genome.fa.s9.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  219  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69440456--69440488	16	2.1	16	88	5	50	21	0	0	78	0.75
69446811--69446844	11	3.0	11	86	4	50	35	32	0	32	1.58
69448887--69448920	17	2.1	16	89	10	52	47	11	0	41	1.40
69451146--69451200	16	3.3	16	76	5	56	29	0	5	65	1.15
69453716--69453746	2	15.5	2	100	0	62	0	48	0	51	1.00
69472179--69472205	4	6.8	4	100	0	54	51	0	22	25	1.48
69477171--69477211	21	2.0	21	90	0	64	24	26	12	36	1.91
69481656--69481723	20	3.3	20	69	15	57	29	19	5	45	1.73
69481648--69481730	42	2.0	42	97	0	157	30	19	6	44	1.74
69503517--69503567	17	2.9	17	75	13	50	33	0	1	64	1.05
69506404--69506439	3	12.0	3	100	0	72	33	0	0	66	0.92
69506794--69506892	22	4.5	21	77	16	76	30	5	5	59	1.40
69506904--69506957	23	2.3	24	83	3	65	35	7	5	51	1.53
69507157--69507202	23	2.0	23	84	16	60	32	0	8	58	1.28
69507184--69507208	10	2.5	10	100	0	50	40	0	8	52	1.31
69507192--69507288	25	3.9	26	76	11	89	35	5	5	54	1.45
69507298--69507364	29	2.2	30	80	15	77	31	1	8	58	1.38
69510467--69510506	21	1.9	21	94	0	71	47	0	2	50	1.14
69510467--69510514	21	2.5	20	86	10	64	47	0	2	50	1.12
69514580--69514608	2	14.5	2	100	0	58	51	0	0	48	1.00
69524311--69524337	7	3.9	7	100	0	54	59	11	14	14	1.62
69527600--69527668	31	2.2	31	86	0	102	43	8	11	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69528526--69528573	22	2.2	22	85	7	62	52	2	8	37	1.44
69529258--69529299	17	2.5	17	92	0	66	35	14	14	35	1.86
69529268--69529306	17	2.3	17	90	0	60	41	10	17	30	1.83
69536420--69536449	14	2.1	14	93	0	51	33	13	10	43	1.77
69543154--69543302	27	5.4	27	69	18	87	65	4	5	25	1.32
69543154--69543482	26	12.5	26	71	14	151	60	3	5	30	1.34
69543154--69543482	55	6.2	53	72	11	176	60	3	5	30	1.34
69543180--69543304	29	4.6	27	75	13	112	63	4	4	27	1.35
69546994--69547177	58	3.2	57	68	18	162	28	17	17	35	1.94
69546921--69547177	116	2.2	118	91	2	419	27	17	18	35	1.94
69557473--69557533	17	3.8	17	76	20	60	54	3	6	36	1.43
69558285--69558321	14	2.5	14	91	8	56	21	5	10	62	1.48
69558284--69558322	15	2.5	16	87	4	62	20	5	10	64	1.44
69558283--69558326	16	2.7	17	82	10	65	18	6	11	63	1.48
69558570--69558664	30	3.2	30	86	3	129	42	4	24	29	1.73
69558661--69558706	24	1.9	24	90	0	74	23	0	2	73	0.94
69558892--69559174	78	3.7	74	80	6	300	33	18	16	32	1.93
69559010--69559489	172	2.8	165	83	8	476	36	19	14	28	1.92
69559084--69559489	87	4.7	87	82	6	500	38	19	14	27	1.91
69559084--69559489	172	2.4	174	85	5	531	38	19	14	27	1.91
69559417--69559446	14	2.1	14	93	0	51	66	3	6	23	1.30
69562652--69562714	5	12.6	5	100	0	126	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69563985--69564041	15	3.9	15	86	2	80	33	0	14	52	1.41
69564415--69564476	21	2.9	21	80	4	79	14	17	25	41	1.88
69574934--69574994	17	3.8	17	76	20	60	54	3	6	36	1.43
69580335--69580394	30	2.0	30	96	0	111	3	8	20	68	1.30
69585527--69585565	16	2.4	17	83	16	55	38	12	10	38	1.78
69585536--69585567	16	2.0	16	100	0	64	37	18	6	37	1.76
69594001--69594220	21	10.5	21	77	5	176	47	13	19	19	1.82
69593998--69594220	42	5.3	42	80	3	243	47	13	19	19	1.83
69595432--69595479	20	2.4	21	83	10	57	50	4	2	43	1.33
69596870--69597139	3	88.3	3	68	21	118	31	4	4	59	1.37
69596875--69596927	22	2.3	23	90	3	81	26	3	7	62	1.39
69602605--69602853	50	4.8	50	85	4	284	20	29	24	26	1.99
69602604--69602853	100	2.4	104	88	6	357	20	29	24	26	1.99
69602948--69602979	13	2.5	13	94	0	55	56	12	0	31	1.37
69611957--69612783	151	5.5	146	80	9	877	31	16	18	33	1.93
69611969--69612780	223	3.6	221	82	8	1003	31	16	19	33	1.93
69612499--69612782	73	3.9	74	84	5	364	31	16	20	31	1.95
69611964--69612783	72	11.0	74	80	9	787	31	16	19	33	1.93
69612775--69612803	14	2.0	15	93	6	51	13	31	6	48	1.69
69614828--69614864	19	1.9	19	94	0	65	27	5	5	62	1.39
69614871--69614929	24	2.5	24	78	10	66	35	6	0	57	1.25
69614826--69614908	3	26.7	3	71	16	53	32	6	3	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69614998--69615039	17	2.5	17	80	7	50	33	4	0	61	1.17
69615097--69615150	3	17.7	3	81	11	56	33	0	3	62	1.12
69615088--69615130	12	3.6	12	87	0	59	25	2	6	65	1.30
69618565--69618612	17	2.9	17	82	14	57	66	2	0	31	1.03
69618551--69618618	17	3.9	18	72	16	54	63	2	1	32	1.18
69619249--69619299	18	2.8	17	80	16	57	35	0	1	62	1.06
69634667--69634778	23	4.9	23	68	21	67	55	6	7	31	1.52
69634736--69634778	11	3.9	11	81	0	50	60	4	0	34	1.17
69635306--69635341	11	3.2	12	88	11	58	47	0	52	0	1.00
69635432--69635491	13	4.8	13	72	15	54	21	0	3	75	0.95
69635538--69635576	17	2.3	17	86	8	53	71	0	10	17	1.12
69637076--69637114	21	1.9	20	94	5	69	48	10	5	35	1.59
69644093--69644126	15	2.3	15	100	0	68	20	20	20	38	1.94
69647093--69647117	3	8.3	3	100	0	50	64	0	36	0	0.94
69647155--69647191	12	3.2	12	96	3	67	48	0	43	8	1.32
69649479--69649564	35	2.5	35	81	9	106	45	0	4	50	1.22
69649506--69649566	24	2.5	23	80	15	61	45	0	4	49	1.23
69649917--69649947	16	2.0	15	93	6	53	70	0	29	0	0.87
69649968--69649999	13	2.5	13	100	0	64	31	0	21	46	1.52
69650658--69650744	40	2.2	40	82	0	102	34	6	17	41	1.76
69657005--69657070	13	5.1	13	76	7	62	37	25	4	31	1.76
69659992--69660138	43	3.4	44	85	4	192	27	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69664020--69664058	20	2.0	20	84	0	51	46	2	2	48	1.29
69668594--69668690	30	3.1	30	87	11	149	22	4	16	56	1.57
69668594--69668698	34	3.2	34	93	5	173	22	4	16	56	1.59
69669031--69669069	20	2.0	20	89	0	60	43	2	0	53	1.14
69669934--69669975	21	2.0	21	86	4	59	33	21	23	21	1.97
69675877--69675926	19	2.7	18	78	6	55	14	8	6	72	1.27
69676362--69676401	21	1.9	21	89	0	62	30	17	10	42	1.82
69679845--69679878	12	2.8	13	91	8	54	50	0	0	50	1.00
69682506--69682566	26	2.3	26	88	0	86	24	18	16	40	1.90
69688791--69689004	52	4.3	51	76	13	171	23	15	28	31	1.95
69688798--69689001	46	4.1	47	74	13	160	23	16	28	31	1.96
69693736--69693800	33	2.0	33	96	0	121	46	10	16	26	1.80
69700108--69700166	23	2.5	22	76	15	57	40	1	16	40	1.59
69700250--69700306	19	3.1	19	82	7	64	54	8	0	36	1.32
69700324--69700367	18	2.4	18	80	0	52	43	0	0	56	0.99
69702896--69702933	18	2.1	18	90	9	60	28	5	5	60	1.40
69703169--69703228	18	3.3	18	76	17	54	40	3	1	55	1.27
69711022--69711095	39	1.9	38	84	13	98	36	2	4	56	1.32
69727256--69727297	20	2.0	20	86	4	57	42	2	4	50	1.36
69741196--69741235	20	2.0	20	95	0	71	17	20	17	45	1.86
69743982--69744011	2	15.5	2	93	6	53	53	0	0	46	1.00
69746969--69747004	17	2.1	17	89	0	54	44	22	5	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69746992--69747029	17	2.2	17	90	0	58	34	28	5	31	1.80
69748641--69748722	43	1.9	43	89	0	128	25	20	25	28	1.99
69751439--69751472	15	2.3	15	90	10	52	32	0	0	67	0.91
69751451--69751527	24	3.3	22	71	12	57	29	1	3	64	1.19
69751533--69751609	7	11.4	7	75	14	56	40	2	0	57	1.13
69751539--69751606	22	3.1	22	77	6	68	41	2	0	55	1.15
69751708--69751768	22	2.8	22	81	13	65	32	1	1	63	1.13
69751716--69751761	17	2.5	19	82	10	60	32	0	2	65	1.05
69751703--69751762	27	2.2	25	78	16	66	30	1	1	66	1.11
69751732--69751773	19	2.2	19	84	16	52	38	0	2	59	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259