genome.fa.s9.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  152  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49803332--49803370	19	2.0	19	85	14	53	48	7	10	33	1.66
49803599--49803764	82	2.0	82	94	0	287	24	12	23	40	1.88
49804477--49804540	29	2.2	29	94	0	110	32	3	15	48	1.61
49811725--49811767	23	1.9	22	95	4	77	23	9	30	37	1.86
49811853--49811929	16	4.7	16	78	10	75	27	7	16	48	1.74
49814960--49814999	18	2.3	17	86	4	53	12	27	42	17	1.85
49822896--49822960	34	1.9	34	81	6	78	26	1	12	60	1.41
49826288--49826325	19	2.0	19	94	0	67	34	15	26	23	1.95
49833087--49833147	20	3.0	20	76	13	61	57	8	0	34	1.29
49845490--49845521	11	3.0	11	95	4	57	18	9	0	71	1.12
49850690--49850999	47	6.6	47	90	1	467	29	30	8	32	1.87
49850690--49850999	96	3.3	96	90	3	488	29	30	8	32	1.87
49850690--49851000	143	2.2	141	89	1	469	28	30	8	32	1.87
49853621--49853880	40	6.7	40	84	7	340	23	28	23	24	2.00
49853653--49853717	32	2.0	32	82	5	78	24	21	27	26	1.99
49853934--49854008	38	2.0	38	86	5	107	24	26	18	30	1.98
49856143--49856452	47	6.6	47	89	1	458	28	30	9	32	1.88
49856143--49856452	96	3.3	96	89	3	479	28	30	9	32	1.88
49856143--49856452	143	2.2	141	89	1	422	28	30	9	32	1.88
49858757--49858791	7	4.9	7	93	6	61	85	0	14	0	0.59
49858756--49858792	15	2.5	15	90	0	65	86	0	13	0	0.57
49864615--49864773	43	3.7	43	70	9	117	25	16	27	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49882221--49882286	23	3.0	23	80	6	91	40	24	19	15	1.90
49882449--49882490	18	2.2	20	80	16	54	40	16	0	42	1.48
49882672--49882718	15	3.1	15	81	0	67	48	12	2	36	1.53
49884813--49884842	11	2.7	11	94	0	51	26	26	3	43	1.70
49886211--49886244	17	1.9	18	88	5	52	11	32	32	23	1.91
49888153--49888251	47	2.1	47	94	0	171	30	10	13	46	1.75
49890012--49890064	24	2.3	23	81	12	63	45	3	3	47	1.39
49892544--49892579	19	1.9	19	94	5	65	36	0	38	25	1.56
49900501--49900723	40	5.6	40	88	4	310	26	27	22	23	1.99
49903629--49903799	50	3.6	48	83	9	190	24	28	19	28	1.98
49909477--49909528	24	2.2	24	92	0	86	51	7	3	36	1.49
49910713--49910751	13	2.9	13	84	3	51	25	5	2	66	1.25
49910667--49911472	403	2.0	405	95	0	1445	32	12	12	43	1.78
49911617--49911769	77	2.0	77	94	0	270	41	5	20	32	1.74
49920418--49920529	34	3.3	34	82	1	127	40	16	16	26	1.90
49927298--49927334	16	2.5	14	84	16	56	5	27	0	67	1.12
49930067--49930384	47	6.7	46	70	20	169	26	18	29	24	1.98
49930065--49930333	94	2.8	92	81	7	272	25	18	29	25	1.98
49932540--49932591	23	2.3	23	82	0	68	25	26	19	28	1.98
49934062--49934124	25	2.5	25	79	5	74	41	15	9	33	1.80
49936094--49936138	11	3.9	11	80	11	54	35	0	2	62	1.08
49938324--49938396	38	1.9	38	100	0	146	32	17	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49938279--49938440	84	1.9	83	88	3	245	37	16	24	22	1.93
49940234--49940443	40	5.2	40	82	5	233	23	21	26	28	1.99
49948353--49948576	40	5.6	40	85	3	279	24	23	25	26	2.00
49948360--49948576	83	2.7	80	87	5	278	24	23	26	25	2.00
49956225--49956255	16	1.9	16	93	0	53	22	0	6	70	1.09
49956222--49956271	26	2.0	25	84	4	64	28	0	6	66	1.15
49957444--49957482	17	2.2	18	86	9	53	66	2	2	28	1.18
49957596--49957635	19	2.2	19	90	4	64	37	0	5	57	1.21
49957595--49957729	10	13.8	10	69	14	77	35	0	5	57	1.28
49957593--49957637	19	2.4	18	85	10	63	40	0	4	55	1.20
49957595--49957729	30	4.6	30	74	12	111	35	0	5	57	1.28
49960126--49960166	17	2.3	18	80	20	50	58	0	0	41	0.98
49960580--49960616	15	2.4	16	86	8	51	62	2	0	35	1.10
49961868--49961911	20	2.3	19	84	4	52	54	6	0	38	1.27
49962229--49962281	26	2.1	25	82	10	63	56	7	3	32	1.45
49975372--49975402	15	2.1	14	94	5	53	25	12	6	54	1.62
49975395--49975424	14	2.1	15	93	6	53	20	16	6	56	1.62
49975372--49975428	23	2.4	23	91	2	87	24	14	8	52	1.69
49978183--49978251	29	2.4	29	87	0	93	14	20	39	26	1.91
49978183--49978285	29	3.6	29	79	0	89	15	21	36	26	1.93
49984028--49984202	40	4.4	40	90	6	250	23	22	27	26	1.99
49985679--49985777	34	2.9	34	84	0	144	19	20	22	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49986958--49986998	21	2.0	20	85	4	55	53	0	26	19	1.45
49987248--49987347	50	2.0	50	100	0	200	42	16	16	26	1.88
49997915--49998005	37	2.5	37	98	0	173	23	30	19	26	1.98
49998124--49998538	47	8.7	47	94	1	661	28	29	8	32	1.87
49998179--49998538	192	1.9	188	95	2	605	30	28	8	33	1.86
50002142--50002232	45	2.0	45	100	0	182	30	21	10	36	1.88
50006309--50006349	21	2.0	21	95	0	73	41	14	2	41	1.59
50006645--50006750	50	2.1	50	80	3	124	42	21	7	28	1.80
50015735--50015813	39	2.0	39	95	0	140	22	31	24	21	1.98
50016459--50016499	21	2.0	21	95	0	73	41	14	2	41	1.59
50018252--50018330	29	2.7	30	80	13	101	29	30	16	24	1.96
50019867--50019972	50	2.1	50	80	3	124	42	21	7	28	1.80
50026439--50026465	13	2.1	13	100	0	54	14	37	33	14	1.88
50029133--50029167	15	2.3	15	90	0	52	25	0	0	74	0.82
50031869--50031958	45	2.0	45	100	0	180	31	6	24	37	1.81
50032669--50032737	21	3.3	20	73	16	59	34	1	11	52	1.47
50036838--50036876	20	1.9	20	84	5	51	38	0	17	43	1.50
50040297--50040351	24	2.3	24	81	3	58	20	0	25	54	1.44
50042557--50042589	16	2.1	16	100	0	66	12	51	18	18	1.76
50065680--50065711	12	2.6	13	90	9	50	50	25	6	18	1.70
50066274--50066394	44	2.8	42	81	10	147	29	25	19	24	1.99
50066232--50066390	44	3.7	42	76	14	139	28	25	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50068574--50068599	13	2.0	13	100	0	52	15	38	30	15	1.88
50070686--50070849	42	3.7	42	82	8	186	28	27	14	29	1.95
50070772--50070938	47	3.5	47	86	4	185	29	26	15	27	1.96
50070961--50071109	31	4.8	31	89	3	219	24	29	19	26	1.98
50071085--50071213	50	2.5	51	88	5	190	26	22	15	35	1.94
50085519--50085552	17	1.9	17	88	5	50	20	38	23	17	1.93
50088004--50088044	19	2.2	19	86	4	57	51	4	4	39	1.45
50088000--50088039	19	2.1	19	95	0	71	45	2	5	47	1.38
50094744--50094920	48	3.7	47	81	4	176	35	27	16	20	1.94
50094744--50094917	96	1.8	96	82	5	226	35	27	16	21	1.95
50100879--50100904	12	2.2	12	100	0	52	15	30	30	23	1.95
50101731--50101758	13	2.2	13	100	0	56	50	14	14	21	1.78
50102014--50102142	48	2.7	48	81	2	152	36	27	16	19	1.93
50102621--50102682	29	2.2	27	82	5	70	29	25	3	41	1.71
50105828--50106011	40	4.6	40	86	2	237	22	22	26	29	1.99
50106921--50107325	203	2.0	202	99	0	801	32	17	17	32	1.93
50115884--50116141	40	6.5	40	87	4	328	26	28	22	22	1.99
50115884--50116099	79	2.7	79	89	2	310	25	28	22	23	1.99
50115919--50116140	119	1.9	119	88	4	340	27	28	21	21	1.99
50116677--50116821	40	3.7	40	85	2	177	24	22	25	28	1.99
50116669--50116820	80	1.9	79	83	4	198	23	21	25	29	1.99
50121601--50122088	46	10.6	46	90	0	719	40	12	24	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50122384--50122416	17	2.0	17	88	5	50	45	0	18	36	1.49
50129279--50129397	60	2.0	61	81	5	143	27	25	19	27	1.99
50130081--50130113	8	4.2	8	88	3	50	15	24	15	45	1.84
50134470--50134500	16	1.9	16	93	0	53	35	0	22	41	1.54
50143472--50143510	21	1.9	21	84	5	53	12	38	25	23	1.90
50156569--50156611	15	2.9	15	92	0	68	51	13	13	20	1.76
50167032--50167061	10	3.0	10	95	0	51	60	23	0	16	1.36
50167990--50168047	23	2.5	23	85	0	80	37	18	18	24	1.94
50168013--50168115	44	2.3	44	78	5	100	39	18	23	18	1.92
50168031--50168150	22	5.5	22	72	5	100	40	16	25	18	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259