Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  96  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31264420--31264466
23
2.1
23
84
7
62
51
12
4
31
1.59
31277279--31277320
15
2.7
16
96
3
77
19
11
4
64
1.44
31277357--31277402
12
3.8
12
91
0
65
21
2
4
71
1.14
31277362--31277402
13
3.2
13
89
3
57
17
2
4
75
1.08
31279892--31279938
23
2.1
23
84
7
62
51
12
4
31
1.59
31282062--31282107
24
1.9
25
83
16
62
17
15
10
56
1.67
31292640--31292688
10
4.9
10
78
9
55
26
14
30
28
1.95
31294719--31294751
12
2.8
12
95
0
57
81
3
6
9
0.95
31304101--31304197
30
3.2
30
75
2
106
28
14
26
29
1.95
31306378--31306408
12
2.6
12
100
0
62
25
16
12
45
1.83
31309167--31309263
30
3.2
30
75
2
106
28
14
26
29
1.95
31311586--31311630
11
4.0
11
88
5
72
73
6
2
17
1.15
31311589--31311634
12
3.9
12
85
5
67
73
4
4
17
1.15
31311586--31311633
23
2.1
23
96
0
87
70
6
2
20
1.19
31311670--31311709
15
2.6
15
96
4
71
62
5
12
20
1.48
31317419--31317461
18
2.4
18
88
0
59
9
13
6
69
1.35
31322861--31322914
24
2.2
25
78
15
60
11
22
3
62
1.43
31333032--31333056
13
1.9
13
100
0
50
36
16
32
16
1.90
31339509--31339548
18
2.2
18
86
4
53
12
27
0
60
1.33
31339621--31339681
18
3.4
17
80
11
59
8
19
3
68
1.29
31340611--31340660
13
3.8
13
86
7
75
22
12
0
66
1.24
31340611--31340654
12
3.6
12
90
6
70
18
9
0
72
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31340699--31340741
11
3.9
11
87
0
59
16
6
9
67
1.40
31349371--31349417
15
3.1
15
84
9
60
70
0
17
12
1.17
31349445--31349520
12
6.3
12
68
17
50
61
1
25
11
1.38
31349468--31349501
15
2.3
15
89
0
50
67
0
29
2
1.05
31351380--31351428
10
4.9
10
78
9
55
26
30
16
26
1.97
31351380--31351426
20
2.3
20
89
7
69
25
31
17
25
1.97
31354801--31354897
30
3.2
30
75
2
97
28
25
15
29
1.96
31365007--31365060
24
2.2
25
78
15
60
11
22
3
62
1.43
31367051--31367128
27
2.9
27
79
9
72
12
11
6
69
1.36
31373168--31373203
6
6.0
6
93
0
54
38
27
0
33
1.57
31373211--31373255
20
2.2
20
84
4
54
8
26
0
64
1.23
31374060--31374130
28
2.4
29
84
11
83
11
9
1
77
1.06
31374176--31374218
12
3.5
12
81
6
59
16
2
4
76
1.05
31374175--31374218
13
3.5
13
81
6
63
15
2
4
77
1.04
31374175--31374230
25
2.3
25
90
3
87
17
1
3
76
1.01
31380951--31380994
21
2.1
21
100
0
88
13
36
9
40
1.76
31381099--31381261
45
3.6
44
74
11
159
28
30
19
22
1.97
31381099--31381272
46
3.8
45
77
12
176
28
29
20
21
1.98
31381149--31381291
46
3.1
44
70
22
107
28
28
20
22
1.98
31384668--31384728
24
2.7
23
72
25
58
67
3
22
6
1.29
31388850--31388912
33
1.9
33
84
12
85
12
26
6
53
1.62
31388909--31388965
14
4.1
14
75
16
57
8
17
1
71
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31388927--31389016
6
14.7
6
71
6
65
5
18
3
72
1.19
31388927--31389049
63
2.0
63
80
3
140
7
21
2
69
1.25
31395579--31395677
11
8.6
11
84
6
119
62
9
6
22
1.46
31397741--31397784
16
2.9
15
80
19
56
81
0
11
6
0.86
31400754--31400924
93
1.8
93
92
0
288
27
29
22
21
1.99
31400750--31400921
46
3.7
46
77
10
188
28
28
22
20
1.99
31403306--31403382
15
5.2
15
76
13
70
57
14
18
10
1.65
31406317--31406478
46
3.5
45
74
14
168
29
28
20
21
1.98
31406317--31406499
46
4.0
46
73
10
142
28
27
20
22
1.99
31410381--31410530
67
2.2
67
81
8
171
32
17
28
21
1.96
31410405--31410588
67
2.8
64
77
8
194
29
17
29
22
1.97
31422067--31422143
15
5.3
15
72
12
54
75
0
18
6
1.01
31422090--31422167
24
3.4
24
75
19
69
75
1
17
5
1.05
31422067--31422189
57
2.2
56
81
10
135
73
0
18
7
1.11
31423178--31423338
45
3.6
45
87
3
211
27
26
21
24
1.99
31424995--31425079
30
2.8
30
76
0
98
28
15
25
30
1.96
31426055--31426120
20
3.2
20
70
6
53
19
28
18
33
1.95
31429156--31429212
10
5.6
10
83
4
69
10
22
21
45
1.82
31434054--31434102
21
2.4
21
83
10
57
28
12
28
30
1.93
31439203--31439250
14
3.4
14
88
0
69
18
29
6
45
1.74
31439632--31439696
30
2.2
30
83
5
78
15
20
0
64
1.29
31439650--31439702
18
2.9
18
80
2
61
11
18
1
67
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31439672--31439696
12
2.1
12
100
0
50
8
16
0
76
1.02
31439699--31439726
12
2.3
12
100
0
56
21
14
14
50
1.78
31439777--31439833
5
11.0
5
75
20
55
1
17
3
77
1.00
31439777--31439833
16
3.7
14
82
15
60
1
17
3
77
1.00
31439777--31439844
21
3.2
21
76
15
61
1
17
4
76
1.03
31441970--31442008
20
2.0
20
89
0
60
46
15
0
38
1.46
31450675--31450705
12
2.6
12
100
0
62
25
16
12
45
1.83
31450766--31450815
6
8.2
6
81
16
50
2
20
2
76
0.99
31450755--31450825
37
1.9
37
86
11
101
2
18
2
76
1.04
31450751--31450811
16
3.8
16
77
14
63
3
19
1
75
1.03
31451734--31451766
12
2.8
12
100
0
66
12
0
6
81
0.85
31453432--31453478
19
2.5
19
100
0
94
29
14
21
34
1.93
31454851--31454931
24
3.4
24
86
6
94
25
23
20
29
1.99
31454980--31455038
21
2.9
21
89
2
84
32
20
10
37
1.86
31454980--31455046
10
6.6
10
83
6
82
32
19
10
37
1.86
31457309--31457362
12
4.6
12
82
17
69
70
7
5
16
1.30
31459478--31459519
12
3.5
12
90
0
66
78
2
4
14
1.01
31461778--31461819
17
2.4
18
80
7
52
57
4
23
14
1.56
31465726--31465772
20
2.3
20
85
0
67
21
12
36
29
1.91
31466085--31466132
24
2.0
24
95
0
87
29
18
25
27
1.98
31467897--31467959
21
3.0
19
73
17
54
76
3
15
4
1.09
31467904--31467959
12
5.2
11
74
18
55
76
3
16
3
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31468009--31468038
12
2.5
12
100
0
60
43
13
16
26
1.85
31468032--31468121
29
3.1
29
70
13
76
62
1
20
16
1.39
31470236--31470332
30
3.2
31
73
5
101
27
28
15
27
1.96
31471232--31471280
20
2.3
20
82
10
53
32
8
14
44
1.74
31473843--31473960
58
2.0
58
100
0
236
33
19
20
27
1.97
31477695--31477736
14
3.0
14
89
0
57
40
4
33
21
1.74
31484396--31484657
39
6.6
39
87
7
320
24
27
22
25
2.00
31492407--31492629
79
2.8
78
80
9
247
25
26
21
26
2.00
31492407--31492629
39
5.7
40
84
8
248
25
26
21
26
2.00
31507509--31507625
12
8.5
13
70
21
71
70
1
21
6
1.20
31507583--31507621
13
2.9
13
85
14
53
69
0
23
7
1.14
31507584--31507621
14
2.7
15
88
11
55
71
0
23
5
1.07
31523207--31523250
16
2.9
16
80
19
58
6
11
0
81
0.86
31525312--31525409
11
8.6
11
81
9
117
22
6
9
62
1.47
31525311--31525410
21
4.3
24
87
8
111
22
6
9
63
1.46
31531869--31531957
6
14.5
6
71
9
63
70
3
20
5
1.22
31531869--31531957
13
7.2
12
77
6
63
70
3
20
5
1.22
31531909--31531963
26
2.2
25
87
9
76
69
1
20
9
1.25
31531909--31531981
13
5.9
12
75
7
58
64
2
21
10
1.38
31531841--31531980
61
2.3
61
76
11
144
65
3
21
9
1.36
31531960--31532022
33
1.9
33
84
12
85
53
6
26
12
1.62
31533782--31533835
20
2.7
20
82
0
63
24
20
18
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31533782--31533855
30
2.5
30
86
8
98
21
20
18
39
1.93
31533782--31533846
20
3.2
20
71
16
53
23
21
16
38
1.93
31536561--31536592
16
1.9
16
93
6
55
0
21
0
78
0.76
31540020--31540195
46
3.8
45
78
11
196
21
19
29
28
1.98
31540016--31540187
93
1.8
93
92
2
292
21
20
30
27
1.98
31540301--31540344
21
2.1
21
100
0
88
40
9
36
13
1.76
31546935--31546992
14
4.6
12
80
14
55
75
1
3
18
1.03
31546946--31546981
15
2.5
15
95
4
65
75
0
5
19
1.00
31546946--31546992
14
3.4
14
84
0
58
74
2
4
19
1.09
31547036--31547106
29
2.3
32
88
7
103
76
2
11
9
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259