genome.fa.s9.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  95  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30993096--30993628	44	11.8	44	71	13	289	28	21	17	32	1.96
30993746--30994070	44	7.4	43	64	16	121	22	22	20	34	1.97
30993652--30994214	88	6.4	88	89	0	808	21	23	20	34	1.97
30993652--30994214	175	3.2	176	88	1	826	21	23	20	34	1.97
30993650--30994214	263	2.1	261	89	1	860	21	23	20	34	1.97
30993788--30994195	44	9.3	43	64	15	140	22	22	21	34	1.97
31004177--31004343	43	3.9	44	82	10	175	25	20	29	23	1.99
31006117--31006172	27	2.1	27	100	0	112	17	10	26	44	1.82
31007449--31007563	29	4.0	29	82	6	119	27	28	14	28	1.95
31007443--31007550	29	3.8	29	82	6	121	26	29	15	27	1.96
31012421--31012445	11	2.3	11	100	0	50	16	36	0	48	1.46
31014391--31014416	12	2.2	12	100	0	52	0	34	0	65	0.93
31015650--31015726	27	2.9	27	84	0	82	35	18	16	29	1.93
31015854--31015935	27	3.0	26	82	7	92	20	23	20	35	1.96
31017128--31017180	23	2.3	23	86	0	70	39	16	20	22	1.92
31017572--31017724	76	2.0	76	100	0	306	26	27	15	30	1.96
31023151--31023221	24	3.1	23	78	10	74	71	2	18	7	1.21
31024422--31024473	27	2.0	26	84	3	68	34	21	26	17	1.95
31033064--31033119	15	3.7	15	83	9	78	60	8	16	14	1.57
31054049--31054189	39	3.6	40	80	8	139	22	27	26	23	2.00
31057928--31057992	19	3.3	19	70	8	67	24	26	32	16	1.96
31057915--31058012	40	2.5	40	96	0	178	26	24	31	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31057988--31058040	27	2.0	26	85	3	70	35	20	26	16	1.94
31063142--31063169	10	2.8	10	100	0	56	50	10	10	28	1.71
31063601--31063648	24	2.0	25	95	4	89	56	4	22	16	1.58
31063601--31063656	24	2.4	23	88	8	78	50	5	28	16	1.67
31065207--31065486	144	2.0	143	85	6	379	24	31	17	26	1.97
31065157--31065486	48	6.9	48	77	6	303	24	30	18	27	1.98
31067533--31067575	21	2.1	21	91	4	70	20	25	20	32	1.97
31068521--31068575	27	2.1	26	90	10	85	29	9	16	45	1.78
31073163--31073236	24	2.9	26	76	17	66	6	21	1	70	1.18
31091177--31091228	23	2.3	22	75	21	54	9	23	1	65	1.32
31092993--31093025	6	5.3	6	92	7	57	84	0	0	15	0.61
31092993--31093025	13	2.6	13	95	4	59	84	0	0	15	0.61
31092985--31093025	19	2.1	20	95	4	75	82	0	0	17	0.66
31094372--31094424	23	2.4	22	76	20	56	9	18	1	69	1.25
31096799--31096831	6	5.3	6	92	7	57	84	0	0	15	0.61
31096799--31096831	13	2.6	13	95	4	59	84	0	0	15	0.61
31096791--31096831	19	2.1	20	95	4	75	82	0	0	17	0.66
31099480--31099526	20	2.3	20	81	0	58	23	12	34	29	1.92
31101196--31101301	48	2.2	48	85	9	137	14	24	1	59	1.45
31101364--31101500	21	6.7	21	71	18	53	8	18	2	69	1.28
31101363--31101419	14	4.1	14	75	16	57	8	17	1	71	1.19
31101381--31101501	57	2.1	55	82	11	138	8	19	2	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31101381--31101488	6	17.7	6	68	5	65	7	19	2	70	1.24
31102704--31102736	13	2.6	13	90	4	50	9	3	3	84	0.82
31104374--31104420	20	2.3	20	81	0	58	23	12	34	29	1.92
31106266--31106307	17	2.4	18	80	7	52	57	4	23	14	1.56
31108422--31108483	28	2.3	27	84	15	83	66	6	16	11	1.43
31108883--31108908	13	2.0	13	100	0	52	69	0	0	30	0.89
31110895--31110934	21	1.9	21	94	0	71	30	35	2	32	1.71
31113415--31113457	20	2.2	20	86	0	59	53	2	30	13	1.53
31115695--31115756	10	5.9	10	76	10	61	35	32	1	30	1.68
31115695--31115757	21	3.0	21	90	2	90	34	33	1	30	1.67
31117622--31117668	20	2.3	20	81	0	58	23	12	34	29	1.92
31119338--31119443	48	2.2	48	85	9	137	14	24	1	59	1.45
31122131--31122177	20	2.3	20	81	0	58	23	12	34	29	1.92
31129538--31129585	15	3.3	14	80	8	60	4	18	0	77	0.93
31129538--31129596	21	2.8	21	87	5	75	6	22	0	71	1.09
31130483--31130558	31	2.5	31	84	4	100	9	13	2	75	1.15
31130602--31130632	13	2.4	13	94	0	53	12	3	6	77	1.08
31134143--31134189	20	2.3	20	85	0	67	29	36	12	21	1.91
31136296--31136354	23	2.5	23	78	8	66	25	5	33	35	1.78
31143342--31143379	15	2.4	17	86	8	53	5	26	0	68	1.11
31143345--31143379	17	2.1	17	89	10	54	5	25	0	68	1.11
31144310--31144362	12	4.3	12	87	2	70	18	5	1	73	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31144303--31144356	24	2.2	24	96	0	99	12	7	3	75	1.14
31151490--31151541	13	4.0	13	87	5	70	23	11	0	65	1.25
31151491--31151541	27	2.0	24	88	11	75	23	11	0	64	1.26
31151580--31151620	11	3.6	11	90	3	55	14	2	7	75	1.12
31154524--31154558	13	2.6	14	86	9	54	11	14	5	68	1.37
31157557--31157603	20	2.3	20	81	0	58	23	12	34	29	1.92
31159274--31159379	48	2.2	48	85	9	137	14	24	1	59	1.45
31161941--31161987	20	2.3	20	81	0	58	23	12	34	29	1.92
31162830--31162868	12	3.2	12	92	7	69	71	7	0	20	1.10
31162833--31162866	13	2.6	13	100	0	68	82	5	0	11	0.83
31162905--31162946	16	2.6	16	92	3	66	61	4	11	21	1.48
31167310--31167344	18	2.0	17	94	5	61	22	0	40	37	1.55
31171980--31172029	18	2.6	19	87	9	66	4	20	2	74	1.08
31171986--31172029	19	2.4	17	82	14	52	4	18	2	75	1.09
31173646--31173692	20	2.3	20	85	7	60	27	17	29	25	1.97
31175814--31175933	10	11.9	10	74	11	93	20	30	13	35	1.91
31175814--31175932	30	4.0	30	78	15	104	21	30	13	35	1.91
31180771--31180867	30	3.2	30	75	2	106	28	26	15	28	1.96
31185053--31185114	12	5.0	12	90	7	88	14	8	3	74	1.18
31186845--31186891	20	2.3	20	85	0	67	21	12	36	29	1.91
31191860--31191962	30	3.4	29	72	6	98	30	15	26	28	1.96
31197398--31197447	22	2.3	22	80	16	59	74	2	2	22	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31201526--31201631	48	2.2	47	83	9	126	60	1	24	13	1.43
31204068--31204114	18	2.5	18	76	16	51	29	12	12	44	1.80
31209294--31209348	17	3.2	17	76	5	56	9	12	3	74	1.18
31211561--31211604	11	3.7	11	90	9	61	13	11	2	72	1.21
31218100--31218200	52	1.9	52	93	0	175	27	18	20	32	1.96
31220331--31220392	10	5.9	10	74	10	52	33	30	3	32	1.74
31220352--31220393	21	2.0	21	95	0	75	30	33	2	33	1.71
31221600--31221650	12	3.9	12	76	18	57	13	9	1	74	1.15
31221603--31221650	15	3.3	15	72	21	57	10	8	2	79	1.02
31224663--31224689	14	1.9	14	100	0	54	70	7	7	14	1.32
31226946--31226999	23	2.2	25	78	15	60	62	3	22	11	1.43
31232237--31232432	107	1.8	107	95	0	356	40	25	15	18	1.90
31234511--31234575	20	3.3	19	73	16	51	38	16	21	23	1.93
31237969--31238015	20	2.3	20	85	0	67	29	36	12	21	1.91
31239478--31239503	6	4.3	6	100	0	52	15	0	0	84	0.62
31243861--31243913	21	2.5	21	84	3	61	33	33	1	30	1.69
31250382--31250478	30	3.2	30	75	2	106	28	15	26	28	1.96
31252812--31252849	10	3.8	10	83	13	51	21	18	31	28	1.97
31252789--31252849	20	3.0	20	83	9	63	27	14	27	29	1.95
31252813--31252850	20	1.9	20	94	0	67	18	18	34	28	1.95
31255625--31255679	14	3.9	14	92	7	94	20	9	0	70	1.13
31255627--31255679	27	2.0	27	96	0	97	18	7	0	73	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31256988--31257025	10	3.8	10	83	13	51	21	18	31	28	1.97
31256965--31257025	20	3.0	20	83	9	63	27	14	27	29	1.95
31256989--31257026	20	1.9	20	94	0	67	18	18	34	28	1.95
31258124--31258154	12	2.6	12	100	0	62	25	16	12	45	1.83
31258215--31258264	6	8.2	6	81	16	50	2	20	2	76	0.99
31258204--31258274	37	1.9	37	86	11	101	2	18	2	76	1.04
31258200--31258260	16	3.8	16	77	14	63	3	19	1	75	1.03
31260715--31260753	12	3.1	13	85	14	55	12	5	7	74	1.20
31260725--31260753	13	2.1	14	93	6	51	13	3	6	75	1.13
31262469--31262565	30	3.2	30	75	2	106	28	15	26	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259