genome.fa.s9.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  154  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50516302--50516519	40	5.5	40	86	2	271	25	27	23	23	2.00
50517772--50517810	10	3.9	10	83	9	53	0	17	0	82	0.68
50545927--50545953	11	2.5	11	100	0	54	18	0	0	81	0.69
50549469--50549526	30	1.9	30	89	0	89	41	6	22	29	1.80
50549988--50550301	64	4.8	64	78	8	278	32	14	27	25	1.95
50554233--50554347	42	2.7	41	85	9	151	27	25	15	31	1.96
50554466--50554676	31	6.8	31	92	2	316	26	26	20	27	1.99
50554652--50554780	50	2.5	51	88	5	190	26	22	15	35	1.94
50557611--50557639	14	2.0	15	93	6	51	58	0	0	41	0.98
50558327--50558352	9	2.9	9	100	0	52	42	0	0	57	0.98
50558794--50558823	15	2.0	15	93	0	51	40	0	3	56	1.16
50560990--50561165	46	3.8	46	79	12	216	20	21	29	28	1.98
50560987--50561158	93	1.8	93	96	0	317	20	21	29	27	1.98
50562013--50562920	453	2.0	453	97	0	1708	35	14	19	30	1.91
50562938--50563075	62	2.2	62	82	7	172	25	19	28	26	1.99
50565368--50565522	42	3.7	43	68	14	124	26	18	24	30	1.98
50567698--50567814	40	2.9	40	94	0	198	33	16	29	20	1.94
50567762--50568679	110	8.3	111	95	1	1583	25	19	28	26	1.98
50567762--50568679	222	4.1	221	95	1	1586	25	19	28	26	1.98
50567762--50568679	332	2.8	333	95	0	1633	25	19	28	26	1.98
50569287--50569312	12	2.2	12	100	0	52	38	7	34	19	1.80
50569695--50569895	84	2.4	83	91	4	330	32	19	17	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50571094--50571133	11	3.7	11	90	3	64	35	10	27	27	1.89
50572471--50572712	17	13.6	17	71	24	144	44	11	1	42	1.50
50572497--50572577	23	3.8	23	70	26	79	43	8	2	45	1.48
50572488--50572594	40	2.7	40	98	0	205	44	10	1	42	1.49
50572528--50572655	57	2.2	60	92	5	217	43	11	1	42	1.50
50572462--50572728	101	2.7	101	96	2	488	43	10	1	44	1.49
50572580--50572695	44	2.7	43	90	5	184	43	11	1	43	1.50
50572624--50572745	57	2.1	57	92	0	199	41	10	2	45	1.52
50572717--50572787	13	5.5	13	86	0	106	39	7	2	50	1.44
50572717--50572788	26	2.8	26	100	0	144	40	6	2	50	1.44
50572934--50573083	73	2.1	73	98	0	291	50	1	7	41	1.39
50573120--50573567	26	18.1	25	86	9	609	46	19	0	33	1.50
50573120--50573604	171	2.9	170	93	4	822	46	19	0	33	1.51
50573559--50573612	9	5.7	10	79	20	55	42	20	0	37	1.52
50579076--50579133	21	2.8	21	78	0	62	34	18	43	3	1.68
50579458--50579662	42	4.9	42	90	0	277	26	20	20	32	1.97
50581608--50581650	17	2.4	19	88	7	63	32	0	0	67	0.91
50581606--50581664	29	2.0	29	83	6	75	37	0	0	62	0.95
50593055--50593092	19	2.0	20	85	15	53	39	23	0	36	1.55
50593320--50593488	46	3.7	45	80	12	191	30	28	19	21	1.98
50593321--50593489	93	1.8	93	92	0	284	30	28	19	21	1.98
50593910--50593969	30	2.0	30	90	0	93	30	25	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50616674--50616711	19	2.0	20	85	15	53	39	23	0	36	1.55
50616938--50617106	46	3.7	45	80	12	191	30	28	19	21	1.98
50616939--50617107	93	1.8	93	92	0	284	30	28	19	21	1.98
50617529--50617588	30	2.0	30	90	0	93	30	25	8	36	1.85
50624259--50624296	19	2.0	20	85	15	53	39	23	0	36	1.55
50624525--50624695	93	1.8	93	89	2	272	29	28	19	22	1.98
50624520--50624690	46	3.7	47	78	10	181	30	27	19	22	1.98
50625115--50625174	30	2.0	30	90	0	93	30	25	8	36	1.85
50627283--50627373	44	2.1	44	91	0	146	46	10	9	32	1.72
50632578--50633124	292	1.9	292	89	0	862	31	17	22	28	1.97
50636065--50636118	20	2.8	20	85	2	65	25	20	25	27	1.99
50636904--50636972	34	2.0	34	91	0	111	37	30	5	26	1.80
50637203--50637245	20	2.3	18	81	18	52	34	16	2	46	1.60
50638681--50638803	23	5.3	23	78	9	108	36	17	21	23	1.95
50638681--50638803	45	2.7	46	77	8	117	36	17	21	23	1.95
50640330--50640435	43	2.5	43	80	7	110	29	16	22	31	1.96
50643167--50643198	8	4.0	8	95	0	55	37	21	0	40	1.54
50652793--50653146	187	1.9	183	82	5	435	40	0	33	25	1.59
50654545--50654583	20	2.0	20	100	0	78	61	12	10	15	1.56
50655770--50655804	16	2.2	16	94	0	61	51	28	8	11	1.67
50656853--50656915	3	21.3	3	79	12	60	33	4	0	61	1.17
50656945--50656987	17	2.4	18	81	14	54	27	9	0	62	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50681066--50681227	24	6.8	24	67	6	96	27	14	27	31	1.95
50686320--50686538	108	2.0	108	98	0	420	29	15	20	34	1.93
50693166--50693194	13	2.1	14	93	6	51	55	10	0	34	1.34
50698254--50698366	46	2.4	47	88	2	174	40	2	13	43	1.58
50698274--50698346	18	4.0	18	75	19	62	43	0	12	43	1.42
50699438--50699485	25	1.9	25	82	0	60	47	4	12	35	1.60
50702995--50703019	5	5.0	5	100	0	50	20	0	0	80	0.72
50703392--50703471	38	2.0	40	90	4	128	45	23	2	28	1.66
50703626--50703692	21	3.2	21	73	0	62	22	0	25	52	1.47
50703995--50704327	41	8.2	41	82	1	355	24	15	24	35	1.94
50707435--50707849	47	8.8	47	93	1	695	33	8	28	29	1.87
50707968--50708046	37	2.1	37	88	0	113	25	17	31	25	1.97
50710949--50711044	28	3.5	28	81	9	90	19	23	20	35	1.96
50710945--50711053	27	4.0	26	80	12	112	18	22	21	38	1.93
50710945--50711053	55	2.0	54	82	5	130	18	22	21	38	1.93
50718518--50719257	47	15.7	47	91	4	1158	32	8	28	29	1.87
50718518--50719257	241	3.2	238	90	6	1204	32	8	28	29	1.87
50718973--50719094	37	3.0	37	77	21	145	32	9	27	30	1.89
50719376--50719454	37	2.1	37	90	0	122	24	18	31	25	1.98
50721630--50721775	25	6.0	24	90	5	197	29	22	19	28	1.98
50721824--50721870	20	2.3	20	96	0	85	34	21	10	34	1.88
50741806--50742022	40	5.5	40	86	3	271	23	23	28	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50751977--50752028	24	2.2	23	83	10	61	32	7	3	55	1.46
50753892--50753948	26	2.2	26	81	9	62	26	17	19	36	1.94
50767508--50767549	22	1.9	22	85	9	59	23	21	21	33	1.97
50770637--50770773	28	4.9	28	77	6	80	29	16	27	26	1.96
50774091--50774204	57	2.0	57	85	0	156	29	15	28	26	1.96
50788734--50788812	37	2.1	37	86	4	106	25	29	18	26	1.98
50788931--50789374	47	9.4	47	94	1	735	29	29	8	32	1.87
50788931--50789374	190	2.4	190	93	1	752	29	29	8	32	1.87
50793121--50793271	27	5.6	27	85	3	160	27	15	28	28	1.96
50793120--50793271	55	2.8	54	83	4	171	27	15	28	28	1.96
50793121--50793271	82	1.8	82	81	2	187	27	15	28	28	1.96
50793176--50793282	27	3.9	27	85	1	70	26	14	28	30	1.95
50796234--50796363	40	3.2	40	92	0	206	26	27	22	23	2.00
50796669--50796747	29	2.7	29	86	5	106	27	32	15	24	1.95
50796729--50796831	43	2.4	43	95	0	188	27	34	14	23	1.94
50798696--50798774	37	2.1	37	88	4	115	25	30	18	25	1.98
50798893--50799416	47	11.1	47	94	0	868	29	29	8	33	1.87
50798893--50799416	237	2.2	235	93	0	886	29	29	8	33	1.87
50808351--50808460	6	17.8	6	72	19	84	48	14	20	17	1.81
50808362--50808432	19	3.8	19	78	10	83	47	15	21	15	1.82
50808346--50808460	31	3.7	31	71	18	112	47	14	19	18	1.82
50808353--50808451	37	2.6	37	80	10	112	47	15	20	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50808400--50808460	25	2.4	25	88	0	95	45	13	21	19	1.84
50808835--50809082	27	9.2	27	81	7	263	25	17	20	36	1.94
50808834--50809082	54	4.6	55	83	5	294	25	17	20	36	1.94
50808808--50809082	134	2.1	134	84	4	358	25	18	20	36	1.95
50809088--50809502	27	15.4	27	78	5	293	37	9	20	32	1.85
50809088--50809502	54	7.7	54	77	5	329	37	9	20	32	1.85
50809201--50809273	28	2.7	27	91	2	110	30	8	19	42	1.80
50809264--50809488	107	2.1	108	87	1	326	38	8	20	32	1.83
50809523--50809647	27	4.7	27	77	11	107	32	9	20	37	1.85
50809481--50809654	53	3.3	54	79	4	192	32	9	20	37	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259