genome.fa.s9.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  139  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45273678--45273781	48	2.2	47	81	10	113	19	29	21	29	1.97
45275374--45275481	38	2.8	38	90	0	153	28	27	23	20	1.99
45279730--45279878	44	3.5	41	77	14	135	30	24	19	26	1.98
45279764--45279891	44	3.0	42	78	14	129	32	23	19	24	1.97
45279722--45279883	43	3.8	43	78	11	145	31	24	19	24	1.98
45281593--45281682	47	1.9	47	83	0	117	40	14	22	23	1.90
45281621--45281683	23	2.7	24	80	5	74	39	15	20	23	1.91
45281605--45281692	24	3.7	24	75	6	81	38	15	20	25	1.92
45287253--45287302	19	2.5	20	87	12	77	32	0	4	64	1.12
45287264--45287299	9	3.9	9	88	3	54	25	0	5	69	1.10
45287311--45287382	10	7.5	10	73	13	62	36	0	5	58	1.22
45287319--45287377	20	3.2	18	88	11	93	37	0	5	57	1.21
45287337--45287394	11	5.5	11	78	12	59	34	0	3	62	1.12
45287653--45287712	26	2.3	26	80	11	68	30	1	1	66	1.11
45288048--45288256	104	2.0	104	100	0	418	43	17	3	35	1.67
45293106--45293144	17	2.4	16	83	8	51	23	0	5	71	1.05
45295417--45295473	21	2.7	21	88	0	87	52	5	15	26	1.64
45295855--45295932	37	2.1	37	92	0	129	39	5	17	37	1.72
45295872--45295932	21	3.1	21	61	29	53	39	4	16	39	1.70
45299196--45299289	6	15.3	6	72	19	70	19	15	15	48	1.81
45299196--45299280	25	3.4	25	77	7	86	18	16	15	49	1.80
45301238--45301332	27	3.5	26	80	8	100	42	18	8	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45301339--45301508	27	6.3	27	84	0	178	35	22	5	35	1.79
45301337--45301494	81	2.0	81	84	0	208	34	22	6	36	1.81
45301438--45301546	27	4.0	27	78	4	112	41	21	8	29	1.82
45303087--45303189	29	3.6	29	93	2	154	25	16	33	25	1.96
45311027--45311187	29	5.6	29	94	1	261	24	16	32	25	1.96
45312831--45312922	25	3.8	24	85	9	116	34	17	19	28	1.94
45313340--45313395	12	4.6	12	74	12	51	19	12	16	51	1.75
45313380--45313425	24	1.9	24	86	0	65	21	13	10	54	1.69
45320834--45320940	27	4.0	27	76	10	103	39	22	21	16	1.92
45336225--45336402	27	6.6	27	83	3	205	26	15	28	29	1.96
45336226--45336381	82	1.9	81	88	3	233	26	15	28	29	1.96
45336222--45336402	82	2.2	81	83	2	229	27	15	27	29	1.96
45344316--45344493	27	6.6	27	83	3	205	26	15	28	29	1.96
45344317--45344472	82	1.9	81	88	3	233	26	15	28	29	1.96
45344313--45344493	82	2.2	81	83	2	229	27	15	27	29	1.96
45349772--45349949	27	6.6	27	84	3	205	29	28	15	26	1.96
45349793--45349948	82	1.9	81	88	3	233	29	28	15	26	1.96
45357871--45358047	27	6.5	27	84	3	203	29	27	15	27	1.96
45357891--45358046	82	1.9	81	88	3	233	29	28	15	26	1.96
45361006--45361183	27	6.6	27	83	3	205	27	15	28	29	1.96
45361007--45361162	82	1.9	81	86	3	224	27	15	28	28	1.96
45361003--45361183	82	2.2	81	82	2	220	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45368897--45369074	27	6.6	27	83	3	205	27	15	28	29	1.96
45368898--45369053	82	1.9	81	86	3	224	27	15	28	28	1.96
45368894--45369074	82	2.2	81	82	2	220	27	15	27	29	1.96
45373794--45373855	28	2.2	28	91	2	99	30	30	6	32	1.83
45376235--45376358	57	2.2	57	85	5	162	32	20	11	36	1.88
45376253--45376380	57	2.2	59	78	2	143	29	20	11	38	1.88
45377054--45377087	15	2.2	16	89	5	52	52	29	5	11	1.61
45383576--45383627	27	1.9	27	100	0	104	48	1	19	30	1.60
45384605--45384644	13	3.1	13	100	0	80	45	22	0	32	1.53
45385379--45385403	11	2.3	11	100	0	50	60	0	32	8	1.26
45386397--45386425	4	7.2	4	100	0	58	75	0	0	24	0.80
45387364--45387393	2	15.5	2	93	6	53	53	0	0	46	1.00
45387793--45387923	67	2.0	67	90	3	210	34	13	12	38	1.84
45387970--45388048	31	2.6	30	86	6	113	31	5	12	50	1.62
45388118--45388176	19	2.9	19	75	25	59	42	6	0	50	1.28
45388108--45388193	10	8.9	9	69	26	52	43	4	1	51	1.30
45388129--45388193	30	2.2	30	83	5	78	43	6	1	49	1.37
45388475--45388515	17	2.3	18	87	8	57	31	0	2	65	1.05
45388474--45388516	18	2.2	20	80	12	54	34	0	2	62	1.08
45389376--45389413	18	2.1	18	85	9	51	50	7	0	42	1.31
45391985--45392011	2	13.5	2	100	0	54	51	0	0	48	1.00
45392254--45392319	33	2.0	34	85	8	91	27	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45392504--45392563	27	2.2	27	78	0	66	40	20	21	18	1.92
45392716--45392824	27	4.1	27	78	5	114	25	18	19	36	1.94
45394002--45394043	20	2.0	21	95	4	77	66	4	23	4	1.30
45395940--45396099	84	1.9	86	81	10	195	44	1	3	50	1.28
45403697--45403731	18	2.0	18	88	5	54	60	2	0	37	1.12
45405023--45405081	27	2.2	27	87	3	84	52	3	13	30	1.57
45405235--45405319	27	3.4	25	71	17	70	57	3	9	29	1.47
45405603--45405640	17	2.2	17	90	0	58	63	5	0	31	1.17
45405619--45405672	21	2.5	20	80	11	54	61	0	1	37	1.07
45407486--45407603	45	2.6	45	78	2	121	28	21	18	31	1.97
45407779--45407916	44	3.1	44	68	10	109	28	21	16	33	1.95
45410834--45410893	30	2.0	30	83	6	77	40	6	25	28	1.80
45411309--45411491	47	3.9	47	76	13	191	24	20	26	28	1.99
45418109--45418166	30	1.9	30	82	6	73	37	6	29	25	1.82
45418590--45418766	47	3.8	47	78	12	193	22	20	27	29	1.98
45426172--45426215	19	2.2	20	88	4	63	47	4	18	29	1.68
45430294--45430362	27	2.7	25	74	14	61	57	4	10	27	1.50
45430646--45430685	17	2.4	17	82	0	53	60	5	0	35	1.19
45434997--45435104	26	4.2	26	89	0	171	33	6	23	37	1.80
45442106--45442211	26	4.1	26	93	0	185	33	7	23	35	1.83
45461250--45461332	3	27.7	3	75	18	59	30	3	2	63	1.24
45461441--45461478	3	12.7	3	88	0	58	36	2	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45461646--45461670	3	8.3	3	100	0	50	32	0	0	68	0.90
45461854--45461902	22	2.3	22	85	3	73	22	12	8	57	1.61
45461894--45461987	3	32.3	3	75	10	72	27	7	0	64	1.20
45462069--45462102	12	2.8	12	90	0	50	44	8	2	44	1.50
45466645--45466687	16	2.5	19	75	25	58	20	4	2	72	1.14
45466633--45466698	29	2.3	29	84	12	91	21	6	3	69	1.24
45477932--45478109	27	6.6	27	84	3	205	29	28	15	26	1.96
45477953--45478108	82	1.9	81	88	3	233	29	28	15	26	1.96
45484221--45484252	13	2.5	13	94	0	55	18	12	3	65	1.38
45484153--45484329	90	2.0	89	84	3	230	26	16	19	37	1.92
45484249--45484402	76	2.0	77	88	1	229	29	16	19	34	1.94
45486294--45486379	3	28.7	3	75	17	65	30	3	2	63	1.23
45486481--45486514	9	3.8	9	88	0	50	41	2	0	55	1.15
45486368--45486645	149	1.9	151	86	4	402	31	3	6	58	1.41
45486681--45486707	3	9.0	3	100	0	54	33	0	0	66	0.92
45486869--45486917	22	2.3	22	82	3	64	22	10	8	59	1.56
45486909--45487072	3	56.0	3	69	11	74	29	8	1	60	1.34
45487087--45487120	12	2.8	12	90	0	50	44	8	2	44	1.50
45490922--45490979	30	2.0	29	82	3	71	43	1	22	32	1.64
45491646--45491688	16	2.5	19	75	25	58	20	4	2	72	1.14
45491634--45491699	29	2.3	29	82	12	82	22	6	1	69	1.19
45493551--45493579	14	2.0	15	93	6	51	27	0	20	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45494702--45494858	43	3.7	41	71	15	113	25	17	27	29	1.98
45501200--45501887	343	2.0	343	99	0	1358	34	18	17	29	1.94
45503173--45503229	30	1.9	30	85	0	78	24	36	29	8	1.86
45508772--45509075	44	6.6	44	67	14	132	30	19	19	30	1.97
45508815--45509121	94	3.3	94	91	0	470	29	19	18	31	1.96
45508582--45508981	138	2.9	137	75	7	389	30	18	20	30	1.96
45511298--45511360	21	3.1	21	71	13	69	12	25	23	38	1.90
45511280--45511360	39	2.1	39	92	0	135	13	27	23	35	1.92
45511295--45511375	39	2.1	39	88	0	117	13	25	25	34	1.93
45512413--45512450	19	2.0	20	90	10	62	65	28	0	5	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259