genome.fa.s9.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  189  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60664095--60664124	5	6.0	5	100	0	60	80	0	0	20	0.72
60666928--60666968	11	3.7	11	80	0	55	21	14	7	56	1.63
60667192--60667225	12	2.8	12	90	0	50	67	0	0	32	0.91
60667998--60668032	18	1.9	18	100	0	70	62	0	28	8	1.24
60672068--60672095	3	9.3	3	100	0	56	35	0	0	64	0.94
60673143--60673206	29	2.1	31	82	11	78	46	0	4	48	1.23
60677608--60677636	6	4.8	6	100	0	58	48	0	0	51	1.00
60677608--60677643	18	2.0	18	88	0	54	50	0	2	47	1.15
60679364--60679399	17	2.1	17	90	10	56	66	0	33	0	0.92
60679366--60679402	6	6.3	6	84	15	51	67	0	32	0	0.91
60680155--60680222	30	2.3	30	92	0	118	26	50	5	17	1.69
60680700--60680834	23	5.7	23	69	12	78	34	4	3	57	1.36
60680767--60680913	25	5.9	25	73	13	88	30	6	4	57	1.45
60680975--60681030	25	2.3	24	79	14	62	37	16	3	42	1.65
60693830--60694001	93	1.8	93	88	2	265	27	29	20	22	1.99
60693822--60693991	46	3.7	45	79	7	189	29	28	20	21	1.98
60693873--60694016	46	3.1	46	72	14	125	29	27	20	22	1.98
60696389--60696459	15	4.7	15	81	6	90	57	12	18	11	1.64
60709262--60709470	111	1.9	111	81	5	253	24	24	26	24	2.00
60713971--60714012	22	2.0	21	90	4	66	50	0	0	50	1.00
60717854--60717923	27	2.6	27	95	2	113	31	28	12	27	1.93
60717854--60717951	28	3.5	28	88	2	126	31	27	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60721010--60721042	17	1.9	17	93	0	57	30	3	3	63	1.24
60721378--60721412	18	1.9	18	88	0	52	34	0	5	60	1.21
60733784--60733959	71	2.5	70	84	3	212	28	14	23	34	1.93
60734053--60734192	54	2.6	54	89	2	219	27	16	20	35	1.94
60734151--60734367	88	2.5	87	88	5	305	24	17	22	36	1.94
60734316--60734523	56	3.9	54	81	8	221	29	14	17	37	1.90
60734558--60734652	44	2.2	44	100	0	190	26	13	26	33	1.94
60736213--60736245	17	1.9	17	93	0	57	30	3	3	63	1.24
60736581--60736615	18	1.9	18	88	0	52	34	0	5	60	1.21
60739285--60739452	9	17.6	9	66	17	54	66	1	1	30	1.10
60739313--60739388	28	2.8	27	81	16	86	61	1	0	36	1.04
60739353--60739482	33	4.0	32	73	23	103	63	3	0	33	1.10
60739378--60739448	20	3.4	21	75	5	56	67	2	0	29	1.05
60739406--60739460	28	2.0	26	89	6	83	70	1	0	27	0.97
60739371--60739452	30	2.7	30	75	9	76	68	2	0	29	1.03
60739490--60739519	15	2.0	15	100	0	60	60	6	0	33	1.23
60740000--60740054	21	2.6	22	80	13	62	36	0	5	58	1.21
60739985--60740060	29	2.5	30	83	8	84	32	0	6	60	1.22
60744947--60744993	13	3.5	13	81	13	51	21	4	0	74	0.99
60744959--60744991	15	2.1	15	94	5	57	24	0	0	75	0.80
60746832--60746977	71	2.1	70	81	10	163	32	6	5	55	1.49
60746859--60746980	23	5.4	22	69	20	74	31	7	4	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60747012--60747063	3	17.0	3	78	4	50	34	3	3	57	1.35
60747012--60747051	16	2.6	15	88	4	53	32	5	5	57	1.42
60747184--60747243	23	2.5	26	82	17	76	35	10	0	55	1.34
60747202--60747239	17	2.2	18	85	4	51	34	10	0	55	1.34
60749831--60749877	24	2.0	24	100	0	94	14	34	46	4	1.64
60755949--60755993	23	2.0	23	82	8	56	37	8	13	40	1.76
60757560--60757653	49	1.9	49	84	0	125	31	28	18	21	1.96
60757426--60757654	127	1.8	127	92	0	386	30	27	18	23	1.97
60758300--60758359	30	2.0	30	83	6	77	28	23	8	40	1.83
60761205--60761274	33	2.2	33	97	2	133	47	5	5	41	1.51
60771232--60771339	26	4.2	26	93	0	189	32	7	24	36	1.83
60776640--60776679	21	2.0	21	85	9	57	27	12	27	32	1.93
60778323--60778430	26	4.2	26	85	0	144	32	7	24	36	1.83
60778323--60778430	52	2.1	52	89	0	162	32	7	24	36	1.83
60779978--60780018	22	1.9	21	85	5	55	19	17	19	43	1.88
60786076--60786108	15	2.2	15	94	0	57	0	30	27	42	1.56
60788169--60788479	154	2.0	154	95	0	559	35	13	20	31	1.91
60790123--60790164	21	2.0	21	90	4	68	16	7	21	54	1.65
60791289--60791353	33	1.9	34	81	9	80	63	1	9	26	1.34
60791436--60791473	20	1.9	20	84	10	51	55	2	15	26	1.54
60791532--60791728	3	65.0	3	71	15	68	60	4	6	28	1.41
60791540--60791643	20	5.0	20	68	12	66	65	1	6	25	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60792930--60792971	15	2.8	15	88	0	66	42	23	33	0	1.55
60797257--60798130	120	7.3	120	96	0	1475	44	2	4	48	1.37
60797594--60797628	18	2.0	17	88	5	52	45	0	0	54	0.99
60797834--60797868	18	2.0	17	88	5	52	45	0	0	54	0.99
60797954--60797988	18	2.0	17	88	5	52	45	0	0	54	0.99
60798074--60798108	18	2.0	17	88	5	52	45	0	0	54	0.99
60798273--60798363	45	2.0	45	85	6	123	38	28	5	27	1.79
60798344--60798411	16	4.2	16	96	0	127	36	36	1	25	1.65
60799220--60799263	21	2.0	22	86	4	63	63	4	27	4	1.33
60803241--60803348	26	4.2	26	92	0	180	37	24	6	32	1.81
60806302--60806370	23	3.1	22	72	16	61	26	10	5	57	1.53
60806281--60806449	39	4.2	39	80	10	189	26	11	5	56	1.55
60806294--60806449	83	1.9	79	83	8	199	26	10	5	57	1.53
60806742--60806769	5	5.6	5	100	0	56	21	0	0	78	0.75
60815140--60815279	69	2.0	69	95	0	253	46	9	5	38	1.60
60819805--60819858	26	2.1	25	93	6	90	42	1	3	51	1.30
60821063--60821125	30	2.1	30	84	0	81	25	9	6	58	1.53
60837174--60837212	14	2.6	16	80	19	57	56	0	0	43	0.99
60837866--60837890	12	2.1	12	100	0	50	68	8	0	24	1.16
60854044--60854082	19	2.1	19	85	9	53	43	5	23	28	1.75
60855233--60855263	3	10.7	3	93	6	55	67	0	0	32	0.91
60858687--60858732	20	2.2	21	92	7	85	47	19	0	32	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60858687--60858739	11	5.1	11	86	11	76	49	16	0	33	1.47
60858691--60858739	5	9.2	6	81	18	56	48	16	0	34	1.46
60858733--60858763	14	2.1	15	94	5	55	61	0	6	32	1.21
60858725--60858775	18	3.1	17	78	21	63	62	1	5	29	1.29
60869092--60869120	13	2.2	13	100	0	58	31	0	13	55	1.39
60876185--60876230	24	1.9	24	86	8	67	71	4	0	23	1.03
60881707--60881747	5	8.2	5	100	0	82	80	0	19	0	0.71
60881833--60881894	30	2.1	30	100	0	124	30	24	16	29	1.96
60884977--60885024	17	2.9	17	75	3	53	31	37	8	22	1.84
60886333--60886383	23	2.3	23	86	10	70	37	0	3	58	1.16
60886642--60886697	12	4.3	12	75	20	51	32	7	1	58	1.35
60891314--60891406	18	5.2	18	88	0	132	26	19	17	36	1.94
60891314--60891406	36	2.6	36	89	0	150	26	19	17	36	1.94
60896344--60896383	20	2.1	20	86	9	57	52	0	15	32	1.43
60899564--60899613	25	2.0	25	84	7	66	46	0	0	54	1.00
60899556--60899630	29	2.6	30	82	4	91	52	0	1	46	1.09
60904127--60904220	47	2.0	47	95	0	170	37	7	24	30	1.83
60908280--60908353	17	4.4	17	71	5	53	66	0	1	32	1.00
60909641--60909994	73	4.8	74	84	4	430	31	18	17	31	1.95
60910464--60910953	74	6.5	74	83	8	553	31	20	16	31	1.95
60910268--60910886	233	2.7	230	82	5	703	33	20	17	28	1.95
60910664--60910954	75	4.0	73	88	4	397	31	20	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60918232--60918272	11	3.7	11	80	0	55	19	14	9	56	1.66
60918309--60918372	31	2.1	31	91	2	103	25	3	14	57	1.51
60918951--60919019	31	2.3	30	85	12	88	46	20	10	23	1.80
60921185--60921249	23	2.9	21	77	9	58	41	0	1	56	1.08
60921310--60921341	15	2.1	15	94	0	55	46	3	0	50	1.17
60928110--60928348	27	8.9	27	71	19	137	59	2	5	31	1.36
60928091--60928348	26	9.7	25	69	18	123	59	3	5	31	1.36
60928146--60928195	16	3.4	16	71	25	56	68	0	4	28	1.08
60928152--60928214	23	2.5	24	80	14	74	66	0	3	30	1.07
60928293--60928348	24	2.3	23	85	8	76	58	0	7	33	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259