genome.fa.s9.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  193  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61912799--61913037	40	6.0	40	94	0	406	26	31	22	20	1.98
61914312--61914414	37	2.8	37	93	0	179	24	32	19	24	1.98
61914555--61914693	48	2.9	48	97	0	260	30	29	6	33	1.83
61920372--61920455	37	2.3	37	100	0	168	29	25	21	23	1.99
61925062--61925123	19	3.2	19	90	4	97	35	9	19	35	1.85
61930302--61930349	20	2.4	20	86	6	62	81	0	12	6	0.87
61931351--61932007	44	14.9	44	69	15	306	30	15	26	28	1.96
61931350--61931952	88	6.9	87	71	16	372	29	14	26	29	1.95
61931346--61931982	176	3.6	176	89	1	920	29	14	26	29	1.95
61932175--61932368	45	4.3	45	83	1	210	31	14	28	25	1.95
61931351--61932374	44	23.1	45	67	15	249	30	15	26	28	1.96
61932716--61932784	19	3.7	19	90	7	115	36	11	14	37	1.83
61932706--61932783	36	2.2	35	82	15	97	35	11	14	38	1.82
61942870--61942920	3	17.0	3	100	0	102	66	0	0	33	0.92
61945433--61945548	50	2.3	52	88	5	166	34	16	12	36	1.87
61951210--61951265	13	4.2	13	74	17	53	46	10	1	41	1.49
61953008--61953060	20	2.7	20	79	2	63	28	1	3	66	1.20
61954634--61954787	42	3.7	41	85	4	193	33	15	21	29	1.94
61962163--61962315	42	3.6	42	85	4	202	33	15	20	30	1.94
61965227--61965296	27	2.6	27	86	2	97	22	20	21	35	1.96
61967261--61967290	13	2.3	13	94	0	51	60	0	0	40	0.97
61967281--61967330	23	2.1	25	85	7	68	78	4	8	10	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61968163--61968327	44	3.6	44	68	13	127	20	18	23	38	1.94
61968184--61968377	93	2.1	93	90	0	298	20	17	21	40	1.92
61971861--61971901	11	3.7	11	80	0	55	19	14	9	56	1.66
61971930--61971959	11	2.7	11	100	0	60	26	0	0	73	0.84
61971943--61971999	30	1.9	30	88	0	87	28	3	14	54	1.56
61972123--61972156	11	3.0	12	87	12	54	67	0	0	32	0.91
61975272--61975533	140	1.9	140	81	3	321	29	17	28	24	1.97
61978469--61978512	21	2.1	21	87	8	63	65	0	0	34	0.93
61980594--61980647	21	2.6	21	76	5	56	29	27	25	16	1.97
61982023--61982172	3	49.7	3	72	13	87	34	6	1	58	1.31
61982023--61982172	14	10.5	15	68	18	63	34	6	1	58	1.31
61982128--61982172	23	2.0	23	86	0	63	33	6	2	57	1.37
61982258--61982290	17	1.9	17	88	11	50	18	3	0	78	0.87
61984317--61984368	15	3.3	15	82	12	52	48	13	13	25	1.79
61985370--61985479	26	4.2	26	97	0	184	33	5	24	36	1.79
61991172--61991281	26	4.2	26	97	0	184	33	5	24	36	1.79
61996826--61996871	19	2.5	19	80	13	53	58	4	0	36	1.18
62000929--62001104	46	3.8	46	76	11	189	19	21	30	28	1.98
62000925--62001097	93	1.9	93	92	2	294	20	21	30	27	1.98
62005385--62005455	35	2.1	34	91	2	115	36	9	22	30	1.87
62014799--62014860	10	6.1	10	88	1	61	67	0	8	24	1.17
62014801--62014860	20	3.0	20	85	0	84	68	0	8	23	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62014857--62014909	26	2.0	27	82	10	65	54	11	0	33	1.36
62015518--62015698	95	1.9	97	88	2	276	30	25	15	27	1.96
62016478--62016534	15	3.7	15	80	17	64	77	0	1	21	0.86
62016483--62016537	11	4.8	11	80	14	67	76	0	1	21	0.88
62016483--62016534	21	2.2	25	87	12	76	76	0	1	21	0.87
62018686--62018763	38	2.1	38	100	0	156	21	25	15	37	1.93
62020262--62020321	10	6.0	10	84	11	79	68	1	8	21	1.25
62028630--62028663	17	2.0	17	100	0	68	52	17	11	17	1.73
62033812--62033840	14	2.1	14	100	0	58	27	13	6	51	1.66
62036654--62036732	24	3.3	23	77	12	79	34	21	25	18	1.96
62039305--62039380	34	2.2	34	83	4	100	32	21	22	23	1.98
62039803--62039837	18	1.9	18	88	11	54	20	42	25	11	1.85
62054786--62054818	16	2.1	16	94	0	57	84	0	0	15	0.61
62054776--62054825	22	2.3	22	83	13	59	80	2	2	16	0.91
62064941--62064980	18	2.2	18	100	0	80	25	17	5	52	1.64
62089609--62089691	41	2.0	41	90	0	130	33	16	27	21	1.95
62090417--62090461	23	1.9	23	82	13	56	31	0	28	40	1.57
62091986--62092301	49	6.7	45	78	11	262	21	28	20	28	1.98
62092035--62092300	95	2.8	94	80	8	301	21	28	20	28	1.98
62101237--62101461	44	5.1	44	83	2	247	33	20	18	27	1.96
62101237--62101461	88	2.6	88	86	1	308	33	20	18	27	1.96
62103091--62103121	4	8.0	4	92	7	55	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62104415--62104465	20	2.5	20	83	0	75	17	33	31	17	1.94
62105064--62105219	48	3.1	48	77	16	188	41	23	1	33	1.65
62106428--62106475	19	2.6	18	83	9	53	2	27	2	68	1.11
62106671--62106708	3	12.3	3	94	5	67	65	0	0	34	0.93
62106704--62106731	4	7.0	4	100	0	56	75	0	0	25	0.81
62107862--62107904	19	2.3	19	83	0	59	11	9	2	76	1.10
62107926--62107968	13	3.2	13	86	3	50	18	0	4	76	0.95
62107922--62107955	9	3.8	9	85	14	52	17	0	2	79	0.86
62107972--62108038	22	3.0	23	79	14	68	41	0	4	53	1.21
62107988--62108141	36	4.5	32	85	11	139	41	0	1	55	1.15
62108022--62108128	13	8.8	12	69	21	64	40	0	1	57	1.16
62107993--62108048	23	2.4	25	82	17	75	41	0	0	58	0.98
62108043--62108177	22	5.8	23	63	24	61	42	0	1	54	1.14
62108035--62108078	22	2.1	20	87	8	61	38	0	2	59	1.10
62108010--62108148	36	4.0	35	90	3	203	41	0	1	56	1.13
62108010--62108148	71	2.0	68	87	6	199	41	0	1	56	1.13
62108105--62108183	21	3.5	21	72	16	61	45	0	1	53	1.08
62108116--62108166	20	2.4	21	90	6	77	43	0	0	56	0.99
62108158--62108216	14	4.4	13	78	6	55	50	0	0	49	1.00
62108181--62108217	13	2.7	14	84	15	51	54	0	0	45	1.00
62108252--62108335	18	4.8	16	71	26	55	78	2	4	14	1.01
62108303--62108353	26	1.9	26	84	4	66	80	1	5	11	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62114933--62114962	14	2.1	14	100	0	60	0	40	6	53	1.27
62121090--62121155	28	2.4	27	80	5	71	56	3	6	34	1.40
62122857--62123033	90	2.0	89	80	5	196	25	23	19	30	1.98
62122863--62123144	132	2.1	135	80	3	311	25	26	18	29	1.98
62138960--62139091	39	3.5	36	78	11	140	49	3	15	31	1.60
62138960--62139102	38	3.8	38	82	7	157	48	4	16	30	1.64
62139610--62139658	24	2.0	26	84	8	66	40	2	4	53	1.32
62140741--62140779	19	2.0	21	90	10	64	30	17	5	46	1.70
62147103--62147146	21	2.1	22	87	8	65	50	13	6	29	1.68
62150384--62150449	28	2.4	27	80	5	71	56	3	6	34	1.40
62166572--62166641	34	2.1	34	94	0	122	27	30	15	27	1.96
62170221--62170281	14	4.6	13	75	15	54	39	1	13	45	1.53
62170659--62170701	21	2.0	22	86	4	61	58	11	2	27	1.46
62172784--62172823	14	2.7	15	84	7	55	65	2	10	22	1.35
62174272--62174315	12	3.6	12	82	14	54	13	0	6	79	0.92
62174272--62174309	19	2.0	20	89	5	60	13	0	7	78	0.94
62175940--62175979	21	2.0	20	85	14	55	0	57	0	42	0.98
62176437--62176479	19	2.3	19	100	0	86	34	0	4	60	1.17
62176857--62176928	20	3.5	20	74	12	58	33	5	4	56	1.41
62177539--62177594	21	2.6	22	81	13	71	28	8	0	62	1.25
62177550--62177590	22	1.9	21	90	5	64	26	12	0	60	1.31
62177509--62177604	37	2.5	37	79	12	97	31	7	1	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62189574--62189728	84	1.8	84	89	5	242	29	17	18	34	1.94
62189926--62190140	86	2.5	85	88	7	310	28	16	18	36	1.93
62189665--62190178	273	1.9	260	82	10	628	27	15	19	37	1.92
62202617--62202656	14	2.7	15	84	7	55	65	2	10	22	1.35
62204086--62204127	17	2.4	18	84	15	61	11	0	9	78	0.96
62205717--62205753	19	1.9	19	89	10	58	0	54	0	45	1.00
62206202--62206243	19	2.3	19	95	4	77	35	0	4	59	1.19
62206614--62206678	20	3.2	20	76	12	53	33	4	3	58	1.34
62206650--62206697	20	2.4	20	83	13	55	35	6	2	56	1.36
62207280--62207361	8	9.8	8	71	20	53	32	4	1	60	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259