genome.fa.s9.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  111  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35817201--35817314	43	2.7	42	75	12	117	29	14	27	28	1.96
35822811--35822988	27	6.6	27	82	3	196	26	15	28	29	1.96
35822812--35822967	82	1.9	81	86	3	224	26	16	28	28	1.97
35822808--35822988	82	2.2	81	82	2	220	27	16	27	29	1.97
35830927--35831104	27	6.6	27	81	3	187	27	15	28	29	1.96
35830927--35831075	55	2.7	55	81	4	176	27	16	27	28	1.97
35830924--35831104	82	2.2	81	81	2	211	27	15	27	29	1.96
35833737--35833889	39	3.9	39	92	0	243	22	21	29	26	1.99
35833741--35833917	78	2.3	78	89	2	239	23	22	29	25	1.99
35836705--35836884	90	2.0	91	98	1	353	41	16	17	24	1.90
35841125--35841310	80	2.3	80	83	9	220	28	27	20	23	1.99
35841127--35841310	40	4.6	40	82	7	196	28	27	20	23	1.99
35844206--35844381	56	3.1	56	99	0	343	44	9	23	22	1.81
35845566--35845810	120	2.1	118	84	4	314	25	20	27	26	1.99
35845513--35845777	40	6.7	40	86	4	331	24	21	27	26	1.99
35853546--35853771	40	5.7	40	91	3	348	24	19	27	27	1.99
35853546--35853804	120	2.2	120	84	4	337	25	19	27	27	1.99
35859728--35859755	5	5.6	5	100	0	56	21	0	0	78	0.75
35861455--35861486	14	2.3	14	100	0	64	31	46	15	6	1.71
35866580--35866611	14	2.3	14	100	0	64	31	46	15	6	1.71
35872072--35872103	15	2.1	15	100	0	64	43	18	15	21	1.87
35875564--35875607	22	2.0	23	95	4	81	29	4	15	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35875991--35876041	24	2.1	24	82	7	59	25	0	17	56	1.41
35876405--35876511	49	2.3	46	85	4	133	32	13	13	41	1.82
35881421--35881611	57	3.4	57	83	2	240	32	14	25	26	1.95
35881460--35881613	29	5.4	29	67	14	104	31	16	24	28	1.96
35881487--35881581	28	3.4	28	70	13	86	30	16	23	29	1.96
35889175--35889228	27	2.0	28	81	3	65	61	3	5	29	1.36
35892696--35892995	146	2.0	151	90	5	484	43	15	15	26	1.85
35893884--35893937	25	2.0	27	86	10	76	22	9	0	68	1.17
35894029--35894073	15	2.9	16	93	3	74	26	0	2	71	0.98
35894029--35894073	8	5.8	8	92	5	74	26	0	2	71	0.98
35894023--35894095	8	8.9	8	79	11	67	32	0	2	64	1.08
35894247--35894314	28	2.4	28	80	7	75	20	2	27	48	1.64
35894374--35894468	21	4.4	22	69	18	74	23	1	29	46	1.59
35894430--35894554	66	1.9	66	88	0	187	26	2	27	44	1.67
35895218--35895512	41	7.2	40	82	5	351	23	24	20	31	1.98
35895235--35895540	81	3.8	81	86	1	387	26	24	19	30	1.98
35895213--35895512	164	1.8	163	86	2	440	24	24	20	32	1.98
35895218--35895543	40	8.0	39	80	9	268	25	23	19	31	1.98
35897549--35897770	40	5.6	40	89	1	322	28	25	22	23	1.99
35903929--35903969	21	2.0	21	85	0	55	68	14	4	12	1.36
35906843--35906903	30	2.0	30	87	0	86	29	24	8	37	1.84
35922352--35922468	43	2.7	43	85	3	148	17	19	35	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35928234--35928415	39	4.6	39	88	2	213	25	21	28	24	1.99
35928194--35928417	40	5.7	40	84	6	253	24	22	28	25	2.00
35928194--35928415	79	2.8	80	82	6	263	24	22	27	24	2.00
35928247--35928450	79	2.6	79	82	5	200	25	21	28	25	1.99
35933201--35933267	27	2.5	27	76	7	66	28	8	17	44	1.79
35934759--35934936	27	6.6	27	83	3	196	30	28	14	26	1.95
35934780--35934935	82	1.9	81	86	3	224	30	28	14	26	1.95
35939613--35939647	17	2.0	17	88	5	52	14	25	40	20	1.90
35943533--35943649	59	2.0	59	86	3	164	34	32	16	17	1.92
35944934--35944970	13	2.8	13	83	0	56	37	16	5	40	1.71
35948086--35948137	24	2.2	24	83	13	63	50	25	3	21	1.65
35949198--35949568	126	2.9	125	94	1	634	38	15	17	29	1.90
35949673--35949745	13	6.1	12	70	15	53	65	0	5	28	1.14
35949693--35949744	21	2.5	21	87	3	70	67	0	5	26	1.13
35949667--35949745	33	2.4	33	83	14	92	65	0	5	29	1.13
35949774--35949824	21	2.4	21	83	0	57	54	5	11	27	1.59
35950021--35950051	14	2.2	14	94	0	53	67	0	0	32	0.91
35950023--35950059	19	2.0	18	94	5	65	67	0	0	32	0.91
35950463--35950537	37	2.0	37	94	0	132	17	1	52	29	1.53
35950503--35950566	29	2.2	29	83	5	85	17	1	50	31	1.55
35950812--35951107	85	3.5	85	92	2	479	18	26	25	29	1.98
35951078--35951278	87	2.3	87	88	0	294	23	17	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35951078--35951402	44	7.5	44	70	12	174	23	18	20	37	1.94
35959150--35959190	21	2.0	21	85	0	55	14	24	19	41	1.89
35962691--35963059	126	2.9	125	92	1	621	38	15	17	28	1.91
35963190--35963229	21	1.9	21	89	0	62	67	2	5	25	1.23
35963270--35963311	21	2.0	21	85	0	57	59	9	9	21	1.57
35963497--35963549	14	3.9	14	78	9	56	60	1	0	37	1.08
35963521--35963557	19	2.0	18	94	5	65	67	0	0	32	0.91
35963532--35963663	60	2.2	60	84	9	162	63	5	4	26	1.35
35963947--35963982	18	2.0	18	94	0	63	16	0	58	25	1.38
35963958--35964057	36	3.2	30	75	19	96	17	1	49	33	1.53
35963961--35964034	36	2.0	37	97	2	141	16	0	54	29	1.43
35965112--35965164	23	2.3	23	96	0	97	45	13	7	33	1.71
35967122--35967223	40	2.5	40	81	7	109	34	14	22	28	1.94
35974678--35974811	51	2.6	52	87	6	202	27	27	15	29	1.96
35976018--35976082	22	3.1	20	76	10	67	21	9	24	44	1.81
35976038--35976099	22	3.0	21	72	11	65	22	8	24	45	1.79
35976015--35976099	43	2.0	41	90	4	134	23	8	23	44	1.80
35978458--35978576	41	2.9	40	80	10	102	30	37	16	15	1.90
35987201--35987928	367	2.0	364	84	4	935	25	20	23	30	1.99
35998964--35998997	10	3.5	10	88	4	52	17	8	0	73	1.08
36004313--36004670	179	2.0	180	83	3	454	31	20	8	39	1.83
36005226--36005666	50	8.7	50	80	4	422	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36005226--36005666	101	4.4	100	78	6	367	29	26	18	25	1.98
36005229--36005666	151	2.9	151	90	2	655	29	26	18	25	1.98
36013739--36013812	30	2.5	28	77	16	78	13	18	16	51	1.76
36023229--36023280	27	2.0	26	88	3	77	36	21	25	17	1.94
36029477--36029580	23	4.5	24	82	9	128	22	24	19	34	1.96
36029477--36029580	45	2.3	46	85	5	140	22	24	19	34	1.96
36032506--36032688	40	4.6	39	82	5	181	24	21	27	26	2.00
36032504--36032688	79	2.3	80	81	9	209	24	21	27	27	1.99
36032557--36032721	79	2.1	79	81	8	185	26	20	26	26	1.99
36039949--36040007	29	2.1	28	96	3	109	18	28	28	23	1.98
36040084--36040142	27	2.2	27	81	6	66	40	16	11	30	1.85
36040122--36040199	27	2.9	27	78	3	77	33	20	19	26	1.96
36040138--36040211	27	2.7	27	74	15	71	32	20	18	28	1.96
36040433--36040475	22	2.0	22	90	0	68	9	27	27	34	1.88
36040619--36040672	28	2.0	28	88	3	83	18	24	22	35	1.96
36041299--36041331	7	4.6	7	96	3	57	39	0	15	45	1.46
36049479--36049514	18	2.1	17	89	5	54	83	2	13	0	0.76
36052642--36052703	16	3.4	18	68	14	56	67	1	11	19	1.29
36061278--36061439	42	3.8	42	80	8	168	28	24	16	31	1.96
36067970--36068403	49	9.1	49	91	3	674	32	8	29	28	1.88
36067970--36068403	47	9.1	47	89	4	629	32	8	29	28	1.88
36067970--36068403	96	4.5	96	92	2	676	32	8	29	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36068522--36068600	37	2.1	37	88	0	113	25	18	30	25	1.98
36070466--36070611	43	3.4	43	98	0	274	23	14	35	26	1.93
36070593--36070666	29	2.6	29	86	4	96	25	14	33	25	1.94
36070977--36071092	40	2.9	40	84	0	151	27	22	24	25	2.00
36074878--36075455	47	12.1	49	91	4	914	31	8	29	29	1.88
36074878--36075455	96	6.0	95	94	1	926	31	8	29	29	1.88
36075574--36075652	37	2.1	37	88	0	113	25	18	30	25	1.98
36083217--36083302	43	2.0	42	97	2	163	22	22	13	41	1.88
36084803--36084928	16	6.9	18	72	22	77	65	0	3	31	1.09
36084806--36084927	34	3.5	35	78	7	108	65	0	3	31	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259