genome.fa.s9.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  114  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36981731--36981782	25	2.1	25	88	0	77	34	26	7	30	1.85
36982470--36982516	23	2.0	23	95	0	85	55	4	0	40	1.19
36983309--36983365	28	2.0	28	96	0	105	31	21	24	22	1.98
36998774--36998956	30	6.1	29	78	11	163	48	14	16	19	1.81
36998795--36998931	6	22.8	6	81	14	167	49	14	16	19	1.79
36999088--36999189	27	3.8	26	83	5	105	37	19	23	19	1.94
36999347--36999411	22	3.0	22	80	8	78	33	23	23	20	1.97
36999855--37000396	27	20.5	27	85	4	678	25	20	20	33	1.97
37000132--37000171	19	2.1	19	100	0	80	27	25	20	27	1.99
37000357--37000513	81	1.9	81	79	5	174	28	10	22	38	1.87
37000383--37000786	27	15.1	27	78	5	203	32	7	24	35	1.84
37000382--37000586	81	2.6	80	82	3	225	27	8	23	40	1.83
37000590--37000762	81	2.1	81	92	2	285	37	6	25	30	1.82
37000590--37000762	54	3.2	54	88	1	258	37	6	25	30	1.82
37008994--37009058	29	2.2	29	83	0	76	30	18	24	26	1.98
37009004--37009068	29	2.2	29	91	0	103	27	16	26	29	1.97
37012792--37012851	27	2.3	27	82	2	77	41	18	21	18	1.90
37012988--37013158	27	6.4	26	78	5	171	26	21	16	35	1.94
37012988--37013158	54	3.2	54	86	2	220	26	21	16	35	1.94
37012988--37013158	81	2.1	80	83	5	211	26	21	16	35	1.94
37016636--37016865	50	4.6	50	79	7	225	26	18	24	29	1.98
37024108--37024289	101	1.8	100	83	9	244	25	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37024112--37024338	50	4.6	48	76	11	163	25	16	26	32	1.96
37026067--37026272	27	7.6	27	81	4	227	24	20	19	34	1.96
37026046--37026275	54	4.3	52	86	4	253	25	20	18	35	1.95
37026066--37026273	81	2.6	80	85	4	274	24	20	19	35	1.96
37034813--37034869	27	2.1	27	90	3	89	33	17	19	29	1.95
37042436--37042537	28	3.6	28	86	5	143	36	10	23	29	1.89
37042431--37042537	56	1.9	56	90	0	169	35	10	24	29	1.88
37052222--37052253	15	2.1	16	88	11	50	25	0	21	53	1.46
37059584--37059611	9	3.1	9	100	0	56	75	14	0	10	1.06
37066827--37066952	54	2.3	54	93	0	216	39	23	7	30	1.81
37066828--37067049	27	8.2	27	79	4	196	39	20	8	31	1.82
37066828--37067040	81	2.6	81	85	2	259	38	21	7	31	1.82
37067052--37067249	27	7.3	27	83	1	209	31	22	6	40	1.78
37067037--37067249	54	3.9	54	87	4	241	31	20	6	41	1.77
37067080--37067228	80	1.9	80	88	0	226	29	22	8	40	1.82
37067754--37067822	6	11.3	6	78	9	68	21	15	14	47	1.81
37069725--37069946	27	8.2	27	86	0	282	40	19	7	32	1.79
37069706--37069984	81	3.5	79	85	3	317	40	20	7	32	1.80
37069725--37070002	27	10.3	27	81	6	276	40	20	7	32	1.79
37069988--37070254	27	9.9	27	87	0	309	30	21	7	40	1.80
37069953--37070254	81	3.7	81	84	0	228	31	22	6	39	1.80
37070661--37070723	6	10.3	6	77	16	67	19	14	15	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37074113--37074157	20	2.2	20	88	0	63	37	11	2	48	1.51
37078692--37078723	14	2.4	13	90	10	55	62	12	6	18	1.50
37082205--37082324	35	3.4	36	74	13	108	40	18	10	30	1.83
37085887--37085959	27	2.7	27	93	2	110	31	27	13	27	1.94
37085887--37085984	28	3.5	28	88	2	135	31	28	13	26	1.94
37093868--37093934	18	3.7	18	84	4	66	47	11	13	26	1.77
37094260--37094443	27	6.8	27	78	6	185	40	21	15	21	1.91
37094260--37094443	54	3.4	53	83	3	224	40	21	15	21	1.91
37094260--37094445	81	2.3	81	87	1	257	40	21	15	22	1.91
37094559--37094596	17	2.2	17	86	9	51	18	42	26	13	1.87
37094562--37094603	18	2.3	18	76	8	50	21	40	26	11	1.88
37100804--37100908	53	2.0	53	86	0	147	19	25	18	37	1.94
37106668--37106737	21	3.2	21	67	25	63	18	14	25	41	1.88
37115436--37115643	55	3.8	53	81	6	222	22	26	16	34	1.95
37115436--37115636	108	1.8	110	88	4	309	22	26	17	33	1.96
37122707--37122737	16	1.9	16	93	0	53	35	22	0	41	1.54
37122704--37122743	20	2.0	20	85	0	53	37	22	0	40	1.54
37122913--37123164	55	4.7	54	80	9	261	21	25	17	35	1.95
37122960--37123160	108	1.8	110	89	4	318	22	25	17	33	1.96
37123503--37123559	30	1.9	30	88	0	87	29	21	7	42	1.79
37137860--37138078	27	8.1	27	79	4	201	32	10	20	36	1.86
37137857--37138078	54	4.1	52	80	8	223	33	10	19	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37137888--37138078	81	2.4	81	83	5	233	32	9	20	37	1.86
37138149--37138214	29	2.3	29	94	0	114	22	24	25	27	2.00
37151229--37151400	93	1.8	93	90	2	274	30	27	19	22	1.98
37151221--37151397	46	3.8	46	75	14	166	31	27	18	23	1.98
37151264--37151415	46	3.3	46	70	14	123	31	26	17	24	1.97
37166745--37166877	27	5.0	28	78	10	145	30	10	19	39	1.85
37167041--37167078	19	2.0	19	85	10	51	23	36	26	13	1.91
37188850--37188935	38	2.3	38	93	0	145	19	22	26	31	1.98
37188928--37189145	45	4.9	45	88	4	291	23	22	28	26	1.99
37192129--37192267	17	7.9	17	67	24	58	61	0	2	36	1.08
37192126--37192283	25	6.6	25	74	13	122	61	0	2	36	1.10
37192126--37192274	19	7.7	20	73	16	111	61	0	2	36	1.08
37192102--37192282	22	8.4	22	71	17	112	61	0	3	34	1.17
37192144--37192282	45	3.1	44	74	17	128	61	0	2	35	1.11
37192235--37192289	18	3.1	16	78	17	56	61	0	3	34	1.13
37192900--37192924	12	2.1	12	100	0	50	44	0	8	48	1.32
37195356--37195497	25	5.7	25	75	11	105	61	0	2	35	1.08
37195356--37195477	8	14.9	8	73	14	97	63	0	1	35	1.05
37195332--37195513	23	8.4	22	72	16	105	61	0	3	34	1.16
37195466--37195517	18	2.9	17	75	11	50	57	0	3	38	1.17
37207462--37207572	49	2.3	49	91	0	177	37	16	21	24	1.93
37240088--37240126	16	2.4	17	91	8	64	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37241488--37241518	15	2.1	15	93	0	53	19	0	25	54	1.44
37241547--37241590	22	2.0	22	100	0	88	63	9	4	22	1.42
37242119--37242205	45	1.9	45	83	0	111	21	16	28	33	1.95
37248699--37248732	14	2.3	15	90	5	52	38	2	2	55	1.30
37274165--37274205	21	2.0	21	95	4	75	53	19	0	26	1.45
37276873--37277047	46	3.8	46	76	13	187	29	29	20	20	1.98
37276880--37277052	93	1.9	93	92	0	292	28	30	20	20	1.98
37283643--37283747	18	5.9	18	76	2	104	40	15	8	35	1.78
37283643--37283750	36	3.0	36	83	1	119	40	14	8	36	1.77
37283757--37283830	18	4.1	18	69	10	60	45	14	9	29	1.77
37283940--37284060	53	2.3	53	82	0	161	42	19	18	19	1.89
37286182--37286227	20	2.3	20	81	3	58	28	23	17	30	1.97
37289630--37289689	30	2.0	30	96	0	111	31	20	15	33	1.93
37292963--37293061	40	2.4	40	83	3	126	53	8	20	18	1.69
37292963--37293091	41	3.2	40	82	3	141	52	8	20	18	1.71
37294218--37294324	55	1.9	54	81	7	126	27	30	24	17	1.97
37295189--37295508	46	7.0	46	92	0	498	23	23	14	38	1.91
37300491--37300644	42	3.7	41	77	3	137	27	23	16	32	1.96
37306198--37306302	25	4.2	25	70	12	65	33	19	25	21	1.97
37306870--37306908	5	7.6	5	82	5	51	41	17	2	38	1.64
37323096--37323138	17	2.6	17	82	7	54	32	0	2	65	1.06
37327249--37327292	21	2.0	21	86	8	61	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37335142--37335202	30	2.0	30	87	0	86	31	24	6	37	1.81
37338512--37338674	76	2.1	76	85	0	209	36	23	18	21	1.95
37342560--37342680	50	2.4	52	88	2	183	37	14	15	33	1.88
37342696--37342784	39	2.3	39	92	0	151	47	15	8	28	1.76
37349425--37349468	20	2.1	21	87	4	63	43	6	15	34	1.74
37351696--37351852	27	5.8	27	80	12	171	35	22	22	18	1.95
37351714--37351852	54	2.6	54	93	2	235	35	24	22	17	1.95
37353449--37353556	26	4.2	26	93	0	189	36	24	7	32	1.83
37358571--37358604	17	2.0	17	100	0	68	35	11	5	47	1.65
37362619--37362829	46	4.6	44	70	16	124	28	19	27	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259