genome.fa.s9.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  150  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49114457--49114513	27	2.1	27	90	0	87	49	0	0	50	1.00
49114460--49114515	7	8.4	7	78	11	64	51	0	0	48	1.00
49115691--49115758	22	3.0	22	85	6	93	16	22	19	42	1.89
49122562--49122675	43	2.7	43	77	0	138	28	15	24	31	1.96
49135364--49135400	18	2.1	18	100	0	74	67	5	10	16	1.38
49136263--49136303	19	2.2	19	100	0	82	39	4	9	46	1.58
49142291--49142327	20	1.9	18	89	10	56	43	0	21	35	1.53
49154222--49154251	16	1.9	16	93	6	53	30	0	20	50	1.49
49155054--49155239	103	1.8	103	91	0	309	23	28	30	18	1.97
49160665--49160729	28	2.4	28	94	2	114	69	9	12	9	1.37
49166148--49166186	19	2.0	21	85	10	55	23	12	17	46	1.83
49171287--49171506	40	5.6	40	84	4	277	26	28	22	22	1.99
49171286--49171506	80	2.8	80	86	4	306	26	28	22	22	1.99
49179138--49179317	78	2.3	80	89	3	276	27	28	22	21	1.99
49179138--49179359	40	5.6	41	83	8	257	26	28	23	21	1.99
49188854--49188898	20	2.2	20	88	0	63	20	22	37	20	1.94
49192427--49192821	47	8.4	47	92	0	637	32	9	29	28	1.88
49192940--49193018	37	2.1	37	88	4	115	25	18	30	25	1.98
49197989--49198075	43	2.0	43	90	0	138	29	17	17	35	1.93
49200780--49200837	23	2.5	23	83	5	73	39	17	17	25	1.91
49204436--49204481	21	2.2	21	92	0	74	50	2	13	34	1.53
49204769--49204877	24	4.7	24	75	12	93	31	22	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49204811--49204877	24	2.8	24	88	0	107	31	20	13	34	1.92
49207163--49207481	48	6.6	48	84	0	377	25	26	18	30	1.98
49211784--49211931	47	3.1	47	79	6	113	35	7	28	29	1.84
49211854--49212037	98	1.9	96	91	4	298	36	7	26	29	1.84
49211853--49212037	48	3.8	48	88	5	282	36	7	25	30	1.84
49212184--49212298	37	3.1	37	88	0	158	24	18	28	28	1.98
49213560--49213831	40	6.8	40	86	0	382	25	20	27	26	1.99
49217985--49218081	47	2.1	47	82	0	113	34	7	28	29	1.84
49218055--49218238	98	1.9	96	87	4	271	36	7	26	29	1.84
49218054--49218238	48	3.8	48	86	5	264	36	7	26	29	1.84
49218385--49218492	37	2.9	37	94	0	180	23	18	31	26	1.97
49223557--49223620	31	2.1	31	93	0	110	23	23	15	37	1.93
49223813--49223952	23	6.0	23	84	5	165	30	23	19	26	1.98
49224003--49224069	20	3.3	20	93	0	116	32	20	11	34	1.90
49224003--49224058	11	5.5	11	71	16	57	32	19	12	35	1.89
49227704--49227875	93	1.8	93	92	0	290	27	27	22	22	1.99
49227705--49227872	46	3.6	46	76	10	180	28	26	22	22	1.99
49230264--49230313	15	3.4	15	86	2	66	60	12	18	10	1.59
49230275--49230322	15	3.2	15	79	5	53	56	14	16	12	1.68
49233252--49233423	46	3.8	45	77	13	163	29	29	19	20	1.97
49233259--49233429	92	1.9	92	88	0	261	29	29	20	21	1.98
49235160--49235217	29	2.0	28	83	12	73	27	10	15	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49235910--49235967	28	2.2	26	84	6	71	43	1	3	51	1.28
49238242--49238289	19	2.5	19	86	6	53	35	25	4	35	1.75
49243105--49243135	12	2.6	12	89	0	53	12	19	41	25	1.87
49246091--49246115	2	12.5	2	100	0	50	52	0	48	0	1.00
49248009--49248048	19	2.1	19	100	0	80	47	10	0	42	1.37
49249374--49249504	66	1.9	69	80	9	151	33	15	29	21	1.94
49254135--49254612	47	10.1	47	94	0	785	32	9	29	28	1.88
49254731--49254809	37	2.1	37	88	4	115	25	18	30	25	1.98
49263151--49263341	56	3.4	55	87	10	271	34	21	14	29	1.93
49263955--49263985	15	2.1	15	93	0	53	54	25	0	19	1.44
49275266--49275484	40	5.5	40	90	2	336	26	27	22	23	1.99
49282937--49283115	40	4.5	40	88	2	256	26	26	24	22	2.00
49290227--49290410	40	4.6	41	81	12	199	25	21	27	25	2.00
49290227--49290410	79	2.3	81	81	11	213	25	21	27	25	2.00
49290279--49290443	79	2.1	79	81	8	185	26	20	27	25	1.99
49298162--49298344	39	4.6	41	81	12	199	25	21	27	25	2.00
49298162--49298344	79	2.3	80	81	12	211	25	21	27	25	2.00
49298214--49298377	79	2.1	78	81	10	183	26	20	27	25	1.99
49311201--49311384	40	4.6	41	81	12	208	25	22	27	25	2.00
49311201--49311384	79	2.3	81	82	11	222	25	22	27	25	2.00
49311253--49311417	79	2.1	79	82	8	194	26	21	27	24	1.99
49319140--49319323	40	4.6	41	81	12	199	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49319140--49319323	79	2.3	81	81	11	213	25	21	27	25	2.00
49319192--49319356	79	2.1	79	81	8	185	26	20	27	25	1.99
49335470--49335498	8	3.6	8	100	0	58	13	0	51	34	1.42
49342259--49342312	27	2.0	26	92	3	90	33	14	16	35	1.90
49350032--49350088	27	2.1	27	93	0	96	29	19	17	33	1.95
49351492--49351611	46	2.6	46	93	0	204	21	23	27	27	1.99
49353433--49353484	27	1.9	27	88	0	77	30	7	13	48	1.71
49354723--49354749	8	3.4	8	100	0	54	14	0	51	33	1.43
49358735--49358766	9	3.6	9	95	0	55	71	0	21	6	1.07
49360983--49361023	22	1.9	21	90	5	64	51	4	0	43	1.23
49365273--49365319	20	2.3	20	78	7	51	42	0	4	53	1.20
49365287--49365327	14	3.1	14	73	20	52	41	0	0	58	0.98
49366680--49366736	3	19.0	3	78	20	57	63	5	0	31	1.17
49366814--49366893	3	26.3	3	72	20	53	65	1	3	30	1.18
49366812--49366890	12	6.5	12	74	12	72	64	1	3	30	1.19
49367221--49367265	21	2.2	20	88	8	63	62	26	4	6	1.39
49367221--49367297	23	3.4	22	81	10	75	58	28	3	9	1.47
49367813--49368232	44	9.6	44	76	8	363	26	25	18	30	1.98
49367812--49368291	176	2.7	176	93	0	811	26	24	18	30	1.98
49367777--49368182	132	3.1	132	85	3	480	26	24	18	30	1.98
49368344--49368542	68	2.9	68	88	2	294	26	21	23	28	1.99
49368598--49369505	43	20.8	43	72	10	436	21	21	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49368647--49369509	132	6.6	131	83	6	1016	20	21	20	36	1.95
49368561--49368891	175	1.9	176	83	3	434	21	19	21	37	1.94
49368647--49369509	261	3.3	260	89	3	1223	20	21	20	36	1.95
49369569--49369695	66	1.9	66	91	0	209	37	9	19	33	1.84
49370875--49370910	6	6.0	6	100	0	72	0	33	16	50	1.46
49373699--49373745	19	2.5	20	89	6	71	42	8	21	27	1.81
49376563--49376645	3	27.3	3	73	18	66	65	1	2	31	1.13
49376561--49376642	12	6.5	12	78	12	76	64	1	2	31	1.14
49376563--49376644	18	4.4	17	82	15	83	64	1	2	31	1.14
49376563--49376646	27	3.4	26	75	15	81	65	1	2	30	1.13
49376974--49377062	24	3.6	25	76	15	87	64	26	1	7	1.28
49377005--49377053	23	2.2	23	88	3	73	57	30	2	10	1.43
49378574--49378631	27	2.1	27	100	0	116	51	6	3	37	1.46
49379444--49379492	25	2.0	25	100	0	98	51	20	20	8	1.73
49380214--49385538	733	7.2	734	83	4	6163	40	17	16	25	1.91
49383081--49383159	20	4.0	20	66	9	54	54	13	21	10	1.69
49383825--49383878	25	2.2	25	86	0	72	44	16	27	11	1.82
49395209--49395233	13	1.9	13	100	0	50	32	8	16	44	1.76
49396510--49396721	47	4.7	47	76	14	212	30	14	23	31	1.94
49396605--49396749	38	3.6	38	75	18	157	30	13	25	31	1.93
49396553--49396759	85	2.4	85	90	0	351	29	14	25	31	1.94
49396605--49396766	38	4.0	38	75	16	155	29	13	25	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49399176--49399356	61	2.9	62	80	4	213	25	25	21	26	2.00
49399196--49399356	61	2.6	62	85	6	220	27	24	21	26	1.99
49409613--49409662	16	3.2	16	80	2	57	22	2	22	54	1.55
49411369--49411547	46	3.8	46	77	11	184	22	20	27	29	1.98
49416401--49416576	27	6.6	27	80	8	180	28	15	28	27	1.96
49416402--49416550	81	1.9	80	85	7	212	28	16	28	27	1.97
49423706--49423730	13	1.9	13	100	0	50	32	20	16	32	1.94
49424275--49424452	27	6.6	27	80	6	180	28	15	27	28	1.96
49424277--49424427	82	1.9	81	85	4	214	27	16	27	27	1.97
49424273--49424452	82	2.2	81	79	4	202	28	15	27	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259