	18	15	21	44	1.86
49617062--49617093	16	2.0	16	93	0	55	9	6	34	50	1.60
49621938--49621964	14	1.9	14	100	0	54	37	33	7	22	1.82
49623482--49623508	14	1.9	14	100	0	54	29	11	14	44	1.80
49635259--49635365	42	2.5	43	81	4	137	25	16	25	32	1.96
49635218--49635376	43	3.7	43	73	10	137	25	18	24	30	1.98
49642179--49642497	49	6.7	47	97	1	566	32	8	28	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49642478--49642518	21	2.0	21	95	0	73	36	9	17	36	1.82
49642431--49642565	68	2.0	68	98	0	261	34	8	24	31	1.86
49642384--49642601	115	1.9	115	97	0	409	33	8	27	31	1.86
49642499--49642652	47	3.3	47	88	0	218	33	9	29	27	1.88
49642335--49642652	162	2.0	163	91	1	521	33	8	28	29	1.87
49642771--49642849	37	2.1	37	88	0	113	25	16	30	27	1.97
49644063--49644334	40	6.8	40	92	0	418	23	21	28	26	1.99
49648104--49648552	47	9.5	47	94	0	772	32	8	29	28	1.87
49648234--49648312	25	3.3	25	61	10	65	32	5	29	32	1.79
49648104--49648552	237	1.9	235	93	0	772	32	8	29	28	1.87
49648671--49648749	37	2.1	37	88	0	113	25	18	30	25	1.98
49652567--49652717	44	3.5	44	84	5	175	24	19	26	29	1.98
49659563--49660087	262	2.0	262	98	0	1005	38	16	15	30	1.89
49660637--49660701	22	2.9	23	79	4	71	35	21	23	20	1.96
49662593--49662638	24	1.9	24	81	0	56	17	36	4	41	1.69
49664474--49664548	32	2.4	31	86	4	98	36	20	24	20	1.95
49664470--49664548	30	2.6	30	85	4	104	35	18	24	21	1.96
49664606--49664731	43	2.9	43	86	0	171	24	30	21	23	1.99
49665014--49665074	27	2.2	28	80	8	72	32	13	13	40	1.82
49673114--49673172	23	2.6	22	76	10	57	33	16	22	27	1.95
49687703--49687882	48	3.7	48	88	0	270	22	17	33	27	1.96
49690348--49690539	50	3.9	49	81	9	212	30	27	18	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49701767--49701943	48	3.6	48	88	3	239	24	16	31	27	1.96
49705707--49705828	42	2.8	42	76	15	115	32	25	15	26	1.95
49706968--49706992	13	1.9	13	100	0	50	40	24	4	32	1.73
49709284--49709414	64	2.0	64	98	0	253	35	27	11	25	1.91
49717474--49717516	19	2.3	19	84	8	52	23	11	25	39	1.88
49719276--49719341	26	2.5	26	77	2	69	36	36	15	12	1.84
49722770--49722893	50	2.4	50	80	9	151	37	15	12	33	1.86
49727050--49727172	50	2.4	50	82	8	167	38	14	13	34	1.85
49732481--49732571	42	2.2	41	78	9	94	32	15	23	28	1.95
49733503--49733548	24	1.9	24	95	0	83	28	2	26	43	1.66
49736150--49736177	6	4.7	6	100	0	56	17	17	17	46	1.85
49745814--49745857	17	2.8	16	80	10	54	15	20	0	63	1.31
49751156--49751193	20	1.9	20	88	0	58	42	21	28	7	1.81
49755215--49755252	6	6.0	6	93	6	58	63	34	0	2	1.09
49757343--49757546	102	2.0	101	95	0	363	37	11	6	43	1.68
49764385--49764443	29	2.0	29	93	0	100	23	23	11	40	1.88
49765733--49765995	145	1.8	145	85	3	377	41	9	8	40	1.68
49767141--49767188	25	1.9	26	87	8	73	33	29	8	29	1.86
49776157--49776188	13	2.5	13	89	0	55	31	37	25	6	1.81
49777070--49777254	47	3.9	47	72	9	160	23	30	19	27	1.98
49777070--49777287	47	4.6	47	70	12	133	22	29	20	27	1.98
49777633--49777695	30	2.1	30	90	0	99	26	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49779721--49779942	45	4.8	46	82	3	250	25	30	18	26	1.98
49786241--49786368	48	2.7	48	85	2	170	21	30	21	25	1.99
49786596--49786633	19	2.0	19	94	0	67	28	15	13	42	1.85
49789457--49789490	16	2.1	16	88	0	50	44	26	8	20	1.81
49789650--49789692	20	2.2	20	91	0	68	25	11	11	51	1.72
49791807--49791847	21	2.0	21	85	4	57	70	0	2	26	0.99
49801361--49801390	12	2.5	12	94	0	51	43	13	16	26	1.85
49801615--49801648	17	1.9	18	94	5	61	23	20	5	50	1.70
49802341--49802390	20	2.5	21	80	6	59	36	0	6	58	1.23
49802475--49802513	9	4.3	9	86	0	51	33	2	12	51	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259