genome.fa.s9.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  129  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41755506--41755763	46	5.5	46	78	10	199	28	18	29	23	1.98
41761831--41762504	47	14.2	47	90	3	1046	31	8	30	29	1.86
41761831--41762504	96	7.1	94	91	3	1055	31	8	30	29	1.86
41762213--41762286	22	3.3	22	65	10	60	29	9	31	29	1.89
41762623--41762701	37	2.1	37	88	0	113	24	20	31	24	1.98
41765922--41765953	15	2.1	15	100	0	64	31	21	6	40	1.78
41806209--41806256	17	2.8	17	75	12	53	41	14	0	43	1.45
41806712--41806775	32	2.0	32	96	0	119	40	17	17	25	1.90
41809353--41809563	40	5.3	41	85	5	283	24	20	28	26	1.99
41809353--41809543	79	2.4	80	92	0	330	24	20	28	26	1.99
41817410--41817601	40	4.8	41	83	5	259	23	20	28	26	1.99
41817410--41817601	79	2.4	80	92	0	332	23	20	28	26	1.99
41825813--41825947	40	3.4	40	87	2	191	24	22	28	25	1.99
41832873--41833050	27	6.6	27	83	3	196	26	14	28	30	1.95
41832874--41833029	82	1.9	81	88	3	233	26	15	28	29	1.96
41837176--41837229	25	2.2	25	89	0	81	22	27	29	20	1.98
41855426--41855649	40	5.6	40	84	5	290	24	23	26	25	2.00
41855430--41855649	83	2.7	80	86	5	284	24	23	26	25	2.00
41858114--41858138	8	3.1	8	100	0	50	0	12	0	88	0.53
41870394--41870444	25	2.0	25	100	0	102	27	15	15	41	1.88
41871435--41871575	57	2.4	56	77	8	140	27	23	19	29	1.98
41874082--41874106	9	2.8	9	100	0	50	68	0	24	8	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41874467--41874508	21	2.0	21	85	0	57	59	11	14	14	1.61
41874861--41874917	18	3.4	18	65	30	54	17	22	40	19	1.91
41874860--41874935	31	2.5	31	95	0	134	19	21	38	21	1.94
41875283--41875327	23	1.9	24	86	4	65	22	4	48	24	1.68
41875401--41875468	34	2.0	34	85	5	93	27	22	27	22	1.99
41894661--41894715	17	3.1	17	84	5	65	45	14	3	36	1.63
41902207--41902384	61	3.0	60	72	16	161	43	1	3	51	1.28
41902299--41902357	26	2.3	25	85	8	82	40	0	1	57	1.09
41902312--41902367	15	4.0	15	73	17	57	44	0	0	55	0.99
41902338--41902406	22	3.3	22	69	22	67	43	2	0	53	1.15
41902284--41902424	17	8.6	17	67	22	61	45	1	0	52	1.14
41902652--41902719	16	4.2	16	92	0	118	35	36	0	27	1.58
41905074--41905142	36	1.9	35	91	2	111	27	8	15	47	1.75
41909997--41910116	63	1.9	63	94	0	213	45	19	16	19	1.86
41911493--41911542	25	2.0	25	100	0	100	16	28	12	44	1.83
41916280--41916335	28	2.0	29	85	3	78	55	1	0	42	1.10
41916855--41916911	24	2.4	25	79	8	73	63	1	7	28	1.30
41916956--41917020	32	2.0	32	100	0	130	49	9	6	35	1.60
41920326--41920378	22	2.4	22	74	0	61	16	18	22	41	1.90
41920411--41920454	22	2.0	22	82	8	54	18	18	29	34	1.94
41920358--41920487	38	3.4	38	85	0	179	20	17	26	35	1.95
41921720--41921886	43	3.9	43	75	10	130	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41921777--41921883	42	2.5	43	79	11	121	28	21	23	26	1.99
41922132--41922198	32	2.1	32	97	0	125	22	8	23	44	1.81
41924103--41924141	12	3.2	12	81	0	51	30	33	20	15	1.94
41929954--41929983	16	1.9	16	93	6	53	30	0	20	50	1.49
41934843--41934885	22	2.0	22	86	4	61	32	0	2	65	1.06
41938544--41938581	18	2.2	17	86	9	51	63	26	2	7	1.35
41944492--41944553	25	2.5	25	81	5	72	22	24	17	35	1.95
41953315--41953384	28	2.5	28	85	0	104	51	17	4	27	1.63
41962822--41963046	79	2.8	80	82	9	253	25	22	27	24	2.00
41962822--41963046	40	5.7	40	86	5	262	25	22	27	24	2.00
41962822--41963046	119	1.9	120	82	6	287	25	22	27	24	2.00
41962875--41963081	79	2.6	79	83	6	206	27	21	26	24	1.99
41969911--41970135	79	2.8	79	82	9	260	25	21	27	25	2.00
41969911--41970135	40	5.7	40	85	5	253	25	21	27	25	2.00
41969911--41970135	119	1.9	120	81	6	278	25	21	27	25	2.00
41969964--41970168	79	2.6	79	81	6	193	27	20	26	24	1.99
41975478--41975761	48	5.9	48	74	5	200	26	23	19	29	1.98
41975508--41975761	96	2.6	96	83	3	298	26	24	19	29	1.98
41976903--41977000	40	2.4	42	83	11	114	25	17	28	28	1.97
41978854--41978892	13	2.8	14	84	7	53	51	0	0	48	1.00
41982859--41982929	28	2.5	28	88	0	106	50	15	8	25	1.72
41990268--41990366	38	2.6	38	81	12	114	40	5	8	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41996754--41996814	32	1.9	32	100	0	122	42	8	0	49	1.32
41998382--41998434	20	2.7	20	79	2	63	26	3	3	66	1.26
42010331--42010387	13	4.6	13	82	12	75	40	0	14	45	1.44
42010324--42010373	23	2.2	23	92	3	84	40	0	12	48	1.40
42017676--42017711	18	1.9	19	88	5	56	52	2	8	36	1.46
42022950--42023045	28	3.6	28	77	11	110	37	14	21	26	1.92
42023072--42023220	51	2.9	51	91	2	237	31	14	25	28	1.94
42024166--42024218	25	2.1	25	100	0	106	35	24	3	35	1.74
42028702--42028932	40	5.8	40	90	2	331	24	23	28	23	2.00
42036759--42036949	40	4.8	40	89	3	262	23	23	28	24	2.00
42039267--42039781	48	10.7	47	79	4	426	24	28	19	27	1.98
42039267--42039790	144	3.6	144	86	2	681	24	28	19	27	1.98
42039267--42039791	96	5.4	96	79	4	538	24	28	19	27	1.98
42042920--42043008	28	3.3	27	84	9	112	33	14	25	25	1.94
42043034--42043202	51	3.3	51	90	0	284	33	13	23	30	1.92
42043034--42043231	51	3.9	51	86	4	274	33	14	23	29	1.94
42043034--42043226	102	1.9	102	90	4	309	33	13	23	29	1.93
42045700--42045858	42	3.6	43	76	13	153	33	24	16	25	1.95
42047797--42047830	17	2.0	17	100	0	68	23	23	35	17	1.95
42050866--42050918	18	2.9	18	72	10	54	24	24	0	50	1.49
42058462--42058576	29	4.1	27	76	9	95	27	27	14	29	1.95
42069244--42069424	80	2.3	79	91	1	292	22	23	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42069244--42069424	40	4.6	40	86	5	244	22	23	28	25	1.99
42072738--42072818	33	2.5	32	78	11	87	46	9	4	38	1.59
42072799--42072839	18	2.3	18	91	0	64	53	7	0	39	1.29
42072995--42073094	29	3.2	30	77	8	103	46	15	5	34	1.67
42076506--42076690	79	2.3	81	81	7	209	25	22	25	25	2.00
42076506--42076697	40	4.8	40	83	6	185	26	22	26	25	2.00
42076562--42076713	79	1.9	79	81	7	184	28	20	25	26	1.99
42102528--42102575	22	2.2	22	92	0	78	54	14	6	25	1.63
42104819--42104854	17	2.1	17	100	0	72	27	16	19	36	1.93
42111215--42111247	3	11.3	3	93	6	59	69	0	0	30	0.88
42112879--42112966	45	2.0	45	93	0	149	22	10	26	40	1.86
42114872--42114945	35	2.1	34	87	7	105	25	27	21	25	2.00
42114928--42115073	76	1.9	76	84	5	197	27	22	20	29	1.99
42132635--42132696	29	2.1	29	87	0	88	16	22	38	22	1.92
42136178--42136666	47	10.3	47	90	1	753	31	8	30	29	1.88
42136178--42136666	143	3.4	141	89	1	753	31	8	30	29	1.88
42136178--42136655	190	2.5	190	97	0	902	31	9	30	29	1.88
42138887--42139155	40	6.8	40	88	2	380	24	22	27	24	2.00
42142997--42143497	47	10.4	49	91	3	765	32	8	29	29	1.87
42142997--42143497	96	5.2	96	91	3	821	32	8	29	29	1.87
42145723--42145990	40	6.7	40	88	2	378	24	22	27	24	2.00
42149838--42150279	96	4.6	96	91	3	698	32	8	30	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42149838--42150279	47	9.2	47	92	2	695	32	8	30	29	1.87
42152890--42152930	21	1.9	22	95	5	75	31	21	14	31	1.94
42153504--42153549	22	2.1	22	100	0	92	34	13	23	28	1.92
42157200--42157294	25	3.8	25	81	5	102	36	17	23	22	1.95
42157186--42157283	50	1.9	51	81	2	117	31	18	24	25	1.97
42157280--42157334	24	2.3	25	71	9	60	43	20	16	20	1.88
42157419--42157468	26	1.9	26	84	8	66	42	18	20	20	1.90
42157913--42157954	21	2.0	21	90	0	66	40	16	0	42	1.48
42157913--42157951	5	7.6	5	82	5	51	41	17	0	41	1.50
42160480--42160508	14	2.1	14	100	0	58	44	0	6	48	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259