genome.fa.s9.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  135  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43873135--43873223	38	2.2	41	86	5	121	39	2	6	51	1.41
43877871--43877897	2	13.5	2	100	0	54	0	0	48	51	1.00
43883162--43883236	26	2.9	26	85	0	96	38	10	17	33	1.84
43892662--43892885	40	5.7	40	86	7	273	25	21	27	25	1.99
43892662--43892885	79	2.8	81	85	8	282	25	21	27	25	1.99
43892662--43892918	79	3.3	79	81	9	224	26	21	27	24	1.99
43899537--43899760	40	5.7	40	84	7	255	25	21	26	25	2.00
43899537--43899760	79	2.8	81	84	8	273	25	21	26	25	2.00
43899537--43899793	79	3.3	79	80	9	215	26	21	26	24	1.99
43907932--43907961	3	10.0	3	100	0	60	33	0	33	33	1.58
43919650--43919827	27	6.6	27	83	3	178	30	28	14	26	1.95
43919671--43919826	82	1.9	81	88	3	233	29	28	15	26	1.96
43927749--43927926	27	6.6	27	84	3	205	29	28	15	26	1.96
43927770--43927925	82	1.9	81	88	3	233	29	28	15	26	1.96
43938773--43938815	22	2.0	21	86	4	59	39	0	4	55	1.20
43939207--43939416	42	5.0	42	80	4	163	30	18	21	29	1.97
43942929--43943582	240	2.7	236	84	7	766	44	11	11	32	1.76
43944822--43944925	51	2.1	49	85	3	136	44	8	18	28	1.79
43944905--43944929	13	1.9	13	100	0	50	68	0	16	16	1.22
43945180--43945255	37	2.1	37	100	0	152	32	13	23	30	1.93
43954054--43954112	26	2.3	26	87	0	82	38	11	15	33	1.84
43965442--43965475	2	17.0	2	87	0	50	47	2	0	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43965839--43965949	27	4.0	27	72	16	82	57	3	0	38	1.16
43965879--43965912	12	2.9	12	91	4	52	67	5	0	26	1.13
43968527--43968609	41	2.0	41	92	0	139	18	18	7	56	1.63
43972818--43972877	30	2.0	30	93	0	102	28	25	6	40	1.80
43980257--43980316	30	2.0	30	90	0	93	28	23	6	41	1.79
43999158--43999335	27	6.6	27	81	5	171	29	28	15	26	1.96
43999179--43999334	82	1.9	81	85	3	215	28	28	16	26	1.97
44009028--44009158	49	2.7	50	83	2	158	25	30	17	26	1.97
44011462--44011694	49	4.7	50	81	6	267	24	16	27	30	1.96
44011567--44011650	28	3.2	28	65	25	83	23	16	29	29	1.96
44018237--44018262	12	2.2	12	100	0	52	38	30	0	30	1.58
44027753--44027876	26	4.8	26	88	1	160	31	25	17	25	1.97
44027926--44027982	20	3.0	20	87	10	75	33	19	8	38	1.82
44028325--44028364	21	2.0	21	90	5	64	25	40	17	17	1.91
44033443--44033594	27	5.6	27	80	7	89	34	21	9	34	1.85
44033483--44033574	27	3.4	27	92	0	148	27	22	8	41	1.83
44033566--44033709	27	5.3	26	70	12	85	38	22	11	28	1.88
44033607--44033719	27	4.2	26	80	4	118	42	21	7	29	1.79
44033537--44033719	81	2.3	81	76	7	192	38	21	9	30	1.86
44033627--44033757	54	2.4	54	82	2	138	39	18	9	32	1.82
44033810--44033870	27	2.3	27	83	10	74	29	19	22	27	1.98
44034664--44034758	25	3.8	25	92	0	145	26	26	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44034906--44034997	42	2.2	42	96	0	166	27	11	21	39	1.89
44035021--44035099	31	2.5	31	95	0	140	27	18	25	27	1.98
44038086--44038182	26	3.8	26	89	4	153	28	22	21	26	1.99
44038232--44038306	20	3.8	20	91	6	111	34	18	9	37	1.83
44038232--44038287	11	5.5	11	71	16	57	32	19	10	37	1.86
44038249--44038305	9	5.8	10	76	15	57	35	19	8	36	1.83
44044120--44044153	13	2.5	14	90	4	52	26	0	5	67	1.13
44044289--44044583	50	5.9	50	75	3	252	27	16	24	31	1.97
44044298--44044616	150	2.1	151	83	5	385	27	16	24	31	1.96
44048155--44048332	39	4.6	39	94	0	293	24	21	24	28	1.99
44053044--44053117	29	2.6	29	86	4	96	25	31	16	27	1.96
44058929--44059067	39	3.6	39	97	0	251	23	21	26	28	1.99
44073451--44073588	27	5.1	27	80	11	158	34	20	24	20	1.96
44073458--44073592	54	2.5	54	91	1	218	34	20	25	19	1.96
44076430--44076553	26	4.8	26	92	1	205	29	23	19	27	1.98
44076603--44076659	20	3.0	20	87	10	75	33	21	8	36	1.84
44088130--44088190	30	2.0	30	93	0	104	29	24	6	39	1.80
44093865--44094009	40	3.6	40	84	4	175	24	24	25	24	2.00
44101881--44102025	40	3.6	40	85	4	184	26	24	25	23	2.00
44105073--44105105	17	1.9	18	88	11	52	45	6	15	33	1.70
44105652--44105767	57	2.0	57	86	0	160	37	22	17	23	1.94
44107245--44107578	35	9.4	34	68	11	143	34	22	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44107305--44107578	108	2.6	107	86	1	370	34	22	19	23	1.97
44117588--44117665	38	2.1	38	100	0	156	38	7	15	38	1.76
44118698--44118756	31	1.9	31	86	6	84	37	15	16	30	1.90
44125552--44125861	94	3.3	93	77	5	288	27	19	28	24	1.99
44130932--44131146	27	8.0	27	91	0	304	35	18	21	24	1.96
44131353--44131445	25	3.7	25	91	0	150	24	25	22	26	2.00
44131353--44131481	25	5.1	24	82	8	116	28	22	22	26	1.99
44134574--44134676	23	4.5	23	73	10	86	40	17	18	23	1.91
44134659--44134712	26	2.2	26	86	6	76	40	18	16	24	1.90
44145911--44146227	47	6.8	45	77	11	252	22	29	20	27	1.98
44145912--44146227	94	3.4	93	76	12	283	22	30	20	26	1.98
44145912--44146227	141	2.2	138	81	7	334	22	30	20	26	1.98
44146567--44146624	30	1.9	30	89	0	89	27	24	13	34	1.93
44151692--44151724	17	1.9	17	88	11	50	51	0	3	45	1.16
44153535--44153644	40	2.8	40	84	2	132	25	28	12	33	1.92
44154747--44154772	11	2.4	11	100	0	52	38	0	0	61	0.96
44155236--44155360	62	2.0	62	100	0	250	28	6	19	45	1.74
44158339--44158438	28	3.6	27	82	4	92	34	22	23	21	1.97
44169258--44169360	38	2.7	38	84	0	116	24	24	22	29	1.99
44169358--44169469	43	2.6	43	94	0	197	10	25	33	31	1.90
44171494--44171751	45	5.9	45	78	8	264	31	27	17	24	1.97
44175891--44176177	137	2.1	137	96	0	529	31	25	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44177163--44177246	44	1.9	44	100	0	168	33	16	10	39	1.83
44178010--44178093	26	3.2	26	94	0	141	36	26	4	32	1.77
44182150--44182230	39	2.1	39	90	4	128	46	14	9	28	1.77
44187220--44187279	17	3.6	16	74	17	50	26	30	8	35	1.86
44187675--44187771	30	3.2	30	76	2	106	27	16	27	27	1.97
44187984--44188053	22	3.2	22	78	8	79	40	14	21	24	1.90
44188938--44188989	21	2.5	21	87	0	86	30	25	26	17	1.97
44188928--44189026	21	4.6	21	80	8	83	38	22	21	18	1.93
44188924--44189026	23	4.7	22	78	9	95	38	22	20	18	1.93
44190440--44190617	27	6.6	27	81	5	171	29	28	14	27	1.95
44190466--44190616	82	1.9	81	87	4	223	28	28	15	27	1.96
44198681--44198857	27	6.5	27	81	5	169	29	28	14	27	1.95
44198706--44198856	82	1.9	81	87	4	223	28	28	15	27	1.96
44205526--44205561	3	12.0	3	100	0	72	66	0	33	0	0.92
44208336--44208526	47	4.1	47	89	2	260	35	10	28	26	1.89
44208383--44208461	25	3.3	25	67	22	78	34	10	26	29	1.89
44208365--44208436	22	3.1	22	64	24	58	33	13	29	23	1.93
44208500--44208595	46	2.1	46	84	3	122	33	9	33	23	1.87
44220658--44220794	48	2.9	48	97	0	256	33	6	29	29	1.83
44220935--44221037	37	2.8	37	96	0	188	23	20	32	24	1.98
44231746--44231775	16	1.9	15	93	6	51	6	20	20	53	1.67
44239093--44239183	45	2.0	45	91	0	146	25	13	24	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44246786--44246859	28	2.6	28	89	4	105	32	25	13	28	1.94
44251642--44251721	39	2.1	39	100	0	160	35	17	2	45	1.62
44261383--44261418	16	2.2	17	95	5	65	72	0	5	22	1.05
44261475--44261504	14	2.1	14	100	0	60	30	36	6	26	1.82
44261555--44261591	19	1.9	18	89	10	56	35	0	0	64	0.94
44261991--44262039	22	2.2	23	92	3	82	32	0	10	57	1.32
44262400--44262459	30	2.0	30	96	0	111	31	8	23	36	1.84
44278007--44278371	194	1.9	194	95	0	658	33	10	17	38	1.84
44282071--44282254	40	4.7	40	82	8	200	25	21	27	26	1.99
44282073--44282219	79	1.9	79	83	11	194	25	21	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259