genome.fa.s9.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  216  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68414955--68415038	41	2.1	41	93	4	145	35	0	8	55	1.30
68416344--68416479	56	2.4	56	92	0	227	27	16	25	31	1.96
68416344--68416508	56	2.9	56	87	5	183	26	16	26	30	1.96
68417843--68417883	18	2.3	18	91	4	66	43	0	14	41	1.45
68420046--68420087	21	2.0	21	90	0	66	35	26	16	21	1.94
68420809--68420851	18	2.3	19	88	4	61	72	2	4	20	1.14
68421172--68421226	18	3.0	18	82	10	58	43	1	0	54	1.10
68421170--68421226	19	3.0	20	82	10	66	43	1	0	54	1.10
68422231--68422270	18	2.2	19	95	4	73	20	20	12	47	1.81
68428844--68428875	16	2.0	16	100	0	64	18	18	18	43	1.88
68431303--68431359	26	2.2	26	90	0	87	26	10	19	43	1.83
68432484--68432751	129	2.0	134	96	3	501	41	12	17	28	1.87
68438065--68438180	61	1.9	61	82	8	146	50	6	17	25	1.71
68438140--68438226	44	2.0	44	84	8	115	41	9	18	31	1.82
68444613--68444729	58	2.0	56	83	8	146	41	2	5	50	1.40
68444779--68444808	16	1.9	16	93	6	53	20	26	0	53	1.46
68445803--68445846	23	1.9	23	86	9	63	22	6	45	25	1.77
68468175--68468237	31	2.0	31	100	0	126	58	3	15	22	1.51
68471655--68471731	39	2.0	39	97	0	145	41	9	15	33	1.79
68475679--68475747	25	2.7	26	80	8	79	30	7	1	60	1.32
68476347--68476405	9	6.9	9	73	9	52	28	10	1	59	1.40
68494983--68495482	44	11.5	43	67	12	270	35	22	23	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68494942--68495574	86	7.3	85	83	4	691	34	22	23	19	1.97
68494942--68495568	174	3.6	173	86	2	807	34	22	23	19	1.97
68494942--68495571	260	2.4	261	85	4	801	34	22	23	20	1.97
68496948--68497016	25	2.7	26	80	8	79	30	7	1	60	1.32
68497447--68497473	3	9.0	3	100	0	54	33	0	0	66	0.92
68497618--68497676	9	6.9	9	73	9	52	28	10	1	59	1.40
68497759--68497872	47	2.4	47	81	10	135	29	14	2	52	1.56
68513744--68513773	13	2.4	13	94	5	53	56	3	6	33	1.42
68520765--68520834	29	2.4	29	80	0	77	41	17	18	22	1.90
68523910--68523972	26	2.4	26	84	5	83	41	14	3	41	1.61
68523965--68524009	23	1.9	24	86	13	67	40	11	6	42	1.67
68540249--68540297	20	2.5	20	82	0	62	24	22	10	42	1.84
68544707--68544751	9	4.8	9	78	10	54	68	2	0	28	1.01
68547584--68547625	17	2.5	17	77	11	50	64	0	2	33	1.07
68548426--68548533	26	4.2	26	93	0	189	32	7	24	36	1.83
68555513--68555620	26	4.2	26	93	0	189	32	7	24	36	1.83
68559313--68559342	13	2.2	14	94	5	53	46	0	0	53	1.00
68560031--68560063	14	2.4	14	94	0	57	90	9	0	0	0.44
68577100--68577149	25	2.0	25	100	0	100	52	12	24	12	1.72
68581080--68581216	51	2.7	51	79	0	175	39	6	13	40	1.71
68581825--68581872	19	2.5	19	93	0	78	35	12	10	41	1.77
68582390--68582491	27	3.8	26	88	6	132	36	20	24	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68588138--68588176	20	2.0	20	100	0	78	61	2	5	30	1.31
68588203--68588234	12	2.6	13	85	14	50	25	0	0	75	0.81
68589124--68589165	22	1.9	22	90	0	66	57	4	0	38	1.20
68592951--68592975	7	3.6	7	100	0	50	56	0	0	44	0.99
68594720--68594784	29	2.2	29	81	5	69	69	3	21	6	1.25
68594988--68595056	21	3.2	21	65	25	54	49	10	18	21	1.77
68594980--68595066	43	2.0	43	88	4	131	42	11	21	24	1.86
68595174--68595212	20	2.0	20	85	10	53	33	25	7	33	1.84
68600560--68600614	26	2.1	26	96	0	101	21	25	27	25	2.00
68600586--68600672	39	2.2	39	87	0	120	22	20	28	27	1.99
68600586--68600699	39	2.9	39	81	2	113	21	22	29	25	1.99
68602841--68602991	53	2.8	53	89	4	214	25	16	27	29	1.97
68604341--68604384	23	1.9	23	85	0	61	56	4	9	29	1.50
68604492--68604548	19	2.9	20	84	10	73	56	7	0	36	1.27
68604500--68604548	17	2.8	17	84	6	53	57	6	0	36	1.24
68604499--68604572	19	4.2	19	78	16	72	60	4	0	35	1.15
68604549--68604767	3	73.7	3	68	17	88	61	4	3	30	1.32
68604526--68604716	69	2.8	67	75	15	187	61	5	1	31	1.27
68610672--68610713	20	2.1	20	86	0	57	50	2	2	45	1.27
68612953--68612981	5	6.0	5	96	4	51	37	0	0	62	0.96
68613777--68613828	9	5.4	9	78	13	59	61	5	0	32	1.20
68613778--68613828	19	2.6	19	90	3	75	62	5	0	31	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68614492--68614543	21	2.4	21	83	3	59	42	1	7	48	1.43
68615071--68615111	20	2.0	20	85	4	55	46	0	2	51	1.14
68615080--68615119	19	2.2	18	86	8	55	47	0	0	52	1.00
68625271--68625304	3	11.3	3	100	0	68	35	0	0	64	0.94
68632042--68632084	22	2.0	22	86	8	63	27	9	2	60	1.40
68632332--68632439	45	2.5	44	82	8	132	27	6	7	58	1.50
68634497--68634556	29	2.1	28	90	3	93	33	13	43	10	1.77
68643806--68643856	15	3.5	15	69	15	52	31	0	7	60	1.25
68645050--68645092	17	2.6	16	82	10	50	81	2	13	2	0.89
68645897--68645950	29	1.9	27	85	7	72	42	18	16	22	1.89
68663426--68663470	24	1.9	23	86	4	63	51	11	8	28	1.68
68668797--68668846	11	4.7	11	82	9	68	30	32	0	38	1.58
68668789--68668846	20	2.7	21	84	10	73	31	29	0	39	1.57
68669993--68670019	7	3.9	7	100	0	54	25	0	14	59	1.36
68670637--68670679	18	2.4	18	92	0	68	16	27	11	44	1.82
68671076--68671261	61	3.1	61	71	20	203	39	3	9	48	1.51
68671062--68671328	116	2.3	116	96	1	491	40	4	8	47	1.52
68671111--68671292	54	3.2	53	71	19	170	42	2	7	46	1.46
68674343--68674881	126	4.3	126	90	0	819	27	20	17	34	1.95
68674964--68674993	15	2.0	15	93	0	51	46	36	0	16	1.47
68674968--68675173	96	2.1	97	81	9	251	41	16	1	39	1.58
68675163--68675204	16	2.6	17	85	11	61	54	26	0	19	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68676540--68676564	5	5.0	5	100	0	50	20	80	0	0	0.72
68682114--68682162	25	1.9	26	91	4	82	26	6	26	40	1.79
68684225--68684266	18	2.3	18	88	8	59	45	0	0	54	0.99
68690697--68690769	18	3.8	18	75	16	67	63	0	6	30	1.21
68690708--68690773	31	2.1	31	83	10	82	66	0	6	27	1.15
68690711--68690760	21	2.4	21	75	0	55	64	0	6	30	1.18
68692118--68692186	11	6.4	11	72	3	50	69	13	2	14	1.30
68699294--68699352	4	14.8	4	96	0	91	20	49	5	25	1.69
68701538--68701912	194	1.9	192	85	3	520	33	11	14	41	1.81
68702310--68702357	11	4.4	11	78	0	51	62	6	12	18	1.50
68707614--68707651	19	2.0	20	89	5	60	55	2	5	36	1.37
68707614--68707652	20	2.0	20	89	0	60	56	2	5	35	1.35
68707614--68707659	20	2.2	21	84	7	58	58	2	6	32	1.36
68707725--68707769	18	2.3	20	88	7	67	60	4	2	33	1.29
68711874--68711927	18	2.9	19	77	20	60	33	3	7	55	1.45
68714659--68714703	23	2.0	23	82	8	56	57	6	31	4	1.44
68715343--68715390	15	3.3	15	76	2	53	56	8	0	35	1.30
68716227--68716266	18	2.2	19	86	4	55	30	0	25	45	1.54
68721272--68721325	26	2.1	26	100	0	108	48	3	24	24	1.67
68727143--68727176	17	1.9	18	88	5	52	20	20	5	52	1.67
68731030--68731066	19	1.9	19	88	0	56	43	2	16	37	1.62
68731634--68731689	12	4.5	12	84	4	58	41	3	0	55	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68731729--68731757	14	2.0	15	93	6	51	68	6	20	3	1.27
68735891--68735930	13	2.9	14	85	7	55	62	0	10	27	1.27
68736696--68736734	13	2.8	14	84	7	53	51	0	0	48	1.00
68736741--68736797	26	2.1	28	84	12	75	73	3	15	7	1.18
68738872--68738960	23	4.0	22	84	7	119	20	19	23	37	1.94
68741274--68741322	10	4.9	10	84	0	71	67	0	8	24	1.18
68743731--68743758	14	2.0	14	100	0	56	35	14	21	28	1.92
68743932--68743979	23	2.1	23	100	0	96	37	25	4	33	1.75
68745852--68745897	17	2.6	19	76	16	53	30	2	0	67	1.03
68746417--68746567	81	1.9	80	83	5	198	38	3	11	46	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259