Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  208  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65981004--65981057
22
2.7
20
80
13
58
59
5
1
33
1.31
65981012--65981069
21
2.7
21
74
10
55
58
5
1
34
1.30
65981155--65981215
17
3.8
17
76
20
60
54
3
6
36
1.43
65981977--65982014
15
2.5
15
95
4
67
21
5
13
60
1.52
65981976--65982015
16
2.5
17
88
12
66
20
5
12
62
1.48
65982228--65982360
30
4.5
31
75
11
100
42
2
21
33
1.66
65982242--65982357
30
3.9
31
80
9
127
42
2
24
31
1.68
65982228--65982357
60
2.2
59
83
4
172
42
2
22
33
1.66
65982354--65982399
24
2.0
23
91
4
74
30
0
0
69
0.89
65983197--65983253
19
2.9
19
78
14
62
33
0
8
57
1.29
65983224--65983257
15
2.3
15
94
0
59
35
0
11
52
1.38
65983202--65983273
21
3.6
19
81
7
72
30
1
9
58
1.39
65983569--65983597
15
2.0
15
93
6
51
24
0
6
68
1.13
65985931--65985981
26
2.0
26
84
0
66
23
13
31
31
1.93
65990881--65990915
17
2.1
17
100
0
70
40
0
5
54
1.24
65991082--65991115
16
2.1
16
88
0
50
50
14
17
17
1.79
65993914--65993954
21
2.0
21
90
0
64
29
21
29
19
1.98
65995859--65995892
16
2.1
16
88
0
50
50
14
17
17
1.79
65998375--65998413
16
2.4
16
91
4
60
82
7
2
7
0.94
66001691--66001733
16
2.7
16
96
0
77
65
16
6
11
1.46
66002273--66002306
16
2.2
16
89
5
52
50
8
11
29
1.69
66002298--66002327
11
2.7
11
100
0
60
83
0
0
16
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66002299--66002335
12
3.2
12
92
3
58
81
0
0
18
0.70
66002513--66002574
17
3.8
17
76
16
51
37
6
1
54
1.36
66002705--66002730
3
8.7
3
100
0
52
34
0
0
65
0.93
66002636--66002719
19
4.3
19
71
24
68
32
4
5
57
1.44
66012265--66013016
72
10.1
73
87
5
911
32
16
17
33
1.93
66012417--66012575
84
1.9
85
93
1
275
31
15
16
35
1.91
66012867--66013178
169
1.9
167
85
5
441
29
19
20
30
1.97
66013035--66014098
79
13.1
78
72
14
561
29
17
18
34
1.94
66013265--66013425
75
2.1
76
82
6
193
29
19
18
32
1.96
66013117--66014051
168
5.6
168
83
8
778
30
16
18
34
1.93
66013456--66013598
75
1.9
75
84
2
189
28
19
20
30
1.97
66013598--66014007
80
5.2
80
82
4
499
30
16
18
34
1.93
66013600--66014062
160
2.9
158
85
4
619
30
15
18
34
1.92
66013620--66014053
80
5.4
79
80
8
404
31
16
18
33
1.93
66013432--66014098
159
4.1
155
82
9
645
29
16
17
35
1.93
66014578--66014623
16
2.8
17
86
6
76
67
15
6
10
1.40
66015162--66015195
16
2.2
16
89
5
52
50
8
11
29
1.69
66015187--66015212
8
3.2
8
100
0
52
84
0
0
15
0.62
66022893--66022946
25
2.2
25
96
0
99
48
20
5
25
1.71
66026443--66026586
55
2.6
54
84
3
182
41
17
24
16
1.89
66027711--66028451
180
4.2
179
83
6
923
30
17
23
28
1.97
66027994--66028077
43
2.0
43
86
9
118
32
13
26
28
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66027763--66028513
355
2.1
356
89
1
1130
30
18
23
27
1.97
66029535--66029584
26
2.0
24
88
7
73
64
6
0
30
1.18
66029555--66029613
21
2.8
21
78
12
59
69
8
0
22
1.15
66032202--66032251
14
3.7
14
71
10
50
12
4
6
78
1.08
66032189--66032248
26
2.3
25
80
8
66
10
3
10
76
1.12
66036226--66036282
25
2.2
26
84
9
73
12
3
10
73
1.21
66036941--66036965
2
12.5
2
100
0
50
52
0
0
48
1.00
66039813--66039927
57
2.0
57
98
0
221
22
32
13
32
1.92
66042933--66043000
16
4.2
16
96
0
127
38
35
0
26
1.57
66045622--66045755
68
1.9
70
85
5
184
44
4
4
46
1.43
66054017--66054070
23
2.4
22
78
9
56
25
9
9
55
1.61
66061006--66061046
21
2.0
21
90
0
64
29
21
29
19
1.98
66066587--66066843
122
2.1
122
84
5
342
39
15
9
35
1.80
66069731--66069761
15
2.1
15
93
0
53
35
0
0
64
0.94
66075520--66075592
36
2.0
36
100
0
146
24
13
16
45
1.84
66076091--66076233
68
2.1
68
97
0
268
27
11
32
27
1.92
66077020--66077064
19
2.4
18
86
13
65
66
0
33
0
0.92
66079518--66079602
21
3.9
22
76
7
75
37
24
20
17
1.93
66079976--66080033
15
3.8
15
86
2
80
53
12
0
34
1.38
66080269--66080318
24
2.2
22
82
7
55
2
36
4
58
1.29
66080340--66080371
5
6.2
5
96
3
55
56
0
0
43
0.99
66080394--66080422
8
3.6
8
100
0
58
62
0
0
37
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66083941--66083986
20
2.3
20
88
3
67
41
13
28
17
1.86
66084753--66084797
23
2.0
23
100
0
90
37
17
4
40
1.70
66086876--66087332
46
10.0
46
86
0
567
41
14
23
20
1.89
66098184--66098216
5
6.8
5
93
6
59
18
0
0
81
0.68
66098185--66098215
14
2.2
14
100
0
62
19
0
0
80
0.71
66102730--66102809
39
2.1
39
100
0
160
41
23
12
22
1.88
66110595--66110628
12
2.9
12
86
4
52
32
0
0
67
0.91
66110752--66110813
30
2.1
30
93
0
106
59
11
3
25
1.46
66111579--66111634
18
3.2
17
80
16
69
53
1
0
44
1.11
66113476--66113716
112
2.1
112
95
0
428
43
13
7
35
1.74
66122776--66122858
35
2.4
35
84
9
109
43
30
6
20
1.76
66122827--66122884
21
2.8
21
79
10
57
44
31
3
20
1.68
66123362--66123414
10
5.1
10
82
8
70
37
1
1
58
1.20
66123537--66123570
18
1.9
18
94
5
61
32
5
8
52
1.56
66139633--66139742
51
2.2
51
89
0
166
26
22
17
33
1.96
66142300--66142454
60
2.6
59
80
7
170
53
1
0
43
1.16
66144402--66144427
2
13.0
2
100
0
52
50
50
0
0
1.00
66149590--66149634
19
2.3
20
92
3
74
68
2
0
28
1.01
66149567--66149643
29
2.7
29
74
8
75
66
3
1
28
1.17
66149599--66149645
19
2.5
20
86
6
62
72
2
2
23
1.06
66150171--66150249
40
2.0
40
97
0
149
39
7
15
37
1.76
66153827--66153874
11
4.2
11
74
10
51
35
2
0
62
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66155949--66156130
46
4.0
46
89
1
240
40
14
24
20
1.90
66156391--66156437
25
2.0
25
83
8
62
53
4
14
27
1.60
66163410--66163436
12
2.2
12
100
0
54
22
11
22
44
1.84
66165030--66165083
26
2.1
26
100
0
108
35
20
0
44
1.52
66166616--66166640
12
2.1
12
100
0
50
40
16
16
28
1.89
66167781--66167856
27
2.7
26
84
10
89
65
2
0
31
1.06
66167807--66167867
27
2.3
26
85
5
77
62
0
3
34
1.12
66169521--66169558
20
1.9
20
84
10
51
42
13
23
21
1.88
66171461--66171730
46
5.9
46
90
0
398
39
14
23
22
1.91
66173592--66173621
14
2.1
14
100
0
60
30
20
13
36
1.90
66177891--66177935
14
3.0
14
78
15
54
68
0
6
24
1.13
66178921--66178958
18
2.1
19
85
5
51
26
7
5
60
1.46
66179088--66179129
20
2.1
21
82
8
52
35
0
9
54
1.33
66184833--66184864
12
2.6
13
85
14
50
15
12
31
40
1.85
66190473--66190626
80
1.9
81
81
4
186
42
9
5
42
1.58
66190473--66190650
80
2.3
81
77
7
179
44
10
4
41
1.58
66191928--66192014
23
3.8
22
68
22
56
41
1
10
47
1.45
66194239--66194274
15
2.6
13
84
16
54
69
0
2
27
1.02
66194239--66194274
14
2.6
14
87
12
56
69
0
2
27
1.02
66194747--66194800
13
4.2
13
80
2
65
37
3
1
57
1.27
66201037--66201184
51
2.9
51
84
2
190
28
23
15
32
1.95
66201208--66201324
24
4.5
28
79
16
151
26
23
14
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66201208--66201324
52
2.2
52
93
0
207
26
23
14
35
1.94
66202814--66202851
12
3.0
13
76
7
51
57
2
0
39
1.12
66204259--66204292
17
1.9
18
94
5
61
76
5
5
11
1.14
66204224--66204296
32
2.3
32
83
9
87
71
5
5
17
1.25
66204336--66204365
13
2.3
13
100
0
60
60
0
6
33
1.23
66204987--66205069
41
2.0
41
100
0
166
33
16
16
32
1.92
66206435--66206540
7
15.1
7
92
0
167
44
3
27
24
1.71
66208976--66209013
19
2.0
20
85
15
53
7
0
7
84
0.79
66208975--66209038
28
2.3
27
81
7
74
10
1
7
79
0.99
66210351--66210398
20
2.5
20
86
3
62
64
2
6
27
1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259